Wall clock time and date at job start Thu Apr 9 2020 14:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08999 * 109.75653 * 2 1 4 4 C 1.53423 * 109.61673 * 239.55391 * 2 1 3 5 5 O 1.43135 * 107.90180 * 177.02876 * 4 2 1 6 6 C 1.36146 * 116.68017 * 45.33500 * 5 4 2 7 7 C 1.38777 * 118.74267 * 165.34131 * 6 5 4 8 8 C 1.38176 * 120.20129 * 179.54871 * 7 6 5 9 9 C 1.38256 * 120.03369 * 359.97438 * 8 7 6 10 10 C 1.38068 * 120.11214 * 0.08018 * 9 8 7 11 11 C 1.38966 * 121.37966 * 344.98931 * 6 5 4 12 12 N 1.39858 * 121.86395 * 0.58222 * 11 6 5 13 13 C 1.46893 * 110.99907 * 104.70059 * 12 11 6 14 14 C 1.53000 * 109.47777 * 76.68384 * 13 12 11 15 15 H 1.09009 * 109.46671 * 43.37993 * 14 13 12 16 16 O 1.42893 * 109.47003 * 283.38244 * 14 13 12 17 17 C 1.50695 * 109.47294 * 163.37965 * 14 13 12 18 18 H 1.07998 * 120.00269 * 359.97438 * 17 14 13 19 19 C 1.37882 * 120.00001 * 180.02562 * 17 14 13 20 20 N 1.31517 * 119.99821 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 120.00031 * 180.02562 * 19 17 14 22 22 H 1.48504 * 109.47172 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47389 * 119.99861 * 21 19 17 24 24 H 1.48504 * 109.46971 * 239.99611 * 21 19 17 25 25 H 1.08994 * 109.47077 * 290.44147 * 1 2 3 26 26 H 1.08995 * 109.46785 * 50.44432 * 1 2 3 27 27 H 1.09002 * 109.46707 * 170.43892 * 1 2 3 28 28 H 1.08995 * 109.77272 * 57.42306 * 4 2 1 29 29 H 1.08997 * 109.81144 * 296.65460 * 4 2 1 30 30 H 1.07998 * 119.90123 * 359.53830 * 7 6 5 31 31 H 1.08008 * 119.98379 * 180.02562 * 8 7 6 32 32 H 1.07998 * 119.94650 * 180.10345 * 9 8 7 33 33 H 1.07998 * 119.87829 * 180.02562 * 10 9 8 34 34 H 1.09000 * 109.47336 * 316.68352 * 13 12 11 35 35 H 1.09001 * 109.46889 * 196.68773 * 13 12 11 36 36 H 0.96695 * 114.00751 * 299.99314 * 16 14 13 37 37 H 0.97001 * 119.99812 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8985 1.0258 0.0000 4 6 2.0452 -0.7323 -1.2459 5 8 3.4742 -0.6501 -1.2453 6 6 4.1008 -0.9074 -0.0643 7 6 5.4681 -1.1443 -0.0721 8 6 6.1362 -1.3994 1.1102 9 6 5.4430 -1.4188 2.3064 10 6 4.0824 -1.1851 2.3223 11 6 3.4013 -0.9289 1.1363 12 7 2.0227 -0.7005 1.1918 13 6 1.2894 -1.9551 1.4058 14 6 1.4086 -2.3718 2.8732 15 1 1.2693 -1.4989 3.5111 16 8 2.7030 -2.9304 3.1060 17 6 0.3533 -3.3996 3.1909 18 1 -0.3339 -3.7231 2.4231 19 6 0.2646 -3.9264 4.4620 20 7 1.1012 -3.5322 5.3970 21 14 -1.0430 -5.2010 4.8556 22 1 -1.8517 -5.4723 3.6400 23 1 -0.3907 -6.4563 5.3070 24 1 -1.9266 -4.6872 5.9329 25 1 -0.3633 0.3589 0.9629 26 1 -0.3633 0.6544 -0.7923 27 1 -0.3633 -1.0134 -0.1707 28 1 1.6488 -0.2571 -2.1431 29 1 1.7359 -1.7770 -1.2146 30 1 6.0118 -1.1295 -1.0052 31 1 7.2005 -1.5830 1.1001 32 1 5.9668 -1.6166 3.2298 33 1 3.5448 -1.2006 3.2588 34 1 1.7106 -2.7350 0.7714 35 1 0.2390 -1.8096 1.1536 36 1 2.8961 -3.7123 2.5710 37 1 1.0390 -3.9030 6.2912 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930007708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:48:13 Heat of formation + Delta-G solvation = -40.418661 kcal Electronic energy + Delta-G solvation = -20831.318990 eV Core-core repulsion = 17767.485582 eV Total energy + Delta-G solvation = -3063.833407 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.87098 -37.15674 -37.01386 -35.02837 -32.21795 -31.71085 -30.00693 -29.13981 -27.29757 -26.22748 -24.59390 -22.42632 -21.73518 -21.25878 -18.98936 -17.72512 -16.98804 -16.54714 -16.04761 -14.91717 -14.74695 -14.59453 -14.47095 -14.35317 -13.72615 -13.45192 -13.16281 -12.94189 -12.56525 -12.20239 -12.12576 -11.91268 -11.35201 -11.18714 -11.05141 -10.98131 -10.94933 -10.60492 -10.51935 -10.23120 -10.02238 -9.20233 -8.88287 -8.61029 -8.04495 -7.72818 -7.38067 -6.05337 -4.22994 1.82993 1.98758 3.23524 3.32277 3.34523 3.55198 4.05423 4.32608 4.38511 4.71314 5.08113 5.10322 5.22285 5.25333 5.42771 5.49966 5.56537 5.67531 5.81576 5.85368 5.92816 6.03736 6.17365 6.21618 6.23042 6.37568 6.48797 6.72062 6.79593 6.89173 7.06008 7.29185 7.38765 7.53706 7.71294 7.84078 8.01716 8.14023 8.78747 9.31039 9.52973 10.98659 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.022315 B = 0.007098 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.457464 B = 3943.661974 C = 4861.417887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 H 0.091 0.909 4 C 0.027 3.973 5 O -0.318 6.318 6 C 0.077 3.923 7 C -0.156 4.156 8 C -0.104 4.104 9 C -0.153 4.153 10 C -0.024 4.024 11 C 0.027 3.973 12 N -0.481 5.481 13 C 0.023 3.977 14 C 0.234 3.766 15 H 0.067 0.933 16 O -0.553 6.553 17 C -0.572 4.572 18 H 0.054 0.946 19 C 0.081 3.919 20 N -0.856 5.856 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.156 0.844 34 H 0.027 0.973 35 H 0.086 0.914 36 H 0.340 0.660 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 5.359 -10.257 12.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 H 0.109 0.891 4 C -0.050 4.050 5 O -0.232 6.232 6 C 0.030 3.970 7 C -0.176 4.176 8 C -0.123 4.123 9 C -0.172 4.172 10 C -0.044 4.044 11 C -0.070 4.070 12 N -0.198 5.198 13 C -0.102 4.102 14 C 0.176 3.824 15 H 0.085 0.915 16 O -0.356 6.356 17 C -0.610 4.610 18 H 0.072 0.928 19 C -0.125 4.125 20 N -0.491 5.491 21 Si 0.716 3.284 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.173 0.827 34 H 0.045 0.955 35 H 0.104 0.896 36 H 0.184 0.816 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.657 6.202 -9.417 11.854 hybrid contribution -0.920 -1.754 -0.746 2.117 sum 2.737 4.448 -10.164 11.427 Atomic orbital electron populations 1.21897 0.92953 1.02409 1.03195 1.22451 0.96911 0.98807 0.88339 0.89065 1.23578 0.79558 1.01257 1.00636 1.86211 1.20473 1.86010 1.30534 1.19054 0.92820 1.00937 0.84215 1.20193 0.91428 1.07178 0.98770 1.20811 0.99167 1.00240 0.92051 1.20943 0.94445 1.04131 0.97665 1.21374 0.92825 0.91898 0.98271 1.18788 0.89762 1.06087 0.92327 1.59437 1.01195 1.24036 1.35176 1.23456 0.97635 0.86695 1.02423 1.19376 0.81819 0.94041 0.87132 0.91532 1.86633 1.35693 1.45114 1.68173 1.21618 1.17320 1.25715 0.96379 0.92775 1.24998 0.95174 0.96136 0.96208 1.70072 1.35045 1.41520 1.02503 0.86632 0.81831 0.81577 0.78409 1.19811 1.20910 1.20865 0.90522 0.92010 0.91705 0.87754 0.91889 0.86365 0.86391 0.86248 0.82711 0.95491 0.89610 0.81567 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.18 37.16 0.30 -1.59 16 2 C 0.04 0.66 3.05 -67.57 -0.21 0.45 16 3 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 4 C 0.03 0.39 6.35 37.38 0.24 0.62 16 5 O -0.32 -5.37 10.40 -20.20 -0.21 -5.58 16 6 C 0.08 1.37 6.47 -39.11 -0.25 1.12 16 7 C -0.16 -2.52 9.94 -39.40 -0.39 -2.91 16 8 C -0.10 -1.57 10.04 -39.60 -0.40 -1.97 16 9 C -0.15 -2.57 10.03 -39.64 -0.40 -2.96 16 10 C -0.02 -0.47 7.03 -39.31 -0.28 -0.75 16 11 C 0.03 0.51 4.96 -83.59 -0.41 0.09 16 12 N -0.48 -8.92 4.48 -163.28 -0.73 -9.65 16 13 C 0.02 0.45 3.91 -3.83 -0.01 0.44 16 14 C 0.23 5.63 2.30 -27.89 -0.06 5.56 16 15 H 0.07 1.80 8.11 -51.92 -0.42 1.38 16 16 O -0.55 -13.20 8.19 -35.23 -0.29 -13.48 16 17 C -0.57 -15.07 8.69 -34.44 -0.30 -15.37 16 18 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 19 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 20 N -0.86 -24.43 12.84 55.43 0.71 -23.72 16 21 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.85 6.47 -51.93 -0.34 0.51 16 28 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.94 7.22 -51.93 -0.37 0.56 16 30 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.16 3.40 5.80 -52.49 -0.30 3.10 16 34 H 0.03 0.55 7.43 -51.93 -0.39 0.16 16 35 H 0.09 1.64 5.01 -51.93 -0.26 1.38 16 36 H 0.34 7.69 9.01 45.56 0.41 8.10 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 294.94 15.07 4.44 4.44 Total: -1.00 -29.07 294.94 -7.54 -36.61 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.17 Total: 10.87 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -2.27 Total: -15.16 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: -0.02 Total: -33.37 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.50 Total: -19.06 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.07 -7.54 -36.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930007708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.813 kcal (2) G-P(sol) polarization free energy of solvation -29.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds