Wall clock time and date at job start Thu Apr 9 2020 14:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47035 * 2 1 4 4 C 1.35949 * 116.99986 * 179.97438 * 3 2 1 5 5 C 1.38564 * 120.08377 * 0.27975 * 4 3 2 6 6 C 1.38245 * 120.01000 * 180.26607 * 5 4 3 7 7 C 1.50703 * 119.90515 * 179.72808 * 6 5 4 8 8 C 1.53009 * 109.46651 * 269.72749 * 7 6 5 9 9 H 1.08996 * 109.47034 * 304.99909 * 8 7 6 10 10 C 1.52998 * 109.46699 * 185.00381 * 8 7 6 11 11 N 1.46892 * 109.47452 * 65.00281 * 8 7 6 12 12 C 1.38320 * 120.18407 * 359.45268 * 6 5 4 13 13 C 1.38155 * 120.16795 * 0.27182 * 12 6 5 14 14 C 1.38751 * 119.98903 * 0.02562 * 13 12 6 15 15 O 1.35808 * 120.09435 * 180.02562 * 14 13 12 16 16 C 1.34808 * 116.99498 * 354.40126 * 15 14 13 17 17 H 1.07997 * 120.00657 * 5.06099 * 16 15 14 18 18 C 1.38646 * 119.99711 * 185.06413 * 16 15 14 19 19 N 1.31574 * 119.99912 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00025 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47196 * 89.99726 * 20 18 16 22 22 H 1.48492 * 109.47104 * 209.99988 * 20 18 16 23 23 H 1.48494 * 109.47252 * 330.00229 * 20 18 16 24 24 H 1.08997 * 109.47458 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47326 * 300.00265 * 1 2 3 26 26 H 1.09005 * 109.47257 * 59.99824 * 1 2 3 27 27 H 1.09000 * 109.46824 * 240.00297 * 2 1 3 28 28 H 1.08996 * 109.47400 * 120.00128 * 2 1 3 29 29 H 1.08002 * 119.99857 * 0.02562 * 5 4 3 30 30 H 1.08998 * 109.47126 * 149.72912 * 7 6 5 31 31 H 1.08997 * 109.47378 * 29.72141 * 7 6 5 32 32 H 1.09006 * 109.47445 * 299.99837 * 10 8 7 33 33 H 1.08997 * 109.47303 * 180.02562 * 10 8 7 34 34 H 1.08995 * 109.47556 * 59.99761 * 10 8 7 35 35 H 1.00902 * 111.00397 * 296.04896 * 11 8 7 36 36 H 1.00908 * 110.99911 * 59.99418 * 11 8 7 37 37 H 1.07995 * 119.91393 * 180.29325 * 12 6 5 38 38 H 1.08006 * 120.00635 * 180.02562 * 13 12 6 39 39 H 0.96997 * 119.99813 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3541 1.5255 0.0005 5 6 4.1998 0.4278 -0.0048 6 6 5.5700 0.6107 0.0013 7 6 6.4876 -0.5848 0.0017 8 6 6.7976 -0.9892 1.4445 9 1 7.2006 -0.1318 1.9835 10 6 7.8258 -2.1221 1.4467 11 7 5.5652 -1.4451 2.1009 12 6 6.1012 1.8879 0.0014 13 6 5.2650 2.9876 0.0009 14 6 3.8886 2.8122 0.0010 15 8 3.0646 3.8918 0.0001 16 6 3.6436 5.1036 0.1163 17 1 4.7201 5.1895 0.1224 18 6 2.8569 6.2398 0.2281 19 7 1.5454 6.1353 0.2202 20 14 3.6591 7.9190 0.3898 21 1 3.8693 8.4994 -0.9609 22 1 2.7779 8.8143 1.1817 23 1 4.9679 7.7782 1.0771 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.7884 -0.5708 -0.0098 30 1 7.4150 -0.3312 -0.5118 31 1 6.0030 -1.4149 -0.5121 32 1 7.4229 -2.9796 0.9076 33 1 8.0464 -2.4106 2.4744 34 1 8.7404 -1.7839 0.9597 35 1 4.8934 -0.6954 2.1696 36 1 5.1718 -2.2399 1.6194 37 1 7.1723 2.0257 0.0014 38 1 5.6825 3.9837 0.0005 39 1 0.9950 6.9302 0.2988 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037726161.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:27 Heat of formation + Delta-G solvation = -55.287202 kcal Electronic energy + Delta-G solvation = -20206.922114 eV Core-core repulsion = 17115.132480 eV Total energy + Delta-G solvation = -3091.789634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.75354 -37.63438 -37.41805 -35.25518 -32.32398 -31.44539 -30.09288 -29.38852 -28.63712 -26.16401 -24.81293 -23.37690 -21.43475 -20.99371 -20.20048 -17.99200 -17.55293 -16.32525 -15.98958 -15.60195 -15.07956 -14.60238 -14.53433 -13.98600 -13.88506 -13.67420 -13.42694 -13.16664 -12.60514 -12.34919 -12.31677 -12.15440 -11.93396 -11.72067 -11.49074 -11.26446 -11.15621 -10.94493 -10.84059 -10.73004 -10.49332 -10.25340 -10.16542 -9.43135 -8.83235 -8.59115 -7.91629 -6.90873 -6.41960 -3.98497 2.08881 2.24652 3.13634 3.14715 3.19600 3.85840 3.97248 4.42492 4.70769 4.97079 5.06379 5.13146 5.19329 5.22256 5.31301 5.39789 5.48869 5.52368 5.58628 5.73357 5.77452 5.83989 5.86617 5.96777 6.06735 6.14466 6.17556 6.26075 6.31916 6.43715 6.61466 6.91306 7.08353 7.24333 7.27893 7.35164 7.56681 7.61117 7.97755 8.17884 9.02202 9.73335 10.75330 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.017516 B = 0.005712 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.114833 B = 4900.764113 C = 6230.425612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.300 6.300 4 C 0.063 3.937 5 C -0.168 4.168 6 C -0.151 4.151 7 C -0.096 4.096 8 C 0.090 3.910 9 H 0.079 0.921 10 C -0.143 4.143 11 N -0.844 5.844 12 C -0.095 4.095 13 C -0.209 4.209 14 C 0.131 3.869 15 O -0.164 6.164 16 C -0.392 4.392 17 H 0.091 0.909 18 C 0.040 3.960 19 N -0.857 5.857 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.347 0.653 36 H 0.331 0.669 37 H 0.108 0.892 38 H 0.133 0.867 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.015 -12.765 0.054 14.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.215 6.215 4 C 0.018 3.982 5 C -0.187 4.187 6 C -0.152 4.152 7 C -0.136 4.136 8 C -0.022 4.022 9 H 0.098 0.902 10 C -0.201 4.201 11 N -0.373 5.373 12 C -0.114 4.114 13 C -0.229 4.229 14 C 0.077 3.923 15 O -0.067 6.067 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.491 5.491 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.192 1.192 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.131 0.869 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.161 0.839 36 H 0.143 0.857 37 H 0.126 0.874 38 H 0.151 0.849 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.861 -12.565 0.702 13.882 hybrid contribution 0.067 0.898 -0.937 1.299 sum 5.928 -11.667 -0.235 13.089 Atomic orbital electron populations 1.21731 0.93400 1.01840 1.03765 1.22584 0.95550 0.83571 1.00136 1.86246 1.18851 1.26860 1.89500 1.18156 0.82311 0.91515 1.06198 1.20523 0.93257 0.96090 1.08812 1.19008 0.92631 0.94027 1.09571 1.21190 0.98653 0.95808 0.97906 1.21455 0.91137 0.97302 0.92334 0.90240 1.21810 0.98255 0.98081 1.01953 1.59035 1.08968 1.12094 1.57235 1.20517 0.98315 0.91592 1.00945 1.20921 0.91905 0.99616 1.10450 1.18680 0.89592 0.86594 0.97396 1.84071 1.32440 1.11998 1.78192 1.21346 0.92685 0.80684 1.52074 0.89131 1.25291 0.95405 0.99224 0.96592 1.70072 1.03518 1.30139 1.45373 0.85723 0.78790 0.80330 0.78649 1.19898 1.20241 1.19183 0.91159 0.91506 0.91590 0.93149 0.93028 0.86864 0.91501 0.92300 0.93121 0.92183 0.92468 0.83851 0.85708 0.87438 0.84924 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 37.16 0.38 -1.63 16 2 C 0.06 0.89 5.46 37.16 0.20 1.09 16 3 O -0.30 -6.54 9.92 -34.01 -0.34 -6.88 16 4 C 0.06 1.39 6.70 -39.05 -0.26 1.12 16 5 C -0.17 -2.95 7.39 -39.46 -0.29 -3.24 16 6 C -0.15 -2.51 4.72 -104.59 -0.49 -3.00 16 7 C -0.10 -1.24 4.99 -27.88 -0.14 -1.38 16 8 C 0.09 1.08 3.40 -67.71 -0.23 0.85 16 9 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 10 C -0.14 -1.43 9.49 37.16 0.35 -1.07 16 11 N -0.84 -10.45 9.12 -4.67 -0.04 -10.49 16 12 C -0.10 -1.73 9.69 -39.58 -0.38 -2.11 16 13 C -0.21 -4.55 9.16 -39.42 -0.36 -4.91 16 14 C 0.13 3.26 6.66 -38.98 -0.26 3.00 16 15 O -0.16 -4.80 9.54 -14.50 -0.14 -4.94 16 16 C -0.39 -11.08 9.49 30.88 0.29 -10.79 16 17 H 0.09 2.35 5.21 -52.49 -0.27 2.08 16 18 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 19 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 20 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.71 7.65 -51.93 -0.40 0.31 16 28 H 0.05 0.71 7.67 -51.93 -0.40 0.31 16 29 H 0.11 1.68 6.30 -52.49 -0.33 1.35 16 30 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 31 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.35 4.82 7.33 -39.29 -0.29 4.53 16 36 H 0.33 3.56 9.00 -39.29 -0.35 3.21 16 37 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.13 2.87 5.64 -52.48 -0.30 2.57 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 324.39 15.07 4.89 4.89 Total: -1.00 -31.41 324.39 -6.88 -38.29 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.69 Total: 9.31 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -1.29 Total: -21.05 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.72 Total: -35.23 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.48 Total: -11.82 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.41 -6.88 -38.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037726161.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.001 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds