Wall clock time and date at job start Thu Apr 9 2020 14:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35681 * 117.00313 * 2 1 4 4 N 1.32542 * 120.06571 * 0.27067 * 3 2 1 5 5 C 1.32217 * 119.92912 * 180.27526 * 4 3 2 6 6 C 1.38230 * 120.07864 * 359.74991 * 5 4 3 7 7 N 1.32207 * 120.14831 * 359.95840 * 6 5 4 8 8 C 1.31999 * 120.06245 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.03837 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47029 * 99.12037 * 9 8 7 11 11 C 1.46898 * 111.00455 * 162.55078 * 10 9 8 12 12 C 1.50701 * 109.47384 * 200.81724 * 11 10 9 13 13 H 1.07999 * 119.99995 * 4.67073 * 12 11 10 14 14 C 1.37874 * 119.99629 * 184.66605 * 12 11 10 15 15 N 1.31514 * 120.00491 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99659 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47141 * 90.00137 * 16 14 12 18 18 H 1.48500 * 109.46943 * 210.00095 * 16 14 12 19 19 H 1.48502 * 109.47197 * 330.00099 * 16 14 12 20 20 C 1.46904 * 110.99961 * 286.50686 * 10 9 8 21 21 C 1.52997 * 109.46712 * 321.09261 * 20 10 9 22 22 C 1.52995 * 109.47210 * 81.09032 * 20 10 9 23 23 H 1.09002 * 109.47451 * 59.99681 * 1 2 3 24 24 H 1.08999 * 109.47055 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47366 * 299.99606 * 1 2 3 26 26 H 1.07996 * 119.95316 * 179.73177 * 5 4 3 27 27 H 1.08005 * 119.92476 * 179.97438 * 6 5 4 28 28 H 1.08998 * 109.47297 * 339.12061 * 9 8 7 29 29 H 1.09002 * 109.47049 * 219.11843 * 9 8 7 30 30 H 1.09006 * 109.46554 * 320.81953 * 11 10 9 31 31 H 1.09001 * 109.47105 * 80.81590 * 11 10 9 32 32 H 0.97001 * 120.00091 * 179.97438 * 15 14 12 33 33 H 1.08999 * 109.47271 * 201.09252 * 20 10 9 34 34 H 1.09005 * 109.46835 * 188.50123 * 21 20 10 35 35 H 1.09003 * 109.47063 * 308.50109 * 21 20 10 36 36 H 1.09002 * 109.47592 * 68.50643 * 21 20 10 37 37 H 1.08998 * 109.47690 * 300.00138 * 22 20 10 38 38 H 1.09000 * 109.47173 * 60.00391 * 22 20 10 39 39 H 1.09001 * 109.47421 * 179.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3245 2.3213 0.0054 5 6 1.9275 3.4979 -0.0001 6 6 3.3080 3.5688 -0.0063 7 7 4.0298 2.4612 -0.0059 8 6 3.4336 1.2835 -0.0001 9 6 4.2569 0.0212 -0.0002 10 7 4.3464 -0.5051 1.3684 11 6 4.7680 -1.9123 1.3648 12 6 4.3694 -2.5595 2.6661 13 1 3.7887 -2.0057 3.3890 14 6 4.7460 -3.8585 2.9337 15 7 5.4534 -4.5327 2.0536 16 14 4.2513 -4.6610 4.5464 17 1 2.9400 -5.3379 4.3807 18 1 5.2781 -5.6599 4.9377 19 1 4.1425 -3.6231 5.6029 20 6 5.2495 0.3129 2.1890 21 6 6.4522 0.7448 1.3476 22 6 4.5038 1.5526 2.6868 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.3408 4.4046 -0.0001 27 1 3.7981 4.5313 -0.0112 28 1 5.2580 0.2404 -0.3714 29 1 3.7847 -0.7205 -0.6445 30 1 4.2867 -2.4336 0.5373 31 1 5.8504 -1.9670 1.2484 32 1 5.7187 -5.4465 2.2420 33 1 5.5940 -0.2710 3.0424 34 1 7.1928 1.2211 1.9902 35 1 6.8941 -0.1295 0.8698 36 1 6.1265 1.4508 0.5836 37 1 4.1593 2.1366 1.8334 38 1 3.6469 1.2449 3.2862 39 1 5.1737 2.1594 3.2961 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577458564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:43 Heat of formation + Delta-G solvation = 33.843377 kcal Electronic energy + Delta-G solvation = -21094.867530 eV Core-core repulsion = 18039.235638 eV Total energy + Delta-G solvation = -3055.631891 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.29456 -38.20533 -37.61843 -33.97744 -32.71528 -31.72877 -30.45637 -27.59528 -27.34721 -26.53079 -25.16312 -23.56107 -22.45007 -21.92376 -18.88097 -18.23246 -17.95225 -16.37920 -16.03858 -15.68694 -15.19019 -14.67987 -14.38517 -14.28050 -14.12945 -13.74284 -13.18783 -12.80407 -12.41285 -12.14521 -12.02588 -11.80256 -11.44401 -11.31686 -11.28649 -11.08169 -10.94634 -10.70779 -10.69696 -10.48204 -10.24566 -9.82358 -9.57984 -9.27637 -9.01966 -8.39498 -8.32560 -7.14922 -5.96110 -3.96550 0.98911 1.27198 3.18536 3.35645 3.41414 3.45777 3.79170 4.19527 4.29825 4.49034 4.65565 5.10645 5.11822 5.29758 5.38448 5.40396 5.45949 5.53434 5.71396 5.73149 5.83923 6.04476 6.11660 6.17319 6.22668 6.36038 6.40459 6.50004 6.64792 6.90196 6.97386 7.27360 7.30642 7.37537 7.45003 7.90175 7.92718 8.18430 8.28711 8.61048 9.12041 9.67078 11.14070 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.021911 B = 0.006297 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.593095 B = 4445.740315 C = 5103.286157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.276 6.276 3 C 0.293 3.707 4 N -0.504 5.504 5 C 0.078 3.922 6 C -0.005 4.005 7 N -0.398 5.398 8 C 0.102 3.898 9 C 0.100 3.900 10 N -0.520 5.520 11 C 0.195 3.805 12 C -0.498 4.498 13 H 0.062 0.938 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.275 1.275 20 C 0.085 3.915 21 C -0.183 4.183 22 C -0.151 4.151 23 H 0.053 0.947 24 H 0.099 0.901 25 H 0.057 0.943 26 H 0.166 0.834 27 H 0.166 0.834 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.026 0.974 31 H 0.000 1.000 32 H 0.260 0.740 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.913 14.692 -5.220 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.179 6.179 3 C 0.110 3.890 4 N -0.234 5.234 5 C -0.080 4.080 6 C -0.163 4.163 7 N -0.115 5.115 8 C -0.043 4.043 9 C -0.029 4.029 10 N -0.245 5.245 11 C 0.070 3.930 12 C -0.537 4.537 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.024 4.024 21 C -0.241 4.241 22 C -0.209 4.209 23 H 0.072 0.928 24 H 0.117 0.883 25 H 0.076 0.924 26 H 0.183 0.817 27 H 0.184 0.816 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.044 0.956 31 H 0.018 0.982 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.226 14.222 -5.034 16.320 hybrid contribution 0.203 -0.312 0.608 0.713 sum -6.023 13.910 -4.426 15.791 Atomic orbital electron populations 1.22893 0.77756 1.03323 1.01737 1.86479 1.22220 1.22790 1.86402 1.20692 0.90594 0.85440 0.92261 1.68075 1.40145 0.98683 1.16529 1.23329 0.93753 0.95105 0.95847 1.23448 0.92419 0.97950 1.02469 1.68281 1.38827 0.97549 1.06818 1.21557 0.89312 0.95003 0.98423 1.20975 0.97479 0.90496 0.93980 1.62244 1.50395 1.04786 1.07050 1.19769 0.94381 0.80913 0.97922 1.21154 1.32876 0.97210 1.02455 0.91972 1.24967 0.95382 0.97314 0.96971 1.69957 1.38218 1.10852 1.35022 0.86536 0.78099 0.79089 0.83896 1.20736 1.21412 1.19953 1.21531 0.90362 0.93744 0.96793 1.22473 0.98962 1.01470 1.01227 1.22189 1.00041 0.97696 1.00997 0.92823 0.88271 0.92424 0.81725 0.81640 0.92308 0.89456 0.95551 0.98174 0.93044 0.89760 0.93514 0.92907 0.91112 0.91982 0.93336 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.40 101.05 1.05 1.55 16 2 O -0.28 -4.77 9.71 -18.75 -0.18 -4.96 16 3 C 0.29 4.93 7.47 -16.94 -0.13 4.80 16 4 N -0.50 -7.39 9.40 -13.13 -0.12 -7.51 16 5 C 0.08 0.90 11.22 -17.39 -0.20 0.71 16 6 C -0.01 -0.06 10.80 -17.39 -0.19 -0.25 16 7 N -0.40 -6.05 7.04 -9.17 -0.06 -6.11 16 8 C 0.10 1.74 4.50 -82.21 -0.37 1.37 16 9 C 0.10 1.90 4.49 -4.97 -0.02 1.88 16 10 N -0.52 -11.39 4.29 -229.52 -0.99 -12.37 16 11 C 0.19 5.05 4.64 -4.98 -0.02 5.03 16 12 C -0.50 -14.09 8.58 -34.44 -0.30 -14.39 16 13 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 14 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 16 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.08 1.71 2.70 -67.71 -0.18 1.53 16 21 C -0.18 -3.27 7.82 37.16 0.29 -2.98 16 22 C -0.15 -2.75 9.02 37.15 0.33 -2.41 16 23 H 0.05 0.62 8.11 -51.93 -0.42 0.20 16 24 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 26 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 27 H 0.17 1.35 8.06 -52.48 -0.42 0.93 16 28 H 0.06 1.08 5.43 -51.93 -0.28 0.80 16 29 H 0.09 1.68 7.32 -51.93 -0.38 1.30 16 30 H 0.03 0.72 7.61 -51.93 -0.39 0.33 16 31 H 0.00 0.01 7.12 -51.93 -0.37 -0.36 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.08 1.91 7.30 -51.93 -0.38 1.53 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 1.00 7.09 -51.93 -0.37 0.64 16 36 H 0.07 1.20 5.39 -51.93 -0.28 0.92 16 37 H 0.06 1.07 3.28 -51.93 -0.17 0.90 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -31.53 313.24 -6.29 -37.82 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.55 Total: -0.73 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 0.17 Total: -1.72 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.44 Total: -52.03 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.18 Total: -4.96 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.53 -6.29 -37.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577458564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.666 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds