Wall clock time and date at job start Thu Apr 9 2020 14:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99662 * 2 1 4 4 C 1.52999 * 109.46947 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47346 * 65.00131 * 4 3 2 6 6 C 1.46503 * 120.00278 * 270.00405 * 5 4 3 7 7 C 1.50699 * 109.46776 * 269.99638 * 6 5 4 8 8 H 1.07998 * 120.00329 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00147 * 179.97438 * 7 6 5 10 10 N 1.31505 * 120.00258 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99516 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47560 * 89.99675 * 11 9 7 13 13 H 1.48502 * 109.46952 * 210.00090 * 11 9 7 14 14 H 1.48499 * 109.47357 * 329.99118 * 11 9 7 15 15 C 1.38993 * 119.99997 * 90.00062 * 5 4 3 16 16 C 1.39026 * 119.67263 * 185.00453 * 15 5 4 17 17 C 1.38455 * 119.21945 * 180.02562 * 16 15 5 18 18 C 1.38630 * 118.56975 * 359.97438 * 17 16 15 19 19 C 1.38737 * 119.27708 * 0.02562 * 18 17 16 20 20 O 1.35675 * 119.63687 * 179.97438 * 19 18 17 21 21 C 1.42901 * 116.99893 * 179.97438 * 20 19 18 22 22 N 1.32349 * 120.72600 * 0.25142 * 19 18 17 23 23 H 1.08997 * 109.46876 * 59.99873 * 1 2 3 24 24 H 1.08997 * 109.46615 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47129 * 299.99188 * 1 2 3 26 26 H 1.08996 * 109.47048 * 60.00478 * 3 2 1 27 27 H 1.09000 * 109.47513 * 300.00307 * 3 2 1 28 28 H 1.09003 * 109.47470 * 305.00227 * 4 3 2 29 29 H 1.09001 * 109.47500 * 185.00569 * 4 3 2 30 30 H 1.08999 * 109.47108 * 29.99468 * 6 5 4 31 31 H 1.08995 * 109.47112 * 149.99548 * 6 5 4 32 32 H 0.97005 * 120.00132 * 180.02562 * 10 9 7 33 33 H 1.07996 * 120.38588 * 0.04285 * 16 15 5 34 34 H 1.07998 * 120.71350 * 179.97438 * 17 16 15 35 35 H 1.08000 * 120.35943 * 180.02562 * 18 17 16 36 36 H 1.09006 * 109.46808 * 179.97438 * 21 20 19 37 37 H 1.08996 * 109.47352 * 299.99708 * 21 20 19 38 38 H 1.08996 * 109.47452 * 60.00161 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.1052 -0.8919 -1.3429 7 6 5.5010 -1.2976 -0.9451 8 1 6.2196 -0.5458 -0.6538 9 6 5.8605 -2.6287 -0.9519 10 7 7.0786 -2.9827 -0.6053 11 14 4.6174 -3.9291 -1.4550 12 1 4.7026 -4.1549 -2.9203 13 1 4.9114 -5.1975 -0.7408 14 1 3.2499 -3.4690 -1.1037 15 6 4.2705 1.3580 -2.3552 16 6 4.5865 0.7591 -3.5694 17 6 4.8791 1.5584 -4.6614 18 6 4.8455 2.9352 -4.5032 19 6 4.5224 3.4680 -3.2636 20 8 4.4879 4.8145 -3.1004 21 6 4.1482 5.3020 -1.8008 22 7 4.2528 2.6773 -2.2371 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6885 1.8465 -0.8899 28 1 3.8515 0.5683 0.8409 29 1 3.9785 2.1766 0.0890 30 1 3.3853 -1.3629 -0.6735 31 1 3.9120 -1.2112 -2.3670 32 1 7.3316 -3.9192 -0.6105 33 1 4.6032 -0.3169 -3.6598 34 1 5.1281 1.1188 -5.6159 35 1 5.0684 3.5860 -5.3358 36 1 4.1574 6.3920 -1.8078 37 1 3.1537 4.9485 -1.5286 38 1 4.8747 4.9375 -1.0746 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104123607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:53:40 Heat of formation + Delta-G solvation = -29.466702 kcal Electronic energy + Delta-G solvation = -20741.408912 eV Core-core repulsion = 17585.313028 eV Total energy + Delta-G solvation = -3156.095884 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.09980 -38.20126 -37.41983 -35.48698 -32.71255 -31.65888 -30.50305 -29.19168 -27.39089 -26.66403 -25.71255 -23.08339 -22.95090 -21.69244 -20.26428 -17.79683 -16.95454 -16.83279 -16.14221 -15.69780 -15.58857 -15.38770 -14.90125 -14.84049 -14.31109 -14.00121 -13.55926 -13.09475 -12.86946 -12.54027 -12.17507 -12.13191 -11.90294 -11.66060 -11.45017 -11.23239 -10.99975 -10.95152 -10.70722 -10.41984 -10.17561 -9.61867 -9.48275 -9.36121 -9.06310 -8.62219 -8.46540 -6.69584 -6.11945 -4.11725 1.94028 2.02547 3.25229 3.32578 3.37330 3.41987 3.74587 4.06221 4.36297 4.47246 4.98240 5.21332 5.30183 5.37080 5.40346 5.47751 5.49432 5.57065 5.60020 5.64710 5.73628 5.74442 5.79724 5.81979 5.99309 6.13036 6.36336 6.54334 6.66810 6.86989 6.92506 7.00536 7.38214 7.53201 7.57321 7.74259 8.25240 8.43375 8.69392 8.95015 9.47977 11.01110 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.015325 B = 0.007256 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.633743 B = 3857.958399 C = 4931.632749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.379 6.379 3 C 0.048 3.952 4 C 0.132 3.868 5 N -0.572 5.572 6 C 0.226 3.774 7 C -0.536 4.536 8 H 0.076 0.924 9 C 0.075 3.925 10 N -0.895 5.895 11 Si 0.869 3.131 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.261 1.261 15 C 0.454 3.546 16 C -0.259 4.259 17 C -0.010 4.010 18 C -0.272 4.272 19 C 0.356 3.644 20 O -0.315 6.315 21 C 0.044 3.956 22 N -0.608 5.608 23 H 0.035 0.965 24 H 0.081 0.919 25 H 0.035 0.965 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.578 10.828 -2.425 15.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C -0.030 4.030 4 C 0.008 3.992 5 N -0.279 5.279 6 C 0.105 3.895 7 C -0.574 4.574 8 H 0.094 0.906 9 C -0.128 4.128 10 N -0.533 5.533 11 Si 0.696 3.304 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.185 1.185 15 C 0.217 3.783 16 C -0.284 4.284 17 C -0.035 4.035 18 C -0.296 4.296 19 C 0.176 3.824 20 O -0.222 6.222 21 C -0.051 4.051 22 N -0.343 5.343 23 H 0.053 0.947 24 H 0.100 0.900 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.541 10.916 -1.594 15.259 hybrid contribution -0.535 -0.922 -0.680 1.265 sum -11.076 9.994 -2.274 15.091 Atomic orbital electron populations 1.22678 0.82197 1.02315 0.99244 1.88030 1.18663 1.27818 1.95215 1.23109 0.95675 0.84692 0.99513 1.21314 0.90503 0.99693 0.87704 1.46700 1.66717 1.06460 1.08030 1.19804 0.97892 0.74313 0.97485 1.21463 0.96142 0.93608 1.46232 0.90633 1.24846 0.95082 0.98260 0.94627 1.69897 1.18158 1.17347 1.47944 0.86942 0.82645 0.81667 0.79168 1.19990 1.21019 1.18489 1.17932 0.87433 0.85683 0.87219 1.21422 1.12644 1.01833 0.92528 1.21004 0.92369 0.92048 0.98059 1.20476 1.17233 0.95404 0.96505 1.19302 0.90666 0.82864 0.89523 1.86204 1.84619 1.17755 1.33664 1.22710 1.00874 0.98335 0.83221 1.66574 1.29863 1.05133 1.32699 0.94664 0.89998 0.94607 0.93292 0.93588 0.89717 0.89105 0.93478 0.95567 0.92528 0.84282 0.85079 0.85614 0.89451 0.92800 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.49 9.53 -35.23 -0.34 -6.82 16 3 C 0.05 0.75 6.28 37.16 0.23 0.98 16 4 C 0.13 2.39 5.88 -4.04 -0.02 2.36 16 5 N -0.57 -12.08 2.53 -175.23 -0.44 -12.52 16 6 C 0.23 5.33 3.89 -5.19 -0.02 5.31 16 7 C -0.54 -14.85 9.94 -34.44 -0.34 -15.19 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 9 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 10 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 11 Si 0.87 20.76 27.47 -169.99 -4.67 16.09 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 15 C 0.45 9.33 7.37 -155.01 -1.14 8.19 16 16 C -0.26 -5.11 9.27 -39.21 -0.36 -5.47 16 17 C -0.01 -0.16 10.16 -39.36 -0.40 -0.56 16 18 C -0.27 -4.49 10.03 -39.25 -0.39 -4.88 16 19 C 0.36 6.31 7.48 -17.14 -0.13 6.18 16 20 O -0.32 -4.96 10.47 -18.73 -0.20 -5.16 16 21 C 0.04 0.55 10.38 101.05 1.05 1.60 16 22 N -0.61 -11.55 7.92 -12.51 -0.10 -11.65 16 23 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.60 8.07 -51.93 -0.42 1.18 16 29 H 0.09 1.55 7.29 -51.93 -0.38 1.17 16 30 H 0.05 1.14 6.17 -51.93 -0.32 0.82 16 31 H 0.03 0.62 5.40 -51.93 -0.28 0.33 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.14 2.84 6.01 -52.49 -0.32 2.52 16 34 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.66 8.11 -51.93 -0.42 0.24 16 38 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 320.29 15.07 4.83 4.83 Total: -1.00 -31.53 320.29 -6.19 -37.72 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.53 Total: 1.68 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -0.52 Total: 2.05 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.23 Total: -50.38 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.53 Total: -11.98 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.53 -6.19 -37.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104123607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.256 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds