Wall clock time and date at job start Thu Apr 9 2020 14:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00156 * 2 1 4 4 H 1.09001 * 109.47054 * 330.00295 * 3 2 1 5 5 C 1.53001 * 109.46874 * 89.99953 * 3 2 1 6 6 C 1.52999 * 109.47029 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47348 * 300.00133 * 6 5 3 8 8 C 1.53002 * 109.46817 * 59.99809 * 7 6 5 9 9 C 1.52993 * 109.47569 * 210.00313 * 3 2 1 10 10 H 1.09001 * 109.47261 * 59.99768 * 9 3 2 11 11 C 1.50705 * 109.46819 * 299.99729 * 9 3 2 12 12 O 1.21288 * 120.00435 * 341.34139 * 11 9 3 13 13 N 1.34778 * 119.99693 * 161.33528 * 11 9 3 14 14 C 1.37102 * 120.00085 * 185.53018 * 13 11 9 15 15 H 1.08004 * 119.99481 * 5.84507 * 14 13 11 16 16 C 1.38942 * 119.99975 * 185.84312 * 14 13 11 17 17 N 1.31411 * 120.00378 * 17.46315 * 16 14 13 18 18 Si 1.86807 * 119.99548 * 197.46571 * 16 14 13 19 19 H 1.48500 * 109.47170 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47288 * 120.00236 * 18 16 14 21 21 H 1.48506 * 109.46861 * 239.99865 * 18 16 14 22 22 C 1.46505 * 120.00074 * 5.54110 * 13 11 9 23 23 C 1.47195 * 109.47078 * 94.57895 * 22 13 11 24 24 N 6.66875 * 154.75464 * 321.50476 * 2 1 3 25 25 H 1.09002 * 109.46895 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47377 * 299.99877 * 1 2 3 27 27 H 1.08996 * 109.47252 * 59.99794 * 1 2 3 28 28 H 1.08991 * 109.47031 * 60.00410 * 5 3 2 29 29 H 1.09009 * 109.47257 * 300.00043 * 5 3 2 30 30 H 1.09001 * 109.47311 * 60.00090 * 6 5 3 31 31 H 1.09001 * 109.47173 * 179.97438 * 6 5 3 32 32 H 1.08995 * 109.47459 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.46879 * 300.00221 * 7 6 5 34 34 H 1.09004 * 109.46469 * 180.02562 * 8 7 6 35 35 H 1.08991 * 109.47089 * 60.00423 * 8 7 6 36 36 H 0.96996 * 120.00013 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.46379 * 214.58066 * 22 13 11 38 38 H 1.08993 * 109.46784 * 334.57614 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7713 1.4425 6 6 2.8394 3.1693 1.4426 7 6 4.1880 3.1277 0.7211 8 6 3.9805 2.6618 -0.7214 9 6 3.3588 1.2634 -0.7213 10 1 3.2110 0.9314 -1.7489 11 6 4.2786 0.3040 -0.0108 12 8 4.0447 -0.0264 1.1325 13 7 5.3611 -0.1870 -0.6461 14 6 6.1343 -1.1450 -0.0425 15 1 5.8249 -1.5743 0.8990 16 6 7.3158 -1.5634 -0.6421 17 7 7.8718 -0.8307 -1.5807 18 14 8.1138 -3.1678 -0.1141 19 1 7.2963 -3.7998 0.9524 20 1 8.2020 -4.0839 -1.2795 21 1 9.4781 -2.8946 0.4051 22 6 5.7118 0.3030 -1.9815 23 6 6.6990 1.3883 -1.8623 24 7 7.4608 2.2260 -1.7704 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 2.8829 1.0775 1.9563 29 1 1.2567 1.8014 1.9564 30 1 2.1738 3.8630 0.9289 31 1 2.9867 3.5014 2.4703 32 1 4.6311 4.1235 0.7216 33 1 4.8536 2.4340 1.2348 34 1 4.9414 2.6318 -1.2352 35 1 3.3149 3.3555 -1.2350 36 1 8.6964 -1.1231 -1.9995 37 1 6.1367 -0.5120 -2.5675 38 1 4.8168 0.6787 -2.4772 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293355152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:53:36 Heat of formation + Delta-G solvation = -39.792902 kcal Electronic energy + Delta-G solvation = -21739.517623 eV Core-core repulsion = 18582.973961 eV Total energy + Delta-G solvation = -3156.543662 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.04932 -37.64675 -35.95267 -35.51401 -34.14661 -32.00147 -30.44934 -29.54623 -27.39849 -26.19503 -25.02974 -22.62090 -21.91119 -20.46448 -18.55402 -17.88972 -16.41686 -16.23535 -16.07649 -15.11878 -14.78827 -14.65543 -14.24228 -13.99822 -13.58966 -13.20332 -13.07896 -12.81739 -12.73606 -12.04859 -11.98010 -11.66391 -11.46196 -11.44193 -11.28384 -11.16759 -10.93857 -10.63071 -10.48055 -10.43999 -10.26955 -10.26372 -10.06137 -9.92659 -9.18491 -9.03301 -8.11119 -8.04861 -6.42014 -3.90492 3.12559 3.25299 3.31857 3.64011 3.86050 4.09244 4.11232 4.18888 4.76186 4.94842 5.02158 5.21752 5.32769 5.38070 5.41806 5.47275 5.58037 5.60163 5.65469 5.74888 5.81424 5.83527 5.85203 6.01540 6.12600 6.24516 6.28069 6.43183 6.49502 6.62534 6.70083 6.76877 7.11904 7.52104 7.62129 7.95298 8.37586 8.87380 9.09784 9.28652 9.84525 10.60505 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020994 B = 0.007598 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.419227 B = 3684.339948 C = 4351.083077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.119 3.881 4 H 0.052 0.948 5 C -0.166 4.166 6 C -0.108 4.108 7 C -0.122 4.122 8 C -0.109 4.109 9 C -0.105 4.105 10 H 0.088 0.912 11 C 0.476 3.524 12 O -0.556 6.556 13 N -0.450 5.450 14 C -0.299 4.299 15 H 0.111 0.889 16 C 0.026 3.974 17 N -0.891 5.891 18 Si 0.930 3.070 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.284 1.284 22 C 0.217 3.783 23 C 0.259 3.741 24 N -0.485 5.485 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.127 0.873 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.271 0.729 37 H 0.136 0.864 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.527 3.870 -1.842 12.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.061 3.939 4 H 0.070 0.930 5 C -0.203 4.203 6 C -0.146 4.146 7 C -0.159 4.159 8 C -0.147 4.147 9 C -0.127 4.127 10 H 0.106 0.894 11 C 0.264 3.736 12 O -0.438 6.438 13 N -0.170 5.170 14 C -0.426 4.426 15 H 0.128 0.872 16 C -0.175 4.175 17 N -0.532 5.532 18 Si 0.756 3.244 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.210 1.210 22 C 0.089 3.911 23 C -0.058 4.058 24 N -0.166 5.166 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.145 0.855 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.153 0.847 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.229 4.713 -1.231 11.329 hybrid contribution 0.145 -0.816 -0.031 0.829 sum -10.084 3.897 -1.263 10.884 Atomic orbital electron populations 1.22709 0.82482 1.02155 0.99147 1.88073 1.18158 1.27605 1.94907 1.21767 0.92402 0.83914 0.95858 0.93026 1.22557 1.01890 0.98271 0.97622 1.21407 0.96407 0.96800 0.99940 1.21530 0.97755 1.01078 0.95545 1.21548 1.01150 0.94122 0.97914 1.21370 0.94789 0.96257 1.00292 0.89382 1.19655 0.83363 0.83614 0.86919 1.90339 1.74302 1.61520 1.17660 1.43695 1.23675 1.35607 1.14057 1.19858 1.02478 1.12839 1.07429 0.87163 1.25206 0.96092 0.99353 0.96869 1.69759 1.19575 1.36094 1.27793 0.85795 0.78643 0.81315 0.78597 1.19200 1.20518 1.21034 1.19023 0.91590 0.92625 0.87845 1.29143 0.93033 0.91253 0.92415 1.80888 1.11313 1.15894 1.08461 0.90117 0.94599 0.94753 0.85535 0.93520 0.93140 0.92300 0.92407 0.90919 0.90907 0.91593 0.91748 0.84657 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.82 101.05 1.09 1.50 16 2 O -0.37 -6.47 9.72 -42.46 -0.41 -6.88 16 3 C 0.12 1.92 2.19 -26.73 -0.06 1.87 16 4 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 5 C -0.17 -2.76 5.24 -26.73 -0.14 -2.90 16 6 C -0.11 -1.59 5.92 -26.73 -0.16 -1.74 16 7 C -0.12 -2.02 5.70 -26.73 -0.15 -2.18 16 8 C -0.11 -1.75 5.28 -26.71 -0.14 -1.89 16 9 C -0.11 -1.84 1.92 -91.75 -0.18 -2.01 16 10 H 0.09 1.38 6.59 -51.93 -0.34 1.04 16 11 C 0.48 10.60 5.29 -10.98 -0.06 10.55 16 12 O -0.56 -13.96 12.33 -1.68 -0.02 -13.98 16 13 N -0.45 -10.55 2.60 -117.93 -0.31 -10.86 16 14 C -0.30 -7.77 9.47 -14.93 -0.14 -7.91 16 15 H 0.11 3.04 7.26 -52.48 -0.38 2.66 16 16 C 0.03 0.64 5.14 -17.47 -0.09 0.55 16 17 N -0.89 -22.34 8.51 55.50 0.47 -21.87 16 18 Si 0.93 20.15 29.59 -169.99 -5.03 15.12 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.22 4.43 4.79 -6.83 -0.03 4.40 16 23 C 0.26 5.80 11.01 -20.76 -0.23 5.57 16 24 N -0.48 -11.59 18.54 42.15 0.78 -10.81 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.41 7.87 -51.93 -0.41 0.01 16 27 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 28 H 0.13 2.61 4.95 -51.96 -0.26 2.35 16 29 H 0.05 0.69 7.87 -51.92 -0.41 0.28 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.47 7.05 -51.93 -0.37 1.11 16 34 H 0.07 1.28 4.85 -51.93 -0.25 1.03 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 37 H 0.14 2.88 6.18 -51.93 -0.32 2.56 16 38 H 0.08 1.26 5.69 -51.93 -0.30 0.96 16 LS Contribution 298.59 15.07 4.50 4.50 Total: -1.00 -29.91 298.59 -5.40 -35.32 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.10 Total: 3.68 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -0.28 Total: 5.79 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.95 Total: -43.54 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.43 Total: -20.86 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.91 -5.40 -35.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293355152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.475 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds