Wall clock time and date at job start Thu Apr 9 2020 14:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47382 * 2 1 4 4 N 1.46499 * 109.47425 * 120.00241 * 2 1 3 5 5 C 1.46764 * 124.35220 * 119.72426 * 4 2 1 6 6 C 1.54660 * 105.38403 * 162.85728 * 5 4 2 7 7 C 1.54622 * 101.68433 * 25.76111 * 6 5 4 8 8 H 1.09007 * 110.48540 * 93.67067 * 7 6 5 9 9 N 1.46904 * 110.60096 * 216.25410 * 7 6 5 10 10 C 1.46893 * 111.00053 * 201.29696 * 9 7 6 11 11 C 1.53003 * 109.47062 * 174.65696 * 10 9 7 12 12 C 1.50699 * 115.54793 * 39.57702 * 11 10 9 13 13 H 1.08000 * 119.99878 * 265.25340 * 12 11 10 14 14 C 1.37876 * 119.99852 * 85.25565 * 12 11 10 15 15 N 1.31503 * 120.00272 * 353.32631 * 14 12 11 16 16 Si 1.86803 * 119.99732 * 173.32653 * 14 12 11 17 17 H 1.48507 * 109.47149 * 89.99942 * 16 14 12 18 18 H 1.48499 * 109.47195 * 209.99666 * 16 14 12 19 19 H 1.48496 * 109.47398 * 330.00071 * 16 14 12 20 20 C 1.52998 * 117.49823 * 253.87028 * 11 10 9 21 21 C 1.53003 * 117.49784 * 185.24634 * 11 10 9 22 22 C 1.34418 * 124.34864 * 300.02389 * 4 2 1 23 23 O 1.21286 * 124.94230 * 0.38449 * 22 4 2 24 24 H 1.08997 * 109.47336 * 59.99640 * 1 2 3 25 25 H 1.09001 * 109.46620 * 300.00148 * 1 2 3 26 26 H 1.09000 * 109.47629 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47073 * 240.00133 * 2 1 3 28 28 H 1.09001 * 109.47363 * 60.00307 * 3 2 1 29 29 H 1.08997 * 109.47157 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46913 * 299.99871 * 3 2 1 31 31 H 1.09009 * 110.24541 * 281.98295 * 5 4 2 32 32 H 1.08992 * 110.24680 * 43.97913 * 5 4 2 33 33 H 1.09007 * 111.18686 * 267.58873 * 6 5 4 34 34 H 1.08993 * 110.82298 * 143.77924 * 6 5 4 35 35 H 1.00895 * 110.99819 * 77.34524 * 9 7 6 36 36 H 1.08999 * 109.47312 * 294.65938 * 10 9 7 37 37 H 1.08997 * 109.47163 * 54.65833 * 10 9 7 38 38 H 0.97001 * 120.00305 * 185.06354 * 15 14 12 39 39 H 1.09001 * 117.50386 * 359.97438 * 20 11 10 40 40 H 1.08999 * 117.49947 * 145.02025 * 20 11 10 41 41 H 1.09001 * 117.49648 * 214.97894 * 21 11 10 42 42 H 1.08995 * 117.50100 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8609 -1.8921 1.1727 6 6 3.4726 -1.9920 2.5896 7 6 2.4203 -1.2419 3.4386 8 1 1.6968 -1.9425 3.8557 9 7 3.0710 -0.4774 4.5111 10 6 2.1260 -0.1849 5.5970 11 6 2.8685 0.4927 6.7505 12 6 3.9158 1.4986 6.3474 13 1 4.9492 1.1970 6.2609 14 6 3.5547 2.8039 6.0892 15 7 2.2841 3.1423 6.0657 16 14 4.8702 4.0918 5.7725 17 1 5.1683 4.1480 4.3188 18 1 4.3845 5.4184 6.2298 19 1 6.1039 3.7327 6.5171 20 6 3.1346 -0.3405 8.0058 21 6 2.0807 0.7683 8.0328 22 6 1.7477 -0.3086 2.4561 23 8 1.0641 0.6457 2.7610 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3632 0.5139 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 2.2559 -2.7729 0.9571 32 1 3.6503 -1.7848 0.4289 33 1 4.4403 -1.4924 2.6371 34 1 3.5568 -3.0326 2.9028 35 1 3.4827 0.3708 4.1519 36 1 1.3435 0.4786 5.2289 37 1 1.6784 -1.1143 5.9492 38 1 2.0265 4.0425 5.8121 39 1 2.7804 -1.3713 8.0101 40 1 4.0675 -0.1613 8.5404 41 1 2.3202 1.6770 8.5851 42 1 1.0336 0.4665 8.0548 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708705708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:54:20 Heat of formation + Delta-G solvation = -29.255966 kcal Electronic energy + Delta-G solvation = -21407.508486 eV Core-core repulsion = 18387.254835 eV Total energy + Delta-G solvation = -3020.253651 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.57903 -38.66352 -37.39871 -36.56860 -34.14713 -33.93139 -30.24107 -28.24680 -28.16942 -27.33826 -25.31218 -23.20474 -22.86279 -22.37773 -20.95869 -19.83375 -18.15731 -17.69766 -17.16404 -16.60011 -16.42015 -15.96700 -15.71284 -15.09291 -14.86513 -14.64445 -14.53022 -14.24956 -13.98925 -13.74457 -13.44311 -13.13225 -13.03663 -12.88208 -12.86429 -12.67821 -12.49418 -12.31008 -12.23030 -12.12601 -11.97904 -11.83090 -11.25861 -10.92987 -10.74785 -10.38570 -9.91439 -9.61488 -8.99457 -8.04417 -6.14604 1.37757 1.40027 1.49702 1.64023 2.11431 2.43213 3.20756 3.29347 3.52583 3.68924 3.78960 3.99900 4.08336 4.19693 4.21710 4.30265 4.38452 4.57861 4.64054 4.65444 4.68669 4.78208 4.79997 4.85189 4.85968 4.92877 5.04861 5.13128 5.19410 5.22417 5.25286 5.28727 5.33703 5.64397 5.67513 5.80405 5.82238 6.22760 6.29369 6.49922 6.55877 6.92715 7.31333 7.51798 9.01971 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.006653 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.880236 B = 4207.305707 C = 4905.474496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 C -0.165 4.165 4 N -0.617 5.617 5 C 0.103 3.897 6 C -0.107 4.107 7 C 0.045 3.955 8 H 0.108 0.892 9 N -0.640 5.640 10 C 0.118 3.882 11 C 0.023 3.977 12 C -0.490 4.490 13 H 0.056 0.944 14 C 0.022 3.978 15 N -0.905 5.905 16 Si 0.943 3.057 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.263 1.263 20 C -0.178 4.178 21 C -0.173 4.173 22 C 0.472 3.528 23 O -0.569 6.569 24 H 0.086 0.914 25 H 0.028 0.972 26 H 0.065 0.935 27 H 0.127 0.873 28 H 0.024 0.976 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.339 0.661 36 H 0.000 1.000 37 H 0.053 0.947 38 H 0.253 0.747 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.038 -12.599 -14.397 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 C -0.223 4.223 4 N -0.352 5.352 5 C -0.019 4.019 6 C -0.146 4.146 7 C -0.069 4.069 8 H 0.126 0.874 9 N -0.269 5.269 10 C -0.012 4.012 11 C 0.023 3.977 12 C -0.528 4.528 13 H 0.074 0.926 14 C -0.178 4.178 15 N -0.543 5.543 16 Si 0.769 3.231 17 H -0.206 1.206 18 H -0.217 1.217 19 H -0.188 1.188 20 C -0.215 4.215 21 C -0.211 4.211 22 C 0.258 3.742 23 O -0.447 6.447 24 H 0.104 0.896 25 H 0.047 0.953 26 H 0.084 0.916 27 H 0.145 0.855 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.137 0.863 35 H 0.157 0.843 36 H 0.018 0.982 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.808 -12.457 -13.953 18.723 hybrid contribution -0.437 2.190 -0.152 2.238 sum 0.372 -10.267 -14.105 17.450 Atomic orbital electron populations 1.22117 0.95264 1.02391 1.02146 1.21115 0.94213 0.92605 0.87427 1.22152 1.01172 0.96992 1.02015 1.48690 1.51736 1.29506 1.05278 1.22443 0.94365 0.86670 0.98374 1.22673 0.97429 1.02525 0.91933 1.22695 0.97432 0.95725 0.91073 0.87408 1.60797 1.31089 1.26695 1.08326 1.21221 0.92376 0.95711 0.91889 1.18953 0.96884 0.96017 0.85893 1.20548 0.93217 0.92588 1.46457 0.92627 1.25679 0.96588 1.00089 0.95430 1.70141 1.16733 1.19415 1.47994 0.85784 0.80249 0.78837 0.78184 1.20594 1.21703 1.18771 1.22990 0.99075 0.94778 1.04670 1.22415 0.94712 0.98335 1.05639 1.22592 0.80089 0.85545 0.85980 1.90734 1.40657 1.30967 1.82319 0.89556 0.95293 0.91569 0.85525 0.95647 0.92530 0.89393 0.88502 0.87975 0.90072 0.86330 0.84279 0.98175 0.92895 0.93843 0.89113 0.90543 0.92642 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 9.20 71.98 0.66 -3.13 16 2 C 0.15 3.34 3.47 44.99 0.16 3.49 16 3 C -0.17 -4.42 9.20 71.98 0.66 -3.76 16 4 N -0.62 -16.06 2.83 -793.69 -2.25 -18.30 16 5 C 0.10 1.70 7.31 86.89 0.64 2.33 16 6 C -0.11 -2.24 6.90 31.71 0.22 -2.02 16 7 C 0.04 1.45 3.23 44.90 0.14 1.60 16 8 H 0.11 3.30 7.79 -2.38 -0.02 3.29 16 9 N -0.64 -26.69 6.06 -491.62 -2.98 -29.67 16 10 C 0.12 5.62 5.63 86.31 0.49 6.11 16 11 C 0.02 1.19 1.76 -52.93 -0.09 1.09 16 12 C -0.49 -27.24 7.47 25.60 0.19 -27.05 16 13 H 0.06 3.08 7.82 -2.91 -0.02 3.05 16 14 C 0.02 1.27 5.39 84.66 0.46 1.73 16 15 N -0.90 -55.46 12.93 21.45 0.28 -55.18 16 16 Si 0.94 45.44 29.55 68.60 2.03 47.47 16 17 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 18 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 19 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 20 C -0.18 -7.89 9.88 30.60 0.30 -7.58 16 21 C -0.17 -8.64 9.46 30.60 0.29 -8.35 16 22 C 0.47 17.35 6.78 87.90 0.60 17.94 16 23 O -0.57 -27.64 14.10 -3.05 -0.04 -27.68 16 24 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.03 0.94 6.77 -2.39 -0.02 0.92 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.13 1.78 8.07 -2.39 -0.02 1.76 16 28 H 0.02 0.92 6.80 -2.39 -0.02 0.91 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.86 8.09 -2.38 -0.02 1.84 16 34 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.34 16.27 7.47 -89.70 -0.67 15.60 16 36 H 0.00 0.00 7.22 -2.39 -0.02 -0.02 16 37 H 0.05 2.28 7.76 -2.39 -0.02 2.26 16 38 H 0.25 15.13 8.32 -92.71 -0.77 14.36 16 39 H 0.09 3.50 8.08 -2.39 -0.02 3.48 16 40 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.05 2.99 8.14 -2.39 -0.02 2.97 16 42 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -73.34 338.06 2.06 -71.28 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.32 Total: 29.69 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 4.71 Total: -17.60 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -4.95 Total: -103.16 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.04 Total: -27.68 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.34 2.06 -71.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708705708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.024 kcal (2) G-P(sol) polarization free energy of solvation -73.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds