Wall clock time and date at job start Thu Apr 9 2020 14:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.38425 * 126.30064 * 2 1 4 4 H 0.97005 * 126.24621 * 359.93549 * 3 2 1 5 5 C 1.34800 * 107.51690 * 179.97438 * 3 2 1 6 6 O 1.21668 * 125.85790 * 179.97438 * 5 3 2 7 7 O 1.34221 * 108.29633 * 0.26128 * 5 3 2 8 8 C 1.34465 * 126.29117 * 179.97438 * 2 1 3 9 9 C 1.47641 * 125.95042 * 0.02562 * 8 2 1 10 10 C 1.36204 * 126.01022 * 179.97438 * 9 8 2 11 11 N 1.37177 * 106.90232 * 179.97438 * 10 9 8 12 12 C 1.37430 * 126.35031 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00213 * 154.97086 * 12 11 10 14 14 C 1.38629 * 120.00003 * 334.96661 * 12 11 10 15 15 N 1.31538 * 120.00056 * 170.10559 * 14 12 11 16 16 Si 1.86801 * 120.00045 * 350.10502 * 14 12 11 17 17 H 1.48503 * 109.47251 * 85.19310 * 16 14 12 18 18 H 1.48500 * 109.47305 * 205.19331 * 16 14 12 19 19 H 1.48507 * 109.47001 * 325.19462 * 16 14 12 20 20 C 1.37160 * 107.29947 * 0.02562 * 11 10 9 21 21 S 1.76198 * 125.66518 * 179.97438 * 20 11 10 22 22 N 1.31171 * 108.67036 * 359.76238 * 20 11 10 23 23 H 1.09004 * 109.46854 * 0.03190 * 1 2 3 24 24 H 1.08999 * 109.46831 * 120.02584 * 1 2 3 25 25 H 1.08998 * 109.47083 * 240.03064 * 1 2 3 26 26 H 1.07996 * 126.55217 * 0.02562 * 10 9 8 27 27 H 0.97005 * 120.00102 * 180.02562 * 15 14 12 28 28 H 1.40994 * 100.00067 * 95.19445 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3265 1.1156 0.0000 4 1 2.0356 2.0410 -0.0009 5 6 3.6028 0.6815 0.0006 6 8 4.5950 1.3856 0.0003 7 8 3.5913 -0.6606 -0.0049 8 6 2.3029 -1.0838 0.0005 9 6 1.8526 -2.4899 0.0006 10 6 2.6576 -3.5886 0.0006 11 7 1.8347 -4.6860 0.0013 12 6 2.2315 -6.0018 0.0010 13 1 1.5764 -6.7635 0.3972 14 6 3.4727 -6.3513 -0.5080 15 7 3.9351 -7.5705 -0.3345 16 14 4.4886 -5.0910 -1.4401 17 1 5.2751 -4.2790 -0.4772 18 1 5.4127 -5.7894 -2.3693 19 1 3.5854 -4.2025 -2.2150 20 6 0.5423 -4.2267 0.0011 21 16 -0.9052 -5.2314 0.0011 22 7 0.5628 -2.9151 0.0055 23 1 -0.3633 1.0277 -0.0006 24 1 -0.3633 -0.5142 -0.8898 25 1 -0.3633 -0.5133 0.8902 26 1 3.7376 -3.5946 0.0009 27 1 4.8037 -7.8150 -0.6903 28 1 -1.1781 -5.2676 1.3839 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257600607.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:55:13 Heat of formation + Delta-G solvation = 27.098998 kcal Electronic energy + Delta-G solvation = -17799.752474 eV Core-core repulsion = 14751.770234 eV Total energy + Delta-G solvation = -3047.982240 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.92500 -40.90495 -37.44442 -35.62052 -34.40954 -32.26756 -30.95831 -29.19263 -26.62732 -25.30138 -23.18777 -22.07953 -21.24444 -20.13773 -18.52434 -17.80158 -17.02607 -16.54238 -16.11628 -15.75684 -15.06377 -14.71531 -14.51184 -14.00157 -13.42688 -13.24137 -13.11583 -12.74901 -12.65787 -12.55205 -12.02447 -11.43975 -11.20937 -11.13420 -10.75782 -10.64441 -10.30436 -9.97391 -9.42250 -9.05790 -8.42167 -7.65713 -7.17485 -7.13426 -4.89628 1.74723 1.95993 2.47497 2.62692 2.65304 2.85581 2.96665 3.03852 3.21270 3.28266 3.65184 3.92375 4.21104 4.52500 4.99802 5.04214 5.35236 5.69646 5.86793 5.89166 5.89592 6.24485 6.29712 6.54074 6.75433 7.09417 7.27844 7.42625 7.70649 7.96891 8.20444 8.55204 8.69859 9.85833 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.018379 B = 0.008039 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.088546 B = 3482.369163 C = 4885.486187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.003 3.997 3 N -0.641 5.641 4 H 0.435 0.565 5 C 0.613 3.387 6 O -0.516 6.516 7 O -0.234 6.234 8 C 0.090 3.910 9 C 0.034 3.966 10 C -0.088 4.088 11 N -0.229 5.229 12 C -0.330 4.330 13 H 0.141 0.859 14 C 0.078 3.922 15 N -0.812 5.812 16 Si 0.893 3.107 17 H -0.260 1.260 18 H -0.278 1.278 19 H -0.245 1.245 20 C 0.101 3.899 21 S -0.026 6.026 22 N -0.437 5.437 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.168 0.832 27 H 0.294 0.706 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.031 8.499 0.078 10.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.099 4.099 3 N -0.295 5.295 4 H 0.277 0.723 5 C 0.368 3.632 6 O -0.403 6.403 7 O -0.137 6.137 8 C 0.039 3.961 9 C -0.104 4.104 10 C -0.236 4.236 11 N 0.107 4.893 12 C -0.460 4.460 13 H 0.158 0.842 14 C -0.139 4.139 15 N -0.439 5.439 16 Si 0.719 3.281 17 H -0.186 1.186 18 H -0.204 1.204 19 H -0.169 1.169 20 C -0.261 4.261 21 S 0.126 5.874 22 N -0.160 5.160 23 H 0.078 0.922 24 H 0.107 0.893 25 H 0.105 0.895 26 H 0.184 0.816 27 H 0.104 0.896 28 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -6.565 8.116 -0.179 10.441 hybrid contribution 2.113 0.968 0.548 2.388 sum -4.452 9.084 0.369 10.123 Atomic orbital electron populations 1.20165 0.84986 1.01599 1.05040 1.20781 0.95295 0.83852 1.09952 1.43774 1.06509 1.09960 1.69267 0.72290 1.18598 0.84183 0.80389 0.80065 1.91147 1.35105 1.55499 1.58543 1.85017 1.28250 1.21996 1.78430 1.18028 0.78415 0.91607 1.08049 1.17045 0.90149 0.86717 1.16452 1.22523 0.97364 0.86348 1.17326 1.42269 1.04817 1.06188 1.36032 1.19776 1.03874 0.80816 1.41582 0.84203 1.25403 0.96318 0.97195 0.94948 1.69672 1.19071 1.18238 1.36937 0.86633 0.80443 0.80238 0.80773 1.18611 1.20445 1.16888 1.23661 0.87686 0.91420 1.23373 1.86304 1.25820 1.63886 1.11361 1.70740 1.18491 1.07832 1.18904 0.92200 0.89311 0.89542 0.81570 0.89556 0.96261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.74 9.21 36.01 0.33 -0.41 15 2 C 0.00 0.04 7.25 -80.94 -0.59 -0.54 15 3 N -0.64 -8.75 6.18 -12.46 -0.08 -8.83 15 4 H 0.44 4.21 8.96 -40.82 -0.37 3.84 15 5 C 0.61 10.90 9.52 54.07 0.51 11.42 15 6 O -0.52 -10.30 18.05 -19.02 -0.34 -10.64 15 7 O -0.23 -4.61 10.76 -22.09 -0.24 -4.85 15 8 C 0.09 1.70 7.13 -37.08 -0.26 1.44 15 9 C 0.03 0.73 6.92 -83.00 -0.57 0.16 15 10 C -0.09 -2.02 8.45 -15.89 -0.13 -2.16 15 11 N -0.23 -5.39 2.77 -61.58 -0.17 -5.56 15 12 C -0.33 -8.08 10.24 -14.90 -0.15 -8.23 15 13 H 0.14 3.50 7.94 -52.49 -0.42 3.08 15 14 C 0.08 1.89 5.49 -17.53 -0.10 1.80 15 15 N -0.81 -20.05 13.96 55.48 0.77 -19.28 15 16 Si 0.89 19.47 24.63 -169.99 -4.19 15.28 15 17 H -0.26 -5.55 6.48 56.52 0.37 -5.18 15 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 19 H -0.25 -5.55 6.70 56.52 0.38 -5.17 15 20 C 0.10 2.20 8.20 -87.85 -0.72 1.48 15 21 S -0.03 -0.48 25.76 -107.50 -2.77 -3.24 15 22 N -0.44 -9.18 10.18 -9.66 -0.10 -9.28 15 23 H 0.06 0.53 8.14 -51.93 -0.42 0.10 15 24 H 0.09 1.16 8.12 -51.93 -0.42 0.73 15 25 H 0.09 1.11 8.11 -51.93 -0.42 0.69 15 26 H 0.17 3.79 4.20 -52.49 -0.22 3.57 15 27 H 0.29 6.64 8.31 -40.82 -0.34 6.30 15 28 H 0.07 1.18 9.55 96.90 0.93 2.11 15 LS Contribution 268.32 15.07 4.04 4.04 Total: -1.00 -27.49 268.32 -5.28 -32.77 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -0.54 Total: 4.63 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -1.68 Total: 4.95 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.43 Total: -42.94 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.58 Total: -15.49 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.19 Total: 15.28 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.77 Total: -3.24 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.49 -5.28 -32.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257600607.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.867 kcal (2) G-P(sol) polarization free energy of solvation -27.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds