Wall clock time and date at job start Thu Apr 9 2020 14:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46896 * 2 1 4 4 H 1.09002 * 109.46704 * 305.60058 * 3 2 1 5 5 C 1.50698 * 109.46892 * 185.60186 * 3 2 1 6 6 H 1.07997 * 119.99912 * 245.40178 * 5 3 2 7 7 C 1.37875 * 119.99763 * 65.40637 * 5 3 2 8 8 N 1.31521 * 119.99575 * 197.21157 * 7 5 3 9 9 Si 1.86800 * 120.00461 * 17.21042 * 7 5 3 10 10 H 1.48501 * 109.46811 * 86.81972 * 9 7 5 11 11 H 1.48504 * 109.46893 * 206.81938 * 9 7 5 12 12 H 1.48501 * 109.46845 * 326.81798 * 9 7 5 13 13 N 1.46893 * 109.47208 * 65.59768 * 3 2 1 14 14 C 1.46899 * 111.00637 * 251.61079 * 13 3 2 15 15 C 1.50702 * 109.47242 * 183.54587 * 14 13 3 16 16 C 1.38251 * 119.95403 * 259.99689 * 15 14 13 17 17 C 1.38200 * 120.17903 * 179.97438 * 16 15 14 18 18 C 1.38694 * 120.08789 * 0.02962 * 17 16 15 19 19 O 1.36001 * 120.04284 * 179.97438 * 18 17 16 20 20 C 1.38954 * 119.91331 * 359.97438 * 18 17 16 21 21 O 1.36092 * 120.09215 * 180.02562 * 20 18 17 22 22 C 1.38641 * 119.95270 * 79.72997 * 15 14 13 23 23 O 1.35995 * 120.05022 * 0.02562 * 22 15 14 24 24 H 1.08996 * 109.47706 * 305.16731 * 1 2 3 25 25 H 1.09003 * 109.47013 * 185.16492 * 1 2 3 26 26 H 1.09003 * 109.47256 * 65.16713 * 1 2 3 27 27 H 1.08998 * 109.46854 * 119.99297 * 2 1 3 28 28 H 1.09000 * 109.47248 * 240.00157 * 2 1 3 29 29 H 0.97001 * 119.99786 * 180.02562 * 8 7 5 30 30 H 1.00907 * 111.00354 * 15.57318 * 13 3 2 31 31 H 1.08996 * 109.46959 * 303.54833 * 14 13 3 32 32 H 1.09006 * 109.46519 * 63.54571 * 14 13 3 33 33 H 1.07998 * 119.90793 * 359.97438 * 16 15 14 34 34 H 1.08004 * 119.95962 * 180.02562 * 17 16 15 35 35 H 0.96701 * 113.99604 * 89.99872 * 19 18 17 36 36 H 0.96698 * 113.99996 * 90.00148 * 21 20 18 37 37 H 0.96703 * 113.99825 * 89.99963 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5970 1.9845 -0.8356 5 6 3.5405 1.4449 -0.1387 6 1 4.1571 1.8071 0.6706 7 6 4.1263 0.9845 -1.2989 8 7 5.4022 0.6657 -1.3096 9 14 3.1077 0.8136 -2.8554 10 1 3.1001 2.1063 -3.5863 11 1 3.6975 -0.2403 -3.7196 12 1 1.7160 0.4390 -2.4976 13 7 1.6637 2.0950 1.2612 14 6 0.6036 3.0885 1.0443 15 6 0.3058 3.7965 2.3409 16 6 -0.7902 3.4221 3.0959 17 6 -1.0674 4.0679 4.2859 18 6 -0.2466 5.0951 4.7272 19 8 -0.5205 5.7303 5.8981 20 6 0.8559 5.4745 3.9713 21 8 1.6640 6.4816 4.4011 22 6 1.1344 4.8186 2.7777 23 8 2.2151 5.1828 2.0368 24 1 -0.3634 0.5919 0.8400 25 1 -0.3633 -1.0235 0.0925 26 1 -0.3634 0.4316 -0.9327 27 1 1.8933 -0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 5.8144 0.3422 -2.1259 30 1 1.3852 1.4138 1.9517 31 1 0.9328 3.8146 0.3011 32 1 -0.2967 2.5873 0.6888 33 1 -1.4315 2.6229 2.7548 34 1 -1.9243 3.7723 4.8731 35 1 -0.1005 5.3286 6.6710 36 1 2.3966 6.1871 4.9592 37 1 2.0316 5.8760 1.3880 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234040729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:55:06 Heat of formation + Delta-G solvation = -97.945704 kcal Electronic energy + Delta-G solvation = -20538.814852 eV Core-core repulsion = 17282.030833 eV Total energy + Delta-G solvation = -3256.784019 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.45494 -37.94012 -37.14450 -36.35306 -35.62511 -32.57862 -31.61693 -29.35938 -29.19320 -27.18858 -24.41588 -22.67984 -22.46258 -21.27213 -19.91326 -19.04481 -18.02355 -17.32270 -16.75521 -16.53023 -15.55857 -15.19139 -14.90979 -14.74299 -14.06293 -13.85856 -13.71115 -13.07688 -12.95506 -12.80709 -12.49101 -12.01774 -11.87953 -11.75285 -11.57458 -11.20932 -10.87506 -10.82047 -10.64111 -10.41599 -9.99772 -9.92667 -9.53095 -9.31271 -8.58089 -8.47431 -8.33875 -7.30231 -6.02743 -3.92608 1.06682 1.12848 3.28994 3.35332 3.37677 3.39880 3.87693 4.10772 4.46019 4.53799 4.83722 5.00071 5.19276 5.22618 5.37197 5.56262 5.64719 5.75645 5.81673 5.85289 5.98579 6.07341 6.14070 6.18197 6.44656 6.48190 6.55721 6.60337 6.73449 6.86834 7.18397 7.29296 7.64631 7.80215 7.91957 7.96381 8.32865 8.76690 9.18409 9.64698 11.10961 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.027783 B = 0.005035 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.584746 B = 5559.924555 C = 6199.788640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.148 4.148 3 C 0.195 3.805 4 H 0.019 0.981 5 C -0.495 4.495 6 H 0.081 0.919 7 C 0.071 3.929 8 N -0.894 5.894 9 Si 0.857 3.143 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.258 1.258 13 N -0.658 5.658 14 C 0.103 3.897 15 C -0.092 4.092 16 C -0.095 4.095 17 C -0.143 4.143 18 C 0.084 3.916 19 O -0.490 6.490 20 C 0.047 3.953 21 O -0.484 6.484 22 C 0.128 3.872 23 O -0.468 6.468 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.261 0.739 30 H 0.325 0.675 31 H 0.077 0.923 32 H 0.030 0.970 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.385 0.615 36 H 0.387 0.613 37 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.153 6.008 10.323 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.188 4.188 3 C 0.086 3.914 4 H 0.037 0.963 5 C -0.533 4.533 6 H 0.099 0.901 7 C -0.130 4.130 8 N -0.532 5.532 9 Si 0.684 3.316 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.183 1.183 13 N -0.288 5.288 14 C -0.026 4.026 15 C -0.094 4.094 16 C -0.114 4.114 17 C -0.162 4.162 18 C 0.039 3.961 19 O -0.299 6.299 20 C 0.001 3.999 21 O -0.293 6.293 22 C 0.081 3.919 23 O -0.277 6.277 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.142 0.858 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.240 0.760 36 H 0.243 0.757 37 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -12.889 6.716 9.807 17.533 hybrid contribution -0.791 -0.943 -0.775 1.455 sum -13.680 5.772 9.032 17.380 Atomic orbital electron populations 1.21952 0.98622 1.00223 1.00517 1.22560 0.92574 1.01496 1.02131 1.19563 0.96830 0.88267 0.86711 0.96330 1.20989 0.89098 1.40973 1.02255 0.90097 1.24901 0.94708 0.94821 0.98583 1.69993 1.11923 1.43637 1.27667 0.87305 0.81762 0.77903 0.84582 1.20646 1.21586 1.18269 1.60610 1.38024 1.18355 1.11847 1.20850 0.93891 0.95632 0.92267 1.20422 0.93709 0.96998 0.98227 1.20890 0.97010 0.99503 0.93974 1.21259 1.00835 0.95917 0.98175 1.18596 0.95089 0.93850 0.88574 1.84898 1.74211 1.55646 1.15140 1.19211 0.92798 0.91967 0.95877 1.84850 1.42810 1.30651 1.71004 1.18517 0.87640 0.93879 0.91856 1.84951 1.30218 1.59749 1.52824 0.93650 0.93871 0.93686 0.92280 0.91954 0.92863 0.85761 0.90449 0.95248 0.85182 0.85085 0.75953 0.75750 0.75594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.45 37.16 0.35 -2.23 16 2 C -0.15 -3.06 4.56 -26.73 -0.12 -3.19 16 3 C 0.19 4.43 1.73 -68.87 -0.12 4.31 16 4 H 0.02 0.44 6.15 -51.93 -0.32 0.12 16 5 C -0.49 -13.85 9.25 -34.44 -0.32 -14.17 16 6 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 7 C 0.07 2.03 5.30 -17.82 -0.09 1.94 16 8 N -0.89 -27.31 13.96 55.43 0.77 -26.54 16 9 Si 0.86 20.93 25.86 -169.99 -4.40 16.54 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -5.87 5.65 56.52 0.32 -5.55 16 13 N -0.66 -13.04 6.02 -109.22 -0.66 -13.69 16 14 C 0.10 1.69 4.86 -4.98 -0.02 1.67 16 15 C -0.09 -1.35 5.44 -104.47 -0.57 -1.91 16 16 C -0.09 -1.16 9.66 -39.59 -0.38 -1.54 16 17 C -0.14 -1.63 9.98 -39.43 -0.39 -2.02 16 18 C 0.08 1.05 6.71 -39.15 -0.26 0.79 16 19 O -0.49 -5.35 13.29 -34.34 -0.46 -5.81 16 20 C 0.05 0.66 6.73 -39.03 -0.26 0.39 16 21 O -0.48 -6.30 13.07 -45.29 -0.59 -6.89 16 22 C 0.13 1.93 6.69 -39.15 -0.26 1.67 16 23 O -0.47 -7.53 12.52 -34.29 -0.43 -7.96 16 24 H 0.04 0.67 5.97 -51.93 -0.31 0.36 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 28 H 0.06 1.39 5.17 -51.93 -0.27 1.12 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.33 6.02 7.71 -39.29 -0.30 5.72 16 31 H 0.08 1.34 7.77 -51.93 -0.40 0.93 16 32 H 0.03 0.44 6.46 -51.93 -0.34 0.11 16 33 H 0.13 1.33 8.03 -52.49 -0.42 0.91 16 34 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 35 H 0.39 2.28 9.06 45.56 0.41 2.70 16 36 H 0.39 3.47 9.07 45.56 0.41 3.88 16 37 H 0.39 4.65 9.06 45.56 0.41 5.06 16 LS Contribution 308.17 15.07 4.64 4.64 Total: -1.00 -34.38 308.17 -6.02 -40.40 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -2.45 Total: 13.60 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -2.46 Total: -14.29 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.12 Total: -40.23 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -1.48 Total: -20.65 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.40 Total: 16.54 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.38 -6.02 -40.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234040729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.544 kcal (2) G-P(sol) polarization free energy of solvation -34.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds