Wall clock time and date at job start Thu Apr 9 2020 14:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46896 * 2 1 4 4 H 1.09002 * 109.46704 * 305.60058 * 3 2 1 5 5 C 1.50698 * 109.46892 * 185.60186 * 3 2 1 6 6 H 1.07997 * 119.99912 * 245.40178 * 5 3 2 7 7 C 1.37875 * 119.99763 * 65.40637 * 5 3 2 8 8 N 1.31521 * 119.99575 * 197.21157 * 7 5 3 9 9 Si 1.86800 * 120.00461 * 17.21042 * 7 5 3 10 10 H 1.48501 * 109.46811 * 86.81972 * 9 7 5 11 11 H 1.48504 * 109.46893 * 206.81938 * 9 7 5 12 12 H 1.48501 * 109.46845 * 326.81798 * 9 7 5 13 13 N 1.46893 * 109.47208 * 65.59768 * 3 2 1 14 14 C 1.46899 * 111.00637 * 251.61079 * 13 3 2 15 15 C 1.50702 * 109.47242 * 183.54587 * 14 13 3 16 16 C 1.38251 * 119.95403 * 259.99689 * 15 14 13 17 17 C 1.38200 * 120.17903 * 179.97438 * 16 15 14 18 18 C 1.38694 * 120.08789 * 0.02962 * 17 16 15 19 19 O 1.36001 * 120.04284 * 179.97438 * 18 17 16 20 20 C 1.38954 * 119.91331 * 359.97438 * 18 17 16 21 21 O 1.36092 * 120.09215 * 180.02562 * 20 18 17 22 22 C 1.38641 * 119.95270 * 79.72997 * 15 14 13 23 23 O 1.35995 * 120.05022 * 0.02562 * 22 15 14 24 24 H 1.08996 * 109.47706 * 305.16731 * 1 2 3 25 25 H 1.09003 * 109.47013 * 185.16492 * 1 2 3 26 26 H 1.09003 * 109.47256 * 65.16713 * 1 2 3 27 27 H 1.08998 * 109.46854 * 119.99297 * 2 1 3 28 28 H 1.09000 * 109.47248 * 240.00157 * 2 1 3 29 29 H 0.97001 * 119.99786 * 180.02562 * 8 7 5 30 30 H 1.00907 * 111.00354 * 15.57318 * 13 3 2 31 31 H 1.08996 * 109.46959 * 303.54833 * 14 13 3 32 32 H 1.09006 * 109.46519 * 63.54571 * 14 13 3 33 33 H 1.07998 * 119.90793 * 359.97438 * 16 15 14 34 34 H 1.08004 * 119.95962 * 180.02562 * 17 16 15 35 35 H 0.96701 * 113.99604 * 89.99872 * 19 18 17 36 36 H 0.96698 * 113.99996 * 90.00148 * 21 20 18 37 37 H 0.96703 * 113.99825 * 89.99963 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5970 1.9845 -0.8356 5 6 3.5405 1.4449 -0.1387 6 1 4.1571 1.8071 0.6706 7 6 4.1263 0.9845 -1.2989 8 7 5.4022 0.6657 -1.3096 9 14 3.1077 0.8136 -2.8554 10 1 3.1001 2.1063 -3.5863 11 1 3.6975 -0.2403 -3.7196 12 1 1.7160 0.4390 -2.4976 13 7 1.6637 2.0950 1.2612 14 6 0.6036 3.0885 1.0443 15 6 0.3058 3.7965 2.3409 16 6 -0.7902 3.4221 3.0959 17 6 -1.0674 4.0679 4.2859 18 6 -0.2466 5.0951 4.7272 19 8 -0.5205 5.7303 5.8981 20 6 0.8559 5.4745 3.9713 21 8 1.6640 6.4816 4.4011 22 6 1.1344 4.8186 2.7777 23 8 2.2151 5.1828 2.0368 24 1 -0.3634 0.5919 0.8400 25 1 -0.3633 -1.0235 0.0925 26 1 -0.3634 0.4316 -0.9327 27 1 1.8933 -0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 5.8144 0.3422 -2.1259 30 1 1.3852 1.4138 1.9517 31 1 0.9328 3.8146 0.3011 32 1 -0.2967 2.5873 0.6888 33 1 -1.4315 2.6229 2.7548 34 1 -1.9243 3.7723 4.8731 35 1 -0.1005 5.3286 6.6710 36 1 2.3966 6.1871 4.9592 37 1 2.0316 5.8760 1.3880 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234040729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:55:06 Heat of formation + Delta-G solvation = -128.659925 kcal Electronic energy + Delta-G solvation = -20540.146721 eV Core-core repulsion = 17282.030833 eV Total energy + Delta-G solvation = -3258.115887 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.45083 -39.03352 -38.37492 -37.59874 -36.69194 -34.47803 -33.17806 -30.64470 -30.19027 -28.88641 -25.81318 -24.07695 -23.66856 -22.39376 -21.65343 -20.02071 -19.10103 -18.77181 -18.27297 -17.65545 -16.81174 -16.55628 -16.25735 -15.96596 -15.70800 -15.02291 -14.80464 -14.74673 -14.32896 -13.97206 -13.82075 -13.57508 -13.37025 -12.91840 -12.84744 -12.61015 -12.41696 -12.27205 -12.14673 -11.78626 -11.61688 -11.35161 -11.33130 -10.97723 -10.50185 -9.55838 -9.49041 -8.85921 -8.23681 -6.18198 0.09674 0.15598 1.35234 1.38560 1.47123 2.38899 2.39818 2.96062 3.08971 3.22156 3.55085 3.65562 3.97355 4.03515 4.31670 4.33882 4.39867 4.51635 4.53670 4.62668 4.80600 4.86213 4.92256 5.10847 5.16854 5.20226 5.23429 5.28506 5.49529 5.55327 5.66383 5.79271 6.11182 6.54405 6.74227 6.80809 6.87565 6.88866 6.97090 7.43822 8.94393 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.027783 B = 0.005035 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.584746 B = 5559.924555 C = 6199.788640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.202 3.798 4 H 0.019 0.981 5 C -0.501 4.501 6 H 0.025 0.975 7 C 0.012 3.988 8 N -0.948 5.948 9 Si 0.927 3.073 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.226 1.226 13 N -0.675 5.675 14 C 0.109 3.891 15 C -0.109 4.109 16 C -0.086 4.086 17 C -0.136 4.136 18 C 0.089 3.911 19 O -0.497 6.497 20 C 0.032 3.968 21 O -0.496 6.496 22 C 0.106 3.894 23 O -0.495 6.495 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.262 0.738 30 H 0.333 0.667 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.408 0.592 36 H 0.401 0.599 37 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.842 5.571 10.764 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.092 3.908 4 H 0.037 0.963 5 C -0.540 4.540 6 H 0.044 0.956 7 C -0.185 4.185 8 N -0.589 5.589 9 Si 0.751 3.249 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.149 1.149 13 N -0.306 5.306 14 C -0.020 4.020 15 C -0.111 4.111 16 C -0.104 4.104 17 C -0.154 4.154 18 C 0.044 3.956 19 O -0.310 6.310 20 C -0.013 4.013 21 O -0.308 6.308 22 C 0.059 3.941 23 O -0.306 6.306 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.151 0.849 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.174 0.826 34 H 0.179 0.821 35 H 0.267 0.733 36 H 0.259 0.741 37 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -16.603 6.285 10.291 20.520 hybrid contribution 0.420 -0.715 -0.709 1.091 sum -16.183 5.571 9.583 19.615 Atomic orbital electron populations 1.21856 0.94684 1.02229 1.01618 1.22394 0.96022 0.99108 1.01034 1.19317 0.93161 0.90142 0.88141 0.96274 1.21297 0.92015 1.39971 1.00695 0.95638 1.25773 0.95857 0.94585 1.02255 1.70156 1.14348 1.45723 1.28665 0.86170 0.81512 0.77761 0.79408 1.20439 1.21651 1.14878 1.60349 1.40622 1.18877 1.10738 1.20774 0.93441 0.94506 0.93281 1.20321 0.95152 0.97393 0.98198 1.21146 0.96030 0.99676 0.93575 1.21556 1.01092 0.94874 0.97869 1.18706 0.94359 0.93630 0.88921 1.84836 1.74452 1.56158 1.15550 1.19341 0.93730 0.92362 0.95905 1.84800 1.43512 1.31009 1.71437 1.18785 0.87851 0.94923 0.92498 1.84904 1.31647 1.60496 1.53540 0.91735 0.91617 0.93241 0.92911 0.93730 0.92882 0.84878 0.92090 0.92889 0.82554 0.82065 0.73294 0.74119 0.74396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 9.45 71.98 0.68 -3.55 16 2 C -0.15 -5.77 4.56 30.60 0.14 -5.63 16 3 C 0.20 9.07 1.73 44.17 0.08 9.14 16 4 H 0.02 0.87 6.15 -2.39 -0.01 0.86 16 5 C -0.50 -29.10 9.25 25.60 0.24 -28.86 16 6 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 7 C 0.01 0.70 5.30 84.65 0.45 1.15 16 8 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 9 Si 0.93 43.52 25.86 68.60 1.77 45.29 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.23 -9.36 5.65 99.48 0.56 -8.80 16 13 N -0.68 -26.40 6.02 -499.46 -3.01 -29.41 16 14 C 0.11 3.41 4.86 85.56 0.42 3.82 16 15 C -0.11 -3.02 5.44 -19.76 -0.11 -3.12 16 16 C -0.09 -1.79 9.66 22.26 0.22 -1.57 16 17 C -0.14 -2.57 9.98 22.37 0.22 -2.35 16 18 C 0.09 2.01 6.71 22.55 0.15 2.16 16 19 O -0.50 -9.47 13.29 -79.61 -1.06 -10.52 16 20 C 0.03 0.87 6.73 22.63 0.15 1.02 16 21 O -0.50 -12.74 13.07 -70.45 -0.92 -13.67 16 22 C 0.11 3.17 6.69 22.55 0.15 3.32 16 23 O -0.49 -16.54 12.52 -79.56 -1.00 -17.54 16 24 H 0.06 1.61 5.97 -2.39 -0.01 1.60 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 2.11 8.06 -2.39 -0.02 2.09 16 28 H 0.04 1.89 5.17 -2.39 -0.01 1.88 16 29 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.33 11.93 7.71 -89.69 -0.69 11.23 16 31 H 0.06 2.09 7.77 -2.39 -0.02 2.07 16 32 H 0.05 1.41 6.46 -2.38 -0.02 1.40 16 33 H 0.16 2.40 8.03 -2.91 -0.02 2.38 16 34 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.41 3.63 9.06 -74.06 -0.67 2.96 16 36 H 0.40 7.14 9.07 -74.06 -0.67 6.47 16 37 H 0.40 10.20 9.06 -74.06 -0.67 9.53 16 Total: -1.00 -77.33 308.17 -2.83 -80.16 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: -1.70 Total: 30.22 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 2.78 Total: -24.47 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -2.71 Total: -89.48 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -2.97 Total: -41.73 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.77 Total: 45.29 kcal Total: -77.33 -2.83 -80.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234040729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.503 kcal (2) G-P(sol) polarization free energy of solvation -77.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds