Wall clock time and date at job start Thu Apr 9 2020 14:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 119.99935 * 2 1 4 4 H 1.48501 * 109.47104 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47230 * 120.00067 * 3 2 1 6 6 H 1.48500 * 109.47047 * 240.00127 * 3 2 1 7 7 C 1.37872 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00291 * 7.96280 * 7 2 1 9 9 C 1.50705 * 120.00131 * 187.95858 * 7 2 1 10 10 C 1.53001 * 115.55000 * 269.42874 * 9 7 2 11 11 C 1.52994 * 109.47078 * 307.71968 * 10 9 7 12 12 C 1.50705 * 109.73464 * 63.55332 * 11 10 9 13 13 O 1.20819 * 120.00050 * 21.82271 * 12 11 10 14 14 O 1.34232 * 120.00039 * 201.83314 * 12 11 10 15 15 C 1.53365 * 109.73855 * 184.20829 * 11 10 9 16 16 O 1.42903 * 109.27027 * 171.85630 * 15 11 10 17 17 C 1.42887 * 114.54432 * 295.14032 * 16 15 11 18 18 C 1.53362 * 109.27993 * 64.91255 * 17 16 15 19 19 C 1.51511 * 109.73645 * 302.89676 * 11 10 9 20 20 O 1.20761 * 121.21868 * 11.91068 * 19 11 10 21 21 C 1.52995 * 117.49813 * 123.75341 * 9 7 2 22 22 C 1.53001 * 117.49243 * 55.09500 * 9 7 2 23 23 H 0.96997 * 119.99479 * 174.97144 * 1 2 3 24 24 H 1.09001 * 109.47111 * 67.71918 * 10 9 7 25 25 H 1.08997 * 109.46420 * 187.72014 * 10 9 7 26 26 H 0.96691 * 116.99715 * 179.97438 * 14 12 11 27 27 H 1.09003 * 109.49882 * 291.85119 * 15 11 10 28 28 H 1.08997 * 109.50022 * 51.96146 * 15 11 10 29 29 H 1.08997 * 109.50739 * 304.97032 * 17 16 15 30 30 H 1.08996 * 109.53967 * 184.87254 * 17 16 15 31 31 H 1.09001 * 109.74177 * 188.09381 * 18 17 16 32 32 H 1.09002 * 109.77920 * 67.41525 * 18 17 16 33 33 H 1.09010 * 117.50117 * 0.02562 * 21 9 7 34 34 H 1.08999 * 117.49949 * 145.02093 * 21 9 7 35 35 H 1.08997 * 117.49420 * 214.97609 * 22 9 7 36 36 H 1.08994 * 117.50075 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.4724 -2.1249 -0.1286 9 6 3.5007 -1.2003 0.1812 10 6 4.3214 -1.1218 -1.1076 11 6 3.8536 -2.2089 -2.0771 12 6 2.4200 -1.9587 -2.4690 13 8 1.9493 -0.8510 -2.3630 14 8 1.6660 -2.9665 -2.9355 15 6 4.7408 -2.2041 -3.3281 16 8 4.4206 -3.3373 -4.1377 17 6 4.7145 -4.5992 -3.5353 18 6 3.8244 -4.7907 -2.3011 19 6 3.9742 -3.5681 -1.4186 20 8 4.1826 -3.6733 -0.2338 21 6 4.0699 -2.0330 1.3316 22 6 4.0653 -0.5050 1.4217 23 1 -0.4849 -0.8368 -0.0736 24 1 4.1847 -0.1425 -1.5664 25 1 5.3761 -1.2706 -0.8763 26 1 0.7525 -2.7575 -3.1735 27 1 4.5656 -1.2897 -3.8949 28 1 5.7884 -2.2539 -3.0313 29 1 5.7622 -4.6244 -3.2357 30 1 4.5213 -5.3985 -4.2507 31 1 4.1389 -5.6799 -1.7547 32 1 2.7843 -4.8969 -2.6094 33 1 3.3622 -2.5768 1.9575 34 1 5.0292 -2.5248 1.1704 35 1 5.0216 0.0079 1.3197 36 1 3.3546 -0.0427 2.1068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709497708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:55:55 Heat of formation + Delta-G solvation = -119.455772 kcal Electronic energy + Delta-G solvation = -22881.992199 eV Core-core repulsion = 19526.556771 eV Total energy + Delta-G solvation = -3355.435427 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.82114 -38.56759 -37.73413 -36.57513 -35.05826 -32.77451 -31.89185 -31.41895 -26.82967 -24.82975 -24.32226 -23.44111 -21.50384 -21.46210 -19.22854 -18.43518 -17.20377 -16.82328 -16.33280 -16.29847 -15.86394 -15.39502 -14.48220 -14.16714 -14.02381 -13.90874 -13.62415 -13.12568 -12.86158 -12.61686 -12.29719 -12.00561 -11.83524 -11.69518 -11.49265 -10.83834 -10.65526 -10.44658 -10.35935 -10.13158 -9.96492 -9.75662 -9.54637 -9.17903 -8.94426 -8.35961 -8.19273 -8.02971 -6.25611 -3.88659 2.24066 3.29982 3.57561 3.61242 3.69725 3.76647 3.80906 4.26335 4.70898 4.74574 4.87242 5.04647 5.07373 5.16418 5.30413 5.48386 5.54651 5.56188 5.76041 5.83697 5.98296 6.12173 6.21925 6.34191 6.41690 6.49207 6.73014 6.77467 7.02806 7.06995 7.34042 7.39500 7.43773 7.92445 8.28120 8.44424 8.90087 9.00793 9.79385 11.13943 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.023958 B = 0.009938 C = 0.008785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.418598 B = 2816.697701 C = 3186.434599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.062 3.938 3 Si 1.053 2.947 4 H -0.298 1.298 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.556 4.556 8 H 0.047 0.953 9 C -0.003 4.003 10 C -0.069 4.069 11 C -0.106 4.106 12 C 0.496 3.504 13 O -0.436 6.436 14 O -0.529 6.529 15 C 0.075 3.925 16 O -0.370 6.370 17 C 0.070 3.930 18 C -0.205 4.205 19 C 0.366 3.634 20 O -0.407 6.407 21 C -0.141 4.141 22 C -0.209 4.209 23 H 0.260 0.740 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.400 0.600 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.236 -7.689 -7.944 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.143 4.143 3 Si 0.883 3.117 4 H -0.225 1.225 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.593 4.593 8 H 0.065 0.935 9 C -0.004 4.004 10 C -0.107 4.107 11 C -0.109 4.109 12 C 0.334 3.666 13 O -0.317 6.317 14 O -0.342 6.342 15 C -0.002 4.002 16 O -0.288 6.288 17 C -0.007 4.007 18 C -0.243 4.243 19 C 0.237 3.763 20 O -0.276 6.276 21 C -0.178 4.178 22 C -0.246 4.246 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.258 0.742 27 H 0.127 0.873 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.339 -5.828 -7.263 13.915 hybrid contribution -0.460 -1.617 0.082 1.683 sum 9.879 -7.445 -7.181 14.304 Atomic orbital electron populations 1.70872 1.07063 1.30033 1.46630 1.25497 0.95704 1.01987 0.91116 0.83931 0.75158 0.75547 0.77039 1.22458 1.20366 1.20833 1.21137 0.88450 0.94392 1.55274 0.93491 1.19288 0.95320 1.00620 0.85140 1.21203 0.97353 0.96054 0.96064 1.21677 0.92478 0.98451 0.98247 1.21451 0.86871 0.82862 0.75440 1.90800 1.71589 1.24895 1.44377 1.84402 1.28502 1.43162 1.78116 1.22778 0.96921 0.90327 0.90163 1.87935 1.85623 1.13485 1.41768 1.22569 0.97117 0.86600 0.94384 1.23087 1.04796 0.98240 0.98155 1.24405 0.71954 0.90704 0.89211 1.90535 1.32857 1.88071 1.16107 1.22689 1.00662 0.90823 1.03602 1.23222 1.00655 0.96089 1.04640 0.92992 0.90567 0.92766 0.74222 0.87341 0.91445 0.92965 0.87938 0.88994 0.86353 0.90910 0.90701 0.91596 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.61 13.70 55.43 0.76 -27.85 16 2 C 0.06 1.82 3.97 -17.82 -0.07 1.75 16 3 Si 1.05 27.14 25.37 -169.99 -4.31 22.83 16 4 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 5 H -0.28 -6.63 5.57 56.52 0.31 -6.31 16 6 H -0.28 -6.92 6.46 56.52 0.37 -6.55 16 7 C -0.56 -15.48 5.58 -34.44 -0.19 -15.67 16 8 H 0.05 1.45 7.62 -52.48 -0.40 1.05 16 9 C 0.00 -0.06 0.30 -155.66 -0.05 -0.11 16 10 C -0.07 -1.41 3.90 -26.73 -0.10 -1.52 16 11 C -0.11 -1.95 0.53 -156.23 -0.08 -2.03 16 12 C 0.50 10.33 4.81 36.01 0.17 10.50 16 13 O -0.44 -10.83 12.57 -18.74 -0.24 -11.07 16 14 O -0.53 -9.35 11.00 -39.26 -0.43 -9.78 16 15 C 0.08 1.07 5.52 37.35 0.21 1.28 16 16 O -0.37 -5.08 10.46 -35.23 -0.37 -5.45 16 17 C 0.07 0.78 6.85 37.34 0.26 1.04 16 18 C -0.20 -2.76 5.97 -27.29 -0.16 -2.92 16 19 C 0.37 6.50 5.67 -28.23 -0.16 6.34 16 20 O -0.41 -8.29 11.79 6.00 0.07 -8.22 16 21 C -0.14 -3.18 7.12 -26.70 -0.19 -3.37 16 22 C -0.21 -4.77 7.33 -26.69 -0.20 -4.96 16 23 H 0.26 8.17 8.72 -40.82 -0.36 7.81 16 24 H 0.08 1.63 6.31 -51.93 -0.33 1.30 16 25 H 0.05 0.97 8.07 -51.93 -0.42 0.55 16 26 H 0.40 5.95 9.10 45.56 0.41 6.36 16 27 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 28 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 29 H 0.05 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.12 1.66 6.55 -51.93 -0.34 1.32 16 33 H 0.07 1.75 8.14 -51.92 -0.42 1.33 16 34 H 0.07 1.57 6.84 -51.93 -0.36 1.22 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.08 2.07 6.87 -51.93 -0.36 1.71 16 LS Contribution 278.61 15.07 4.20 4.20 Total: -1.00 -34.22 278.61 -4.91 -39.13 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -4.02 Total: 5.88 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -0.57 Total: -9.66 kcal Atomic # 7 Polarization: -28.61 SS G_CDS: 0.76 Total: -27.85 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.97 Total: -34.51 kcal Atomic # 14 Polarization: 27.14 SS G_CDS: -4.31 Total: 22.83 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -34.22 -4.91 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709497708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.331 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds