Wall clock time and date at job start Thu Apr 9 2020 14:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47178 * 2 1 4 4 N 1.46502 * 109.46727 * 119.99373 * 2 1 3 5 5 C 1.46498 * 120.00389 * 296.17287 * 4 2 1 6 6 C 1.50703 * 109.47104 * 269.99835 * 5 4 2 7 7 H 1.08004 * 119.99827 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00330 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99910 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00305 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47078 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47456 * 119.99851 * 10 8 6 13 13 H 1.48496 * 109.47134 * 240.00286 * 10 8 6 14 14 C 1.34778 * 119.99951 * 116.16843 * 4 2 1 15 15 O 1.21283 * 120.00145 * 185.37542 * 14 4 2 16 16 C 1.50699 * 120.00157 * 5.38059 * 14 4 2 17 17 C 1.52998 * 109.47308 * 185.54309 * 16 14 4 18 18 H 1.08995 * 110.54037 * 307.60804 * 17 16 14 19 19 C 1.54628 * 110.48341 * 184.99854 * 17 16 14 20 20 C 1.54479 * 101.76145 * 216.52052 * 19 17 16 21 21 N 1.46757 * 105.47502 * 25.42037 * 20 19 17 22 22 C 1.34419 * 111.30148 * 342.98083 * 21 20 19 23 23 O 1.21282 * 124.94314 * 180.37774 * 22 21 20 24 24 H 1.08993 * 109.47323 * 305.79127 * 1 2 3 25 25 H 1.09009 * 109.46523 * 65.78841 * 1 2 3 26 26 H 1.08999 * 109.47376 * 185.78473 * 1 2 3 27 27 H 1.08995 * 109.47360 * 239.99069 * 2 1 3 28 28 H 1.09003 * 109.47141 * 174.58729 * 3 2 1 29 29 H 1.09000 * 109.46941 * 294.57899 * 3 2 1 30 30 H 1.08994 * 109.47247 * 54.58468 * 3 2 1 31 31 H 1.09004 * 109.47235 * 29.99739 * 5 4 2 32 32 H 1.09000 * 109.47244 * 149.99815 * 5 4 2 33 33 H 0.96999 * 120.00396 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47062 * 65.53519 * 16 14 4 35 35 H 1.09007 * 109.46992 * 305.54024 * 16 14 4 36 36 H 1.08997 * 110.97288 * 98.40782 * 19 17 16 37 37 H 1.09001 * 110.97439 * 334.63766 * 19 17 16 38 38 H 1.09005 * 110.24426 * 144.41778 * 20 19 17 39 39 H 1.08996 * 110.25177 * 266.41448 * 20 19 17 40 40 H 0.97002 * 124.35534 * 163.00501 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 1.7348 -0.1429 2.5252 6 6 2.8399 0.8001 2.9261 7 1 3.6705 0.9737 2.2580 8 6 2.7906 1.4411 4.1458 9 7 1.7794 1.2293 4.9596 10 14 4.1600 2.6104 4.6424 11 1 5.1730 2.6752 3.5585 12 1 3.5954 3.9645 4.8731 13 1 4.7999 2.1218 5.8901 14 6 2.7282 -1.8296 1.0743 15 8 3.0487 -2.4534 2.0638 16 6 3.1237 -2.3284 -0.2917 17 6 3.7948 -3.6970 -0.1603 18 1 4.6055 -3.6572 0.5672 19 6 4.3225 -4.1749 -1.5330 20 6 4.0556 -5.6948 -1.4611 21 7 2.9462 -5.8532 -0.5135 22 6 2.7808 -4.7483 0.2338 23 8 1.9406 -4.6134 1.0980 24 1 -0.3633 0.6010 0.8335 25 1 -0.3633 0.4215 -0.9374 26 1 -0.3634 -1.0224 0.1036 27 1 1.8934 -0.5139 -0.8898 28 1 3.1257 1.4440 0.0969 29 1 1.7581 1.9275 -0.9346 30 1 1.5997 1.9835 0.8375 31 1 0.7878 0.3963 2.5016 32 1 1.6716 -0.9567 3.2476 33 1 1.7445 1.6805 5.8175 34 1 3.8199 -1.6245 -0.7479 35 1 2.2354 -2.4178 -0.9171 36 1 5.3883 -3.9705 -1.6339 37 1 3.7603 -3.7183 -2.3476 38 1 3.7706 -6.0745 -2.4423 39 1 4.9405 -6.2164 -1.0965 40 1 2.4024 -6.6527 -0.4361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900469708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:56:18 Heat of formation + Delta-G solvation = -76.356302 kcal Electronic energy + Delta-G solvation = -21539.719920 eV Core-core repulsion = 18354.279272 eV Total energy + Delta-G solvation = -3185.440648 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41064 -38.71219 -36.15580 -35.78063 -33.01684 -32.49825 -30.67819 -29.14547 -27.39010 -26.61478 -25.35493 -22.63092 -21.92836 -21.15276 -19.77869 -17.82823 -17.25609 -16.68022 -16.32692 -16.23680 -15.16721 -14.64778 -14.39044 -14.12681 -13.59825 -13.49374 -13.38670 -13.14280 -12.72301 -12.47588 -12.36280 -12.17779 -11.66140 -11.61837 -11.55355 -11.26256 -11.09507 -10.94504 -10.81011 -10.72497 -10.44842 -10.27521 -9.91688 -9.48087 -9.39056 -9.06440 -8.64622 -8.33362 -7.44142 -5.93678 -3.97064 2.87639 3.34277 3.40156 3.41808 3.44855 3.68543 4.02438 4.37453 4.45718 4.52109 4.67964 4.97628 5.20936 5.28607 5.34215 5.39038 5.43150 5.50413 5.65698 5.67904 5.70035 5.76746 5.86498 6.06730 6.13514 6.26649 6.36283 6.46530 6.71132 6.90727 7.02552 7.08583 7.27525 7.65236 7.75865 8.04774 8.37670 8.49258 8.65066 9.03967 9.33214 9.67149 11.14377 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022797 B = 0.005445 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.951202 B = 5140.712459 C = 5497.585449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 C -0.153 4.153 4 N -0.597 5.597 5 C 0.247 3.753 6 C -0.516 4.516 7 H 0.057 0.943 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.508 3.492 15 O -0.525 6.525 16 C -0.125 4.125 17 C -0.108 4.108 18 H 0.118 0.882 19 C -0.131 4.131 20 C 0.104 3.896 21 N -0.745 5.745 22 C 0.518 3.482 23 O -0.498 6.498 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.261 0.739 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 -8.782 -18.371 20.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.030 3.970 3 C -0.211 4.211 4 N -0.330 5.330 5 C 0.128 3.872 6 C -0.555 4.555 7 H 0.076 0.924 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.293 3.707 15 O -0.400 6.400 16 C -0.166 4.166 17 C -0.130 4.130 18 H 0.135 0.865 19 C -0.169 4.169 20 C -0.021 4.021 21 N -0.403 5.403 22 C 0.303 3.697 23 O -0.369 6.369 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 2.994 -8.858 -17.165 19.546 hybrid contribution 0.542 0.357 0.285 0.709 sum 3.536 -8.501 -16.880 19.227 Atomic orbital electron populations 1.22173 0.95945 1.02045 1.01837 1.20954 0.93870 0.94100 0.88124 1.22104 1.01966 0.95663 1.01328 1.48232 1.52988 1.23378 1.08435 1.19176 0.96077 0.94225 0.77703 1.21504 1.07106 1.24793 1.02065 0.92437 1.24935 0.95914 0.97157 0.96280 1.69953 1.30419 1.43300 1.09813 0.86512 0.82217 0.80519 0.78558 1.19889 1.21123 1.21043 1.20048 0.79337 0.81023 0.90249 1.90680 1.54221 1.55728 1.39418 1.21594 1.01403 0.95611 0.97967 1.21737 0.99071 0.94017 0.98193 0.86450 1.22718 1.02828 0.94377 0.97007 1.21975 0.89859 0.97064 0.93159 1.46260 1.36020 1.17942 1.40088 1.20805 0.84594 0.83678 0.80600 1.90842 1.35816 1.80142 1.30142 0.91576 0.92523 0.92870 0.90985 0.92363 0.93535 0.90623 0.95171 0.93990 0.92953 0.88526 0.89760 0.89097 0.89871 0.90631 0.91366 0.75635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.13 37.16 0.34 -2.22 16 2 C 0.13 2.29 3.14 -67.93 -0.21 2.08 16 3 C -0.15 -2.58 8.25 37.16 0.31 -2.27 16 4 N -0.60 -13.22 2.39 -167.47 -0.40 -13.62 16 5 C 0.25 6.72 4.57 -5.19 -0.02 6.69 16 6 C -0.52 -14.68 7.99 -34.44 -0.28 -14.96 16 7 H 0.06 1.62 7.31 -52.48 -0.38 1.24 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 10 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 14 C 0.51 11.13 6.99 -10.99 -0.08 11.05 16 15 O -0.52 -14.00 13.90 -14.21 -0.20 -14.20 16 16 C -0.12 -1.88 3.50 -27.88 -0.10 -1.98 16 17 C -0.11 -1.48 2.54 -90.63 -0.23 -1.71 16 18 H 0.12 1.78 7.81 -51.93 -0.41 1.37 16 19 C -0.13 -1.05 6.70 -25.10 -0.17 -1.22 16 20 C 0.10 0.76 7.78 -3.13 -0.02 0.74 16 21 N -0.74 -8.22 6.24 -59.21 -0.37 -8.59 16 22 C 0.52 8.37 7.71 -10.86 -0.08 8.28 16 23 O -0.50 -10.92 15.85 -14.21 -0.23 -11.15 16 24 H 0.07 1.17 7.04 -51.93 -0.37 0.80 16 25 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.00 5.75 -51.93 -0.30 0.70 16 28 H 0.06 1.03 7.72 -51.93 -0.40 0.63 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.49 7.34 -51.93 -0.38 1.11 16 31 H 0.03 0.83 6.75 -51.93 -0.35 0.48 16 32 H 0.04 1.33 7.35 -51.93 -0.38 0.94 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.10 1.20 8.11 -51.93 -0.42 0.78 16 35 H 0.08 1.13 7.30 -51.92 -0.38 0.75 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.56 7.91 -51.93 -0.41 0.15 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.41 3.83 8.96 -40.82 -0.37 3.47 16 LS Contribution 322.83 15.07 4.86 4.86 Total: -1.00 -37.39 322.83 -7.47 -44.86 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.22 Total: 1.17 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -0.64 Total: 6.09 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.03 Total: -48.79 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.42 Total: -25.34 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -37.39 -7.47 -44.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900469708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.497 kcal (2) G-P(sol) polarization free energy of solvation -37.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds