Wall clock time and date at job start Thu Apr 9 2020 14:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34770 * 120.00198 * 2 1 4 4 O 1.21280 * 120.00416 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00046 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.00028 * 40.35753 * 5 3 2 7 7 C 1.54327 * 109.88286 * 279.25840 * 5 3 2 8 8 C 1.55155 * 102.94571 * 218.38953 * 7 5 3 9 9 C 1.54912 * 101.57968 * 35.50272 * 8 7 5 10 10 N 1.47024 * 109.88340 * 161.45347 * 5 3 2 11 11 C 1.34780 * 125.64847 * 298.62314 * 10 5 3 12 12 O 1.21441 * 119.99413 * 359.70939 * 11 10 5 13 13 C 1.48826 * 120.00322 * 179.71762 * 11 10 5 14 14 O 1.21500 * 120.00027 * 359.97438 * 13 11 10 15 15 N 1.34771 * 120.00079 * 179.97438 * 13 11 10 16 16 C 1.36126 * 119.99921 * 179.97438 * 15 13 11 17 17 H 1.07991 * 120.00048 * 359.97438 * 16 15 13 18 18 C 1.39590 * 119.99669 * 179.97438 * 16 15 13 19 19 N 1.31015 * 120.00063 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99713 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47130 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46842 * 119.99834 * 20 18 16 23 23 H 1.48491 * 109.47261 * 240.00291 * 20 18 16 24 24 H 1.08993 * 109.47314 * 59.99955 * 1 2 3 25 25 H 1.09004 * 109.47113 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46774 * 300.00076 * 1 2 3 27 27 H 0.97003 * 120.00049 * 180.02562 * 2 1 3 28 28 H 1.08999 * 110.71564 * 100.02707 * 7 5 3 29 29 H 1.08996 * 110.72159 * 336.75746 * 7 5 3 30 30 H 1.08997 * 111.00368 * 277.43464 * 8 7 5 31 31 H 1.08992 * 111.03872 * 153.58929 * 8 7 5 32 32 H 1.09002 * 110.36496 * 204.15483 * 9 8 7 33 33 H 1.08995 * 110.46379 * 81.87851 * 9 8 7 34 34 H 0.97001 * 120.00431 * 359.97438 * 15 13 11 35 35 H 0.97004 * 119.99240 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 1 4.0184 0.3867 -0.6642 7 6 4.1713 0.9333 1.4315 8 6 5.4041 1.8723 1.5071 9 6 4.9307 3.0762 0.6549 10 7 4.1458 2.4780 -0.4403 11 6 3.9191 3.0419 -1.6432 12 8 3.2544 2.4553 -2.4732 13 6 4.4834 4.3834 -1.9544 14 8 5.1481 4.9705 -1.1239 15 7 4.2571 4.9471 -3.1575 16 6 4.7729 6.1743 -3.4419 17 1 5.3630 6.6964 -2.7034 18 6 4.5389 6.7579 -4.6883 19 7 3.8226 6.1247 -5.5840 20 14 5.2461 8.4423 -5.0783 21 1 6.0109 8.9414 -3.9073 22 1 6.1500 8.3399 -6.2521 23 1 4.1402 9.3843 -5.3858 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9500 -0.8401 -0.0004 28 1 4.4694 -0.1063 1.5679 29 1 3.4218 1.2206 2.1690 30 1 6.2817 1.4013 1.0643 31 1 5.6027 2.1753 2.5351 32 1 5.7877 3.6183 0.2552 33 1 4.3056 3.7419 1.2500 34 1 3.7268 4.4783 -3.8208 35 1 3.6598 6.5304 -6.4499 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042396607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:58:47 Heat of formation + Delta-G solvation = -95.253934 kcal Electronic energy + Delta-G solvation = -21036.842875 eV Core-core repulsion = 17649.323759 eV Total energy + Delta-G solvation = -3387.519117 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -40.46943 -38.88479 -37.39564 -36.61528 -34.51977 -34.19741 -31.59045 -31.07617 -29.87333 -26.54242 -25.95768 -24.11536 -22.01509 -21.53108 -20.31086 -19.00251 -18.16813 -17.48461 -16.52397 -16.33187 -15.50487 -15.24726 -15.03742 -14.70888 -14.39262 -13.96262 -13.68076 -13.31443 -13.08768 -12.89226 -12.70582 -12.47895 -12.32139 -12.07407 -11.75339 -11.59446 -11.19703 -11.15902 -10.89051 -10.42613 -10.36957 -10.16291 -9.79228 -9.67735 -9.11382 -8.32754 -8.17465 -8.10144 -6.62275 -3.94496 2.46114 2.73450 3.02964 3.17394 3.20737 3.27342 3.42960 4.08375 4.32542 4.42886 4.58160 4.75735 4.97569 5.05773 5.17421 5.24019 5.25323 5.44179 5.49095 5.60716 5.75210 5.80404 5.88540 6.06102 6.26701 6.33068 6.38883 6.65546 7.35684 7.45384 7.75994 7.85626 8.31192 8.36081 8.63938 9.00671 9.37021 9.89890 10.52950 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.027228 B = 0.005030 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.097559 B = 5565.589191 C = 6318.835933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.738 5.738 3 C 0.507 3.493 4 O -0.517 6.517 5 C 0.119 3.881 6 H 0.095 0.905 7 C -0.119 4.119 8 C -0.135 4.135 9 C 0.106 3.894 10 N -0.585 5.585 11 C 0.535 3.465 12 O -0.541 6.541 13 C 0.403 3.597 14 O -0.590 6.590 15 N -0.500 5.500 16 C -0.304 4.304 17 H 0.113 0.887 18 C 0.030 3.970 19 N -0.870 5.870 20 Si 0.939 3.061 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.399 0.601 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.404 0.596 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.402 -13.620 11.827 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.391 5.391 3 C 0.291 3.709 4 O -0.390 6.390 5 C 0.011 3.989 6 H 0.113 0.887 7 C -0.157 4.157 8 C -0.173 4.173 9 C -0.016 4.016 10 N -0.320 5.320 11 C 0.323 3.677 12 O -0.418 6.418 13 C 0.188 3.812 14 O -0.479 6.479 15 N -0.134 5.134 16 C -0.435 4.435 17 H 0.131 0.869 18 C -0.177 4.177 19 N -0.508 5.508 20 Si 0.764 3.236 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.232 0.768 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.085 0.915 34 H 0.240 0.760 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.875 -12.659 11.606 17.197 hybrid contribution -0.067 -0.039 -0.701 0.705 sum -0.942 -12.698 10.906 16.765 Atomic orbital electron populations 1.21488 0.79791 1.01807 1.02366 1.45742 1.07614 1.08524 1.77267 1.21017 0.90348 0.83833 0.75680 1.90736 1.69835 1.31252 1.47180 1.21495 0.90670 0.88906 0.97852 0.88697 1.22589 0.98598 1.01133 0.93390 1.22894 0.97165 0.96197 1.01055 1.22583 0.96979 0.94688 0.87390 1.47919 1.52011 1.17773 1.14297 1.20472 0.79836 0.87346 0.80087 1.90679 1.39615 1.64497 1.46964 1.18736 0.90002 0.87181 0.85322 1.90513 1.45343 1.64467 1.47547 1.41533 1.42723 1.16883 1.12235 1.19926 1.30074 0.93543 0.99926 0.86885 1.25588 0.96325 1.00557 0.95181 1.69503 1.35811 1.38926 1.06560 0.85664 0.78723 0.80373 0.78817 1.18704 1.20331 1.20322 0.92201 0.90870 0.92476 0.76771 0.89362 0.90265 0.90317 0.89586 0.87135 0.91463 0.76044 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 10.70 59.84 0.64 1.58 16 2 N -0.74 -8.58 5.71 -67.08 -0.38 -8.97 16 3 C 0.51 8.31 6.27 -10.99 -0.07 8.24 16 4 O -0.52 -11.20 16.12 5.56 0.09 -11.11 16 5 C 0.12 1.74 3.26 -68.10 -0.22 1.52 16 6 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 7 C -0.12 -1.19 6.47 -24.90 -0.16 -1.35 16 8 C -0.13 -1.45 7.09 -24.58 -0.17 -1.62 16 9 C 0.11 1.74 6.05 -2.53 -0.02 1.73 16 10 N -0.58 -11.25 2.76 -165.05 -0.46 -11.70 16 11 C 0.54 12.84 7.28 -11.88 -0.09 12.75 16 12 O -0.54 -13.88 16.27 5.42 0.09 -13.79 16 13 C 0.40 10.72 7.78 -11.88 -0.09 10.63 16 14 O -0.59 -16.00 13.33 5.37 0.07 -15.93 16 15 N -0.50 -13.99 5.25 -11.59 -0.06 -14.05 16 16 C -0.30 -8.61 9.68 -15.14 -0.15 -8.76 16 17 H 0.11 3.24 7.15 -52.49 -0.38 2.87 16 18 C 0.03 0.80 5.51 -17.40 -0.10 0.71 16 19 N -0.87 -24.01 13.03 55.53 0.72 -23.29 16 20 Si 0.94 20.52 29.56 -169.99 -5.02 15.50 16 21 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.40 3.09 8.83 -40.82 -0.36 2.72 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.80 7.84 -51.93 -0.41 0.39 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.11 2.03 6.17 -51.93 -0.32 1.71 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.40 11.50 7.35 -40.82 -0.30 11.20 16 35 H 0.28 7.11 8.30 -40.82 -0.34 6.77 16 LS Contribution 304.18 15.07 4.58 4.58 Total: -1.00 -36.01 304.18 -5.07 -41.08 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -4.28 Total: 12.24 kcal Atomic # 6 Polarization: 25.85 SS G_CDS: -0.42 Total: 25.43 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.18 Total: -58.01 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: 0.25 Total: -40.83 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -36.01 -5.07 -41.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042396607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.171 kcal (2) G-P(sol) polarization free energy of solvation -36.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds