Wall clock time and date at job start Thu Apr 9 2020 14:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34770 * 120.00198 * 2 1 4 4 O 1.21280 * 120.00416 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00046 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.00028 * 40.35753 * 5 3 2 7 7 C 1.54327 * 109.88286 * 279.25840 * 5 3 2 8 8 C 1.55155 * 102.94571 * 218.38953 * 7 5 3 9 9 C 1.54912 * 101.57968 * 35.50272 * 8 7 5 10 10 N 1.47024 * 109.88340 * 161.45347 * 5 3 2 11 11 C 1.34780 * 125.64847 * 298.62314 * 10 5 3 12 12 O 1.21441 * 119.99413 * 359.70939 * 11 10 5 13 13 C 1.48826 * 120.00322 * 179.71762 * 11 10 5 14 14 O 1.21500 * 120.00027 * 359.97438 * 13 11 10 15 15 N 1.34771 * 120.00079 * 179.97438 * 13 11 10 16 16 C 1.36126 * 119.99921 * 179.97438 * 15 13 11 17 17 H 1.07991 * 120.00048 * 359.97438 * 16 15 13 18 18 C 1.39590 * 119.99669 * 179.97438 * 16 15 13 19 19 N 1.31015 * 120.00063 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99713 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47130 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46842 * 119.99834 * 20 18 16 23 23 H 1.48491 * 109.47261 * 240.00291 * 20 18 16 24 24 H 1.08993 * 109.47314 * 59.99955 * 1 2 3 25 25 H 1.09004 * 109.47113 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46774 * 300.00076 * 1 2 3 27 27 H 0.97003 * 120.00049 * 180.02562 * 2 1 3 28 28 H 1.08999 * 110.71564 * 100.02707 * 7 5 3 29 29 H 1.08996 * 110.72159 * 336.75746 * 7 5 3 30 30 H 1.08997 * 111.00368 * 277.43464 * 8 7 5 31 31 H 1.08992 * 111.03872 * 153.58929 * 8 7 5 32 32 H 1.09002 * 110.36496 * 204.15483 * 9 8 7 33 33 H 1.08995 * 110.46379 * 81.87851 * 9 8 7 34 34 H 0.97001 * 120.00431 * 359.97438 * 15 13 11 35 35 H 0.97004 * 119.99240 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 1 4.0184 0.3867 -0.6642 7 6 4.1713 0.9333 1.4315 8 6 5.4041 1.8723 1.5071 9 6 4.9307 3.0762 0.6549 10 7 4.1458 2.4780 -0.4403 11 6 3.9191 3.0419 -1.6432 12 8 3.2544 2.4553 -2.4732 13 6 4.4834 4.3834 -1.9544 14 8 5.1481 4.9705 -1.1239 15 7 4.2571 4.9471 -3.1575 16 6 4.7729 6.1743 -3.4419 17 1 5.3630 6.6964 -2.7034 18 6 4.5389 6.7579 -4.6883 19 7 3.8226 6.1247 -5.5840 20 14 5.2461 8.4423 -5.0783 21 1 6.0109 8.9414 -3.9073 22 1 6.1500 8.3399 -6.2521 23 1 4.1402 9.3843 -5.3858 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9500 -0.8401 -0.0004 28 1 4.4694 -0.1063 1.5679 29 1 3.4218 1.2206 2.1690 30 1 6.2817 1.4013 1.0643 31 1 5.6027 2.1753 2.5351 32 1 5.7877 3.6183 0.2552 33 1 4.3056 3.7419 1.2500 34 1 3.7268 4.4783 -3.8208 35 1 3.6598 6.5304 -6.4499 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042396607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:58:45 Heat of formation + Delta-G solvation = -125.799064 kcal Electronic energy + Delta-G solvation = -21038.167412 eV Core-core repulsion = 17649.323759 eV Total energy + Delta-G solvation = -3388.843653 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 4.20 seconds Orbital eigenvalues (eV) -41.93377 -40.56844 -39.08846 -38.26399 -36.27826 -35.69084 -33.56343 -32.58227 -31.03159 -27.98288 -27.52544 -25.76851 -23.56517 -22.58126 -21.67849 -20.73960 -20.11260 -18.78873 -18.20316 -18.07802 -17.01158 -16.72797 -16.53931 -16.17166 -16.00784 -15.76054 -15.15599 -14.74440 -14.52079 -14.36750 -14.09392 -13.83118 -13.70959 -13.42454 -13.10641 -12.99009 -12.75226 -12.59884 -12.44807 -12.08876 -11.88104 -11.80555 -11.67857 -11.08654 -10.30301 -10.20081 -10.14634 -9.81119 -8.67734 -6.12970 0.55204 1.35385 1.41815 1.46799 1.56506 1.67821 2.17314 2.28110 2.40258 3.06500 3.13165 3.51674 3.55262 3.82767 3.95063 4.06562 4.22165 4.42194 4.51305 4.56612 4.80092 4.86902 4.89171 4.93426 5.07358 5.22641 5.26966 5.31137 5.38431 5.65740 6.10769 6.28916 6.48255 6.72109 6.93237 7.21146 7.25251 7.76555 8.48968 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.027228 B = 0.005030 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.097559 B = 5565.589191 C = 6318.835933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.716 5.716 3 C 0.498 3.502 4 O -0.583 6.583 5 C 0.106 3.894 6 H 0.119 0.881 7 C -0.103 4.103 8 C -0.116 4.116 9 C 0.093 3.907 10 N -0.580 5.580 11 C 0.531 3.469 12 O -0.568 6.568 13 C 0.394 3.606 14 O -0.603 6.603 15 N -0.513 5.513 16 C -0.344 4.344 17 H 0.101 0.899 18 C -0.007 4.007 19 N -0.899 5.899 20 Si 1.014 2.986 21 H -0.262 1.262 22 H -0.263 1.263 23 H -0.267 1.267 24 H 0.031 0.969 25 H 0.121 0.879 26 H 0.052 0.948 27 H 0.422 0.578 28 H 0.141 0.859 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.398 0.602 35 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 -15.562 13.229 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.369 5.369 3 C 0.284 3.716 4 O -0.462 6.462 5 C -0.001 4.001 6 H 0.137 0.863 7 C -0.141 4.141 8 C -0.154 4.154 9 C -0.029 4.029 10 N -0.313 5.313 11 C 0.317 3.683 12 O -0.448 6.448 13 C 0.179 3.821 14 O -0.492 6.492 15 N -0.147 5.147 16 C -0.474 4.474 17 H 0.118 0.882 18 C -0.211 4.211 19 N -0.537 5.537 20 Si 0.834 3.166 21 H -0.186 1.186 22 H -0.188 1.188 23 H -0.192 1.192 24 H 0.050 0.950 25 H 0.140 0.860 26 H 0.071 0.929 27 H 0.259 0.741 28 H 0.159 0.841 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.135 0.865 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.232 0.768 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.040 -14.699 13.060 19.662 hybrid contribution -0.364 0.452 -1.050 1.200 sum -0.405 -14.247 12.010 18.638 Atomic orbital electron populations 1.21648 0.78903 1.04443 1.00823 1.45606 1.08286 1.08215 1.74832 1.21397 0.91175 0.84100 0.74947 1.90715 1.71079 1.33731 1.50653 1.22059 0.89861 0.86697 1.01441 0.86347 1.22719 0.97750 1.03933 0.89705 1.22884 0.97877 0.93245 1.01413 1.22753 0.95490 0.97432 0.87216 1.47993 1.50920 1.19357 1.13006 1.19918 0.80041 0.86507 0.81867 1.90643 1.40935 1.64843 1.48358 1.19412 0.89471 0.88433 0.84786 1.90485 1.45647 1.65364 1.47696 1.41651 1.43186 1.17169 1.12685 1.20049 1.31979 0.94399 1.00957 0.88152 1.26617 0.95887 1.04460 0.94115 1.69577 1.36234 1.40748 1.07155 0.84592 0.78261 0.74913 0.78805 1.18585 1.18754 1.19195 0.94980 0.86043 0.92907 0.74063 0.84076 0.90123 0.88506 0.86519 0.89718 0.92980 0.76798 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.65 10.70 127.77 1.37 3.02 16 2 N -0.72 -15.00 5.71 -484.54 -2.77 -17.76 16 3 C 0.50 15.89 6.27 87.66 0.55 16.44 16 4 O -0.58 -25.98 16.12 -3.03 -0.05 -26.03 16 5 C 0.11 2.88 3.26 44.60 0.15 3.03 16 6 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 7 C -0.10 -1.61 6.47 31.78 0.21 -1.40 16 8 C -0.12 -2.07 7.09 31.99 0.23 -1.84 16 9 C 0.09 3.04 6.05 86.86 0.53 3.56 16 10 N -0.58 -22.42 2.76 -794.42 -2.19 -24.61 16 11 C 0.53 26.48 7.28 87.08 0.63 27.11 16 12 O -0.57 -30.30 16.27 -3.53 -0.06 -30.36 16 13 C 0.39 22.07 7.78 87.08 0.68 22.75 16 14 O -0.60 -34.33 13.33 -3.72 -0.05 -34.38 16 15 N -0.51 -30.32 5.25 -308.88 -1.62 -31.94 16 16 C -0.34 -20.34 9.68 84.35 0.82 -19.52 16 17 H 0.10 6.04 7.15 -2.92 -0.02 6.02 16 18 C -0.01 -0.38 5.51 85.14 0.47 0.09 16 19 N -0.90 -50.63 13.03 21.77 0.28 -50.34 16 20 Si 1.01 42.29 29.56 68.60 2.03 44.32 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 24 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.12 1.15 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.42 4.87 8.83 -92.71 -0.82 4.05 16 28 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 1.30 7.84 -2.39 -0.02 1.29 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 3.21 6.17 -2.39 -0.01 3.19 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.40 23.99 7.35 -92.71 -0.68 23.31 16 35 H 0.29 14.78 8.30 -92.71 -0.77 14.01 16 Total: -1.00 -85.27 304.18 0.83 -84.44 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -0.36 Total: 33.43 kcal Atomic # 6 Polarization: 47.62 SS G_CDS: 5.62 Total: 53.23 kcal Atomic # 7 Polarization: -118.36 SS G_CDS: -6.30 Total: -124.66 kcal Atomic # 8 Polarization: -90.61 SS G_CDS: -0.16 Total: -90.77 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -85.27 0.83 -84.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042396607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.359 kcal (2) G-P(sol) polarization free energy of solvation -85.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.20 seconds