Wall clock time and date at job start Thu Apr 9 2020 14:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86804 * 119.99710 * 2 1 4 4 H 1.48502 * 109.46997 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46938 * 299.99764 * 3 2 1 6 6 H 1.48499 * 109.47247 * 59.99783 * 3 2 1 7 7 C 1.38949 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99831 * 180.02562 * 7 2 1 9 9 N 1.37093 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99713 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00170 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99996 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47206 * 174.85466 * 12 10 9 14 14 C 1.46195 * 111.00135 * 64.89045 * 13 12 10 15 15 C 1.51268 * 109.09797 * 144.76285 * 14 13 12 16 16 C 1.53826 * 109.64522 * 92.40461 * 15 14 13 17 17 N 1.47623 * 111.28322 * 319.98057 * 16 15 14 18 18 C 1.34777 * 118.74594 * 138.30839 * 17 16 15 19 19 N 1.34773 * 120.00202 * 185.24060 * 18 17 16 20 20 O 1.21591 * 119.99943 * 5.23197 * 18 17 16 21 21 C 1.44884 * 122.50739 * 318.28999 * 17 16 15 22 22 C 1.41452 * 110.99949 * 293.85367 * 13 12 10 23 23 H 0.96996 * 119.99694 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00424 * 0.02562 * 9 7 2 25 25 H 1.09008 * 109.46709 * 54.85565 * 12 10 9 26 26 H 1.08998 * 109.47049 * 294.85674 * 12 10 9 27 27 H 1.09009 * 109.53292 * 264.64829 * 14 13 12 28 28 H 1.08998 * 109.53271 * 24.87071 * 14 13 12 29 29 H 1.09003 * 109.44666 * 212.46089 * 15 14 13 30 30 H 1.09000 * 109.44483 * 332.36284 * 15 14 13 31 31 H 1.08997 * 109.13394 * 199.51863 * 16 15 14 32 32 H 1.08994 * 109.06915 * 80.40716 * 16 15 14 33 33 H 0.96999 * 119.99618 * 5.09376 * 19 18 17 34 34 H 0.97003 * 120.00355 * 185.10252 * 19 18 17 35 35 H 1.09004 * 109.43220 * 329.67360 * 21 17 16 36 36 H 1.09001 * 109.43256 * 209.81271 * 21 17 16 37 37 H 1.09000 * 109.38293 * 311.84258 * 22 13 12 38 38 H 1.09000 * 109.38529 * 71.53429 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2126 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9974 -3.5578 0.0026 11 8 3.2103 -3.5578 0.0031 12 6 1.2439 -4.8629 0.0032 13 7 2.1937 -5.9767 -0.1199 14 6 3.0675 -6.0518 1.0498 15 6 3.3644 -7.5037 1.3534 16 6 4.6606 -7.9264 0.6411 17 7 4.7403 -7.3477 -0.7146 18 6 5.9207 -6.8569 -1.1415 19 7 5.9986 -6.2282 -2.3310 20 8 6.9154 -6.9812 -0.4533 21 6 3.5981 -7.2874 -1.6038 22 6 2.8334 -5.9603 -1.3814 23 1 -0.4849 0.8400 -0.0004 24 1 0.3534 -2.3906 0.0016 25 1 0.5502 -4.8823 -0.8374 26 1 0.6878 -4.9610 0.9355 27 1 3.9991 -5.5248 0.8432 28 1 2.5710 -5.5946 1.9056 29 1 3.4829 -7.6326 2.4293 30 1 2.5392 -8.1237 1.0029 31 1 4.6894 -9.0135 0.5672 32 1 5.5153 -7.5858 1.2254 33 1 5.1933 -6.0634 -2.8461 34 1 6.8599 -5.9406 -2.6722 35 1 2.9342 -8.1273 -1.3989 36 1 3.9400 -7.3402 -2.6375 37 1 2.0854 -5.8381 -2.1647 38 1 3.5354 -5.1274 -1.4202 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111686708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:58:07 Heat of formation + Delta-G solvation = -49.508314 kcal Electronic energy + Delta-G solvation = -21841.745167 eV Core-core repulsion = 18526.616913 eV Total energy + Delta-G solvation = -3315.128254 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.44115 -38.93809 -37.11066 -34.78763 -33.99384 -33.71739 -31.98673 -31.33230 -29.04112 -26.52681 -25.61531 -24.10375 -22.39050 -20.67289 -19.40496 -19.27131 -18.21360 -17.82971 -17.02779 -16.05820 -15.66746 -15.26326 -15.15845 -14.90857 -14.47703 -14.18560 -13.79316 -13.73104 -13.39787 -13.02408 -12.70169 -12.17981 -11.85304 -11.65626 -11.54712 -11.35358 -11.09641 -10.99270 -10.70925 -10.43468 -10.37915 -10.28840 -10.01115 -9.56194 -9.52072 -9.07388 -8.46966 -8.03172 -7.50206 -6.48141 -3.89385 2.94113 3.10902 3.22556 3.29719 3.37641 3.81532 4.11622 4.19203 4.35027 4.92966 5.04262 5.06665 5.14923 5.20416 5.35452 5.43777 5.50992 5.76352 5.79778 5.88678 5.96965 6.03969 6.09832 6.20213 6.21240 6.42669 6.54433 6.72236 6.90052 7.06089 7.35526 7.48834 7.70252 7.98793 7.99449 8.53385 8.76122 9.10987 9.47033 9.97654 10.68581 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.025535 B = 0.004928 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.253720 B = 5680.030279 C = 6194.421118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.928 3.072 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.558 5.558 10 C 0.404 3.596 11 O -0.593 6.593 12 C 0.049 3.951 13 N -0.534 5.534 14 C 0.074 3.926 15 C -0.132 4.132 16 C 0.132 3.868 17 N -0.618 5.618 18 C 0.708 3.292 19 N -0.866 5.866 20 O -0.602 6.602 21 C 0.113 3.887 22 C 0.039 3.961 23 H 0.272 0.728 24 H 0.392 0.608 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.397 0.603 34 H 0.410 0.590 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.350 -14.078 -3.493 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.755 3.245 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.194 5.194 10 C 0.189 3.811 11 O -0.479 6.479 12 C -0.083 4.083 13 N -0.256 5.256 14 C -0.053 4.053 15 C -0.171 4.171 16 C 0.010 3.990 17 N -0.355 5.355 18 C 0.408 3.592 19 N -0.435 5.435 20 O -0.481 6.481 21 C -0.011 4.011 22 C -0.092 4.092 23 H 0.082 0.918 24 H 0.226 0.774 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.227 0.773 34 H 0.241 0.759 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.341 -14.514 -2.908 14.987 hybrid contribution -0.040 1.987 -0.484 2.046 sum 2.301 -12.527 -3.392 13.181 Atomic orbital electron populations 1.69616 1.05942 1.28161 1.50287 1.25272 0.95614 0.99772 0.97149 0.85825 0.79719 0.81166 0.77794 1.19279 1.20685 1.20660 1.19747 0.93358 0.82406 1.47558 0.88031 1.42029 1.09246 1.04902 1.63234 1.21117 0.88965 0.86026 0.84950 1.90510 1.13801 1.87144 1.56442 1.22074 0.94967 0.87931 1.03282 1.58842 1.22130 1.42207 1.02447 1.21430 0.97342 0.94824 0.91707 1.21953 0.97158 0.98081 0.99889 1.21705 0.99361 0.96580 0.81384 1.46940 1.08492 1.63551 1.16533 1.15951 0.83699 0.78034 0.81561 1.43122 1.13289 1.64786 1.22267 1.90912 1.35454 1.65141 1.56633 1.21668 0.87800 0.99022 0.92640 1.21911 0.98540 0.97306 0.91413 0.91837 0.77438 0.89591 0.89345 0.91852 0.91798 0.90641 0.90616 0.92441 0.89617 0.77286 0.75875 0.89686 0.90813 0.90716 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.24 9.68 -14.94 -0.14 -8.39 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -13.69 5.29 -10.96 -0.06 -13.75 16 10 C 0.40 9.01 7.23 -10.98 -0.08 8.93 16 11 O -0.59 -15.10 12.19 5.55 0.07 -15.03 16 12 C 0.05 0.81 5.58 -4.98 -0.03 0.78 16 13 N -0.53 -8.08 3.99 -240.94 -0.96 -9.04 16 14 C 0.07 1.19 4.14 -5.08 -0.02 1.17 16 15 C -0.13 -1.62 5.78 -27.17 -0.16 -1.77 16 16 C 0.13 1.73 6.11 -3.00 -0.02 1.71 16 17 N -0.62 -8.56 2.18 -178.16 -0.39 -8.95 16 18 C 0.71 11.33 8.48 -86.92 -0.74 10.59 16 19 N -0.87 -10.71 8.63 27.63 0.24 -10.47 16 20 O -0.60 -11.95 16.52 5.29 0.09 -11.87 16 21 C 0.11 1.29 5.16 -3.97 -0.02 1.27 16 22 C 0.04 0.56 4.78 -5.74 -0.03 0.53 16 23 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 24 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 25 H 0.09 1.27 7.92 -51.92 -0.41 0.86 16 26 H 0.09 1.35 7.94 -51.93 -0.41 0.94 16 27 H 0.06 1.27 6.23 -51.92 -0.32 0.95 16 28 H 0.06 1.06 7.57 -51.93 -0.39 0.67 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.86 7.98 -51.93 -0.41 0.44 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.29 7.06 -51.93 -0.37 0.92 16 33 H 0.40 4.13 6.50 -40.82 -0.27 3.87 16 34 H 0.41 4.49 8.93 -40.82 -0.36 4.12 16 35 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 36 H 0.07 0.67 6.52 -51.93 -0.34 0.33 16 37 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 38 H 0.06 1.12 6.12 -51.93 -0.32 0.80 16 LS Contribution 303.53 15.07 4.57 4.57 Total: -1.00 -33.27 303.53 -7.18 -40.45 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -5.11 Total: 16.20 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: -1.33 Total: 15.36 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: -0.45 Total: -65.55 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: 0.15 Total: -26.90 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.27 -7.18 -40.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111686708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.056 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds