Wall clock time and date at job start Thu Apr 9 2020 15:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.40925 * 2 1 4 4 C 1.53248 * 109.40618 * 119.83953 * 2 1 3 5 5 S 1.81897 * 108.50912 * 182.12267 * 4 2 1 6 6 C 1.81899 * 101.91484 * 308.69928 * 5 4 2 7 7 C 1.53244 * 108.50472 * 51.30170 * 6 5 4 8 8 N 1.46463 * 109.86342 * 297.99613 * 7 6 5 9 9 C 1.46891 * 111.00520 * 197.76903 * 8 7 6 10 10 C 1.50699 * 109.47260 * 69.71335 * 9 8 7 11 11 O 1.21287 * 119.99809 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00324 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99586 * 0.02562 * 12 10 9 14 14 C 1.46501 * 120.00097 * 180.02562 * 12 10 9 15 15 C 1.50700 * 109.46868 * 90.00081 * 14 12 10 16 16 H 1.08001 * 120.00386 * 359.97438 * 15 14 12 17 17 C 1.37883 * 119.99863 * 180.02562 * 15 14 12 18 18 N 1.31510 * 119.99746 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99819 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47112 * 90.00519 * 19 17 15 21 21 H 1.48500 * 109.47216 * 210.00172 * 19 17 15 22 22 H 1.48493 * 109.47408 * 330.00053 * 19 17 15 23 23 H 1.08999 * 109.47339 * 292.13662 * 1 2 3 24 24 H 1.09008 * 109.47110 * 52.13485 * 1 2 3 25 25 H 1.09000 * 109.46989 * 172.13662 * 1 2 3 26 26 H 1.09003 * 109.63110 * 62.41914 * 4 2 1 27 27 H 1.09005 * 109.79509 * 301.93006 * 4 2 1 28 28 H 1.08995 * 109.63104 * 171.01228 * 6 5 4 29 29 H 1.09000 * 109.62916 * 291.59735 * 6 5 4 30 30 H 1.09001 * 109.40316 * 177.87814 * 7 6 5 31 31 H 1.09001 * 109.40535 * 58.12114 * 7 6 5 32 32 H 1.08998 * 109.47711 * 189.71466 * 9 8 7 33 33 H 1.09007 * 109.47212 * 309.71804 * 9 8 7 34 34 H 1.08993 * 109.47326 * 90.00359 * 13 12 10 35 35 H 1.09007 * 109.47031 * 209.99966 * 13 12 10 36 36 H 1.09000 * 109.47242 * 329.99754 * 13 12 10 37 37 H 1.08999 * 109.46871 * 209.99912 * 14 12 10 38 38 H 1.08997 * 109.46914 * 330.00183 * 14 12 10 39 39 H 0.96998 * 119.99653 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8922 1.0281 0.0000 4 6 2.0391 -0.7192 1.2538 5 16 3.8568 -0.6498 1.2612 6 6 4.2629 -1.2661 -0.4013 7 6 3.4476 -0.4715 -1.4271 8 7 2.0167 -0.6857 -1.1992 9 6 1.2322 -0.3016 -2.3802 10 6 1.4881 -1.2836 -3.4944 11 8 2.2488 -2.2122 -3.3214 12 7 0.8716 -1.1298 -4.6830 13 6 -0.0468 -0.0078 -4.8921 14 6 1.1200 -2.0847 -5.7660 15 6 0.1237 -3.2121 -5.6799 16 1 -0.6199 -3.2171 -4.8966 17 6 0.1620 -4.2378 -6.6005 18 7 -0.7078 -5.2214 -6.5256 19 14 1.4485 -4.2296 -7.9548 20 1 2.6661 -4.9383 -7.4852 21 1 0.9079 -4.9166 -9.1552 22 1 1.7942 -2.8275 -8.3007 23 1 -0.3634 0.3872 0.9519 24 1 -0.3634 0.6308 -0.8114 25 1 -0.3633 -1.0180 -0.1406 26 1 1.7125 -1.7590 1.2376 27 1 1.6502 -0.2271 2.1453 28 1 5.3270 -1.1283 -0.5931 29 1 4.0092 -2.3238 -0.4718 30 1 3.7079 -0.8036 -2.4322 31 1 3.6754 0.5897 -1.3273 32 1 0.1716 -0.3056 -2.1289 33 1 1.5256 0.6976 -2.7021 34 1 0.5075 0.8491 -5.2747 35 1 -0.8137 -0.2951 -5.6115 36 1 -0.5178 0.2574 -3.9455 37 1 1.0155 -1.5800 -6.7264 38 1 2.1298 -2.4844 -5.6734 39 1 -0.6810 -5.9428 -7.1735 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070219829.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:01:40 Heat of formation + Delta-G solvation = -14.916774 kcal Electronic energy + Delta-G solvation = -19733.376532 eV Core-core repulsion = 16802.896921 eV Total energy + Delta-G solvation = -2930.479611 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.70316 -37.85685 -34.90773 -32.86878 -32.59091 -31.13977 -28.67815 -27.47486 -26.35857 -25.41041 -22.81512 -22.20472 -20.25863 -18.48766 -17.04270 -16.97074 -16.47757 -15.95544 -15.62071 -14.92854 -14.72540 -14.27343 -14.03338 -13.94576 -13.45408 -12.93537 -12.70581 -12.49519 -12.41448 -12.32751 -12.27857 -12.02814 -11.94663 -11.63976 -11.47316 -11.22042 -10.91190 -10.75317 -10.53756 -10.14865 -9.74348 -9.54299 -9.05504 -8.59734 -8.31617 -7.74701 -7.70662 -6.09396 -4.08117 1.75713 2.46688 3.27764 3.30482 3.34060 3.35600 3.44740 4.02682 4.38671 4.55136 4.76773 4.88207 5.01629 5.10588 5.14850 5.22011 5.25908 5.28340 5.35130 5.41248 5.51102 5.56997 5.66376 5.77067 5.79674 5.84013 5.93776 6.05763 6.11091 6.63102 6.84392 6.94686 7.04473 7.32506 7.60133 8.23218 8.46343 8.92820 8.99637 9.50876 11.04108 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027346 B = 0.004654 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.653869 B = 6014.291965 C = 6357.295780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.085 3.915 3 H 0.053 0.947 4 C -0.066 4.066 5 S -0.290 6.290 6 C -0.065 4.065 7 C 0.061 3.939 8 N -0.529 5.529 9 C 0.035 3.965 10 C 0.506 3.494 11 O -0.522 6.522 12 N -0.601 5.601 13 C 0.084 3.916 14 C 0.217 3.783 15 C -0.528 4.528 16 H 0.074 0.926 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.877 3.123 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.266 1.266 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.040 0.960 32 H 0.110 0.890 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.029 0.971 38 H 0.036 0.964 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.998 14.828 11.432 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.025 4.025 3 H 0.071 0.929 4 C -0.215 4.215 5 S -0.062 6.062 6 C -0.214 4.214 7 C -0.069 4.069 8 N -0.255 5.255 9 C -0.095 4.095 10 C 0.292 3.708 11 O -0.398 6.398 12 N -0.334 5.334 13 C -0.061 4.061 14 C 0.097 3.903 15 C -0.567 4.567 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.191 1.191 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.058 0.942 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.016 13.988 12.335 19.312 hybrid contribution -0.234 0.260 -1.829 1.862 sum 4.781 14.247 10.506 18.337 Atomic orbital electron populations 1.22062 0.93549 1.03458 1.02182 1.21758 0.95816 0.95465 0.89445 0.92877 1.23537 0.92752 1.05086 1.00093 1.86739 1.08613 1.87052 1.23839 1.23476 1.02463 1.03803 0.91654 1.22231 0.86660 0.97374 1.00588 1.60707 1.03122 1.59579 1.02067 1.22143 1.00407 0.96696 0.90269 1.20197 0.81491 0.86246 0.82890 1.90659 1.36497 1.32105 1.80540 1.47852 1.44041 1.27894 1.13611 1.21651 0.93845 0.88768 1.01787 1.19639 0.97965 0.88311 0.84413 1.21326 1.15672 1.05119 1.14548 0.90794 1.24860 0.95581 0.95016 0.97553 1.69896 1.36025 1.11041 1.36638 0.86847 0.82332 0.78703 0.81762 1.19915 1.21072 1.19127 0.91595 0.91828 0.90895 0.88792 0.87690 0.87739 0.88390 0.88336 0.94160 0.87198 0.92466 0.93735 0.90470 0.92399 0.95318 0.94635 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.00 37.15 0.30 -1.13 16 2 C 0.08 0.94 2.49 -67.82 -0.17 0.77 16 3 H 0.05 0.57 7.91 -51.93 -0.41 0.16 16 4 C -0.07 -0.72 5.96 37.29 0.22 -0.50 16 5 S -0.29 -3.60 22.40 -107.50 -2.41 -6.01 16 6 C -0.07 -0.85 6.69 37.28 0.25 -0.60 16 7 C 0.06 0.83 4.95 -3.94 -0.02 0.81 16 8 N -0.53 -7.43 3.98 -228.49 -0.91 -8.34 16 9 C 0.04 0.50 3.57 -4.98 -0.02 0.48 16 10 C 0.51 9.94 7.21 -10.98 -0.08 9.86 16 11 O -0.52 -12.44 14.40 5.55 0.08 -12.36 16 12 N -0.60 -12.01 2.86 -182.95 -0.52 -12.53 16 13 C 0.08 1.22 10.24 59.85 0.61 1.83 16 14 C 0.22 5.25 4.23 -5.19 -0.02 5.23 16 15 C -0.53 -15.11 9.94 -34.44 -0.34 -15.46 16 16 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 17 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 18 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 19 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 20 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 23 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 24 H 0.06 0.54 6.56 -51.92 -0.34 0.20 16 25 H 0.07 0.80 8.12 -51.93 -0.42 0.37 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.10 1.56 6.16 -51.93 -0.32 1.24 16 31 H 0.04 0.50 7.91 -51.93 -0.41 0.08 16 32 H 0.11 1.39 4.61 -51.93 -0.24 1.16 16 33 H 0.06 0.68 8.05 -51.92 -0.42 0.26 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 36 H 0.06 0.68 6.44 -51.93 -0.33 0.34 16 37 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 38 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 317.59 15.07 4.79 4.79 Total: -1.00 -33.66 317.59 -8.40 -42.06 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -6.17 Total: -0.82 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 0.63 Total: 3.29 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.66 Total: -47.79 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -2.41 Total: -6.01 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.66 -8.40 -42.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070219829.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.145 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds