Wall clock time and date at job start Thu Apr 9 2020 15:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36265 * 126.34225 * 2 1 4 4 N 1.30143 * 110.02532 * 180.02562 * 3 2 1 5 5 C 1.35560 * 109.57737 * 359.97438 * 4 3 2 6 6 C 1.37421 * 126.34412 * 180.02562 * 2 1 3 7 7 C 1.39302 * 135.20499 * 359.95877 * 6 2 1 8 8 C 1.36653 * 119.07732 * 180.02562 * 7 6 2 9 9 N 1.32355 * 121.50761 * 0.02562 * 8 7 6 10 10 C 1.32254 * 122.26024 * 359.97438 * 9 8 7 11 11 N 1.38862 * 120.01720 * 179.72255 * 10 9 8 12 12 C 1.46899 * 110.99988 * 236.04653 * 11 10 9 13 13 C 1.50704 * 109.46971 * 190.00116 * 12 11 10 14 14 H 1.07998 * 119.99884 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99677 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99738 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00324 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47487 * 90.00040 * 17 15 13 19 19 H 1.48505 * 109.47130 * 210.00380 * 17 15 13 20 20 H 1.48501 * 109.47151 * 329.99978 * 17 15 13 21 21 C 1.46899 * 110.99980 * 0.02562 * 11 10 9 22 22 C 1.53003 * 117.50221 * 124.79062 * 21 11 10 23 23 C 1.52998 * 117.50141 * 56.13109 * 21 11 10 24 24 H 1.09000 * 109.47157 * 269.97177 * 1 2 3 25 25 H 1.08996 * 109.47291 * 29.97716 * 1 2 3 26 26 H 1.08998 * 109.46892 * 149.97642 * 1 2 3 27 27 H 1.08003 * 124.98473 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.45762 * 0.02562 * 7 6 2 29 29 H 1.08004 * 119.25124 * 179.97438 * 8 7 6 30 30 H 1.09001 * 109.47356 * 310.00308 * 12 11 10 31 31 H 1.08996 * 109.46978 * 70.00094 * 12 11 10 32 32 H 0.96998 * 120.00353 * 180.02562 * 16 15 13 33 33 H 1.09009 * 115.54926 * 270.46086 * 21 11 10 34 34 H 1.09000 * 117.49130 * 0.02562 * 22 21 11 35 35 H 1.08995 * 117.49886 * 145.01430 * 22 21 11 36 36 H 1.09000 * 117.49931 * 214.98206 * 23 21 11 37 37 H 1.08999 * 117.49704 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2725 1.0976 0.0000 4 7 3.5215 0.7320 -0.0005 5 6 3.5986 -0.6214 -0.0004 6 6 2.2794 -1.1069 -0.0005 7 6 2.0747 -2.4848 -0.0004 8 6 3.1584 -3.3172 -0.0005 9 7 4.3943 -2.8437 -0.0002 10 6 4.6534 -1.5467 -0.0003 11 7 5.9685 -1.1010 0.0059 12 6 6.2155 -0.2054 1.1438 13 6 7.5642 0.4481 0.9851 14 1 8.1763 0.2212 0.1248 15 6 8.0164 1.3357 1.9383 16 7 9.1931 1.9064 1.7996 17 14 6.9573 1.7288 3.4259 18 1 7.2703 0.7769 4.5219 19 1 7.2360 3.1151 3.8796 20 1 5.5236 1.6069 3.0589 21 6 6.9073 -2.2309 0.0112 22 6 7.9598 -2.2802 -1.0981 23 6 6.7826 -3.2584 -1.1156 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.9267 2.1208 0.0004 28 1 1.0733 -2.8895 -0.0002 29 1 3.0029 -4.3860 0.0000 30 1 5.4417 0.5616 1.1772 31 1 6.1971 -0.7806 2.0695 32 1 9.5116 2.5306 2.4703 33 1 7.1968 -2.5970 0.9963 34 1 7.9559 -1.4740 -1.8316 35 1 8.9416 -2.6789 -0.8430 36 1 6.9903 -4.3003 -0.8719 37 1 6.0037 -3.0962 -1.8606 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236106975.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:01:22 Heat of formation + Delta-G solvation = 143.413987 kcal Electronic energy + Delta-G solvation = -20975.039193 eV Core-core repulsion = 17948.274119 eV Total energy + Delta-G solvation = -3026.765074 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.10080 -39.03917 -36.91848 -34.46819 -33.51297 -32.30386 -30.77460 -29.11787 -27.17055 -26.91010 -23.31877 -22.97947 -21.67565 -21.54945 -20.84209 -19.44891 -17.38493 -17.24327 -16.67199 -15.82905 -15.71830 -15.27292 -14.70888 -14.56981 -14.04487 -13.61430 -13.58404 -13.42236 -12.99007 -12.58590 -12.44890 -12.19363 -11.88980 -11.72012 -10.90875 -10.78130 -10.75167 -10.37191 -9.92467 -9.78233 -9.71094 -9.47885 -9.32249 -8.93573 -8.70070 -8.60623 -8.44986 -7.12151 -5.98882 -3.95409 1.17880 1.76017 2.63075 3.02363 3.33254 3.40071 3.46722 4.04951 4.27932 4.47253 4.48777 4.53205 4.67568 4.76298 4.91509 5.00669 5.13020 5.28096 5.33944 5.37513 5.55173 5.72112 5.75889 5.84245 6.05744 6.24846 6.34339 6.42581 6.51418 6.66230 6.72894 6.86214 6.91457 7.05716 7.20969 7.57182 7.66958 7.92815 8.15473 8.53292 8.68857 9.10889 9.61628 11.14078 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.007843 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.264130 B = 3569.027889 C = 4906.232524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.496 5.496 3 C 0.228 3.772 4 N -0.443 5.443 5 C -0.024 4.024 6 C 0.098 3.902 7 C -0.223 4.223 8 C 0.134 3.866 9 N -0.534 5.534 10 C 0.407 3.593 11 N -0.427 5.427 12 C 0.169 3.831 13 C -0.504 4.504 14 H 0.087 0.913 15 C 0.074 3.926 16 N -0.898 5.898 17 Si 0.867 3.133 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.264 1.264 21 C 0.045 3.955 22 C -0.164 4.164 23 C -0.151 4.151 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.213 0.787 28 H 0.122 0.878 29 H 0.154 0.846 30 H 0.063 0.937 31 H -0.008 1.008 32 H 0.263 0.737 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.332 -7.237 -3.541 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.188 5.188 3 C -0.058 4.058 4 N -0.160 5.160 5 C -0.147 4.147 6 C -0.019 4.019 7 C -0.249 4.249 8 C -0.017 4.017 9 N -0.252 5.252 10 C 0.165 3.835 11 N -0.140 5.140 12 C 0.046 3.954 13 C -0.543 4.543 14 H 0.105 0.895 15 C -0.128 4.128 16 N -0.537 5.537 17 Si 0.694 3.306 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.188 1.188 21 C -0.063 4.063 22 C -0.202 4.202 23 C -0.189 4.189 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.229 0.771 28 H 0.140 0.860 29 H 0.171 0.829 30 H 0.081 0.919 31 H 0.010 0.990 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.778 -6.852 -3.859 18.529 hybrid contribution -2.199 0.189 1.425 2.628 sum -18.977 -6.663 -2.433 20.259 Atomic orbital electron populations 1.21907 0.76418 1.04366 1.03207 1.45224 1.07060 1.05457 1.61017 1.25486 0.85092 0.93162 1.02063 1.70459 1.17550 1.10611 1.17371 1.19300 0.91911 0.90937 1.12598 1.18771 0.90942 0.89670 1.02497 1.20300 1.00613 0.89020 1.14942 1.21896 0.86667 0.99440 0.93701 1.67982 1.22984 1.12773 1.21478 1.19626 0.89671 0.86407 0.87823 1.58523 0.97596 1.15698 1.42160 1.20535 1.00399 0.90898 0.83538 1.20936 0.99781 1.24242 1.09311 0.89544 1.24766 0.94817 0.95559 0.97647 1.69876 1.18477 1.29900 1.35492 0.86970 0.81993 0.77925 0.83691 1.20441 1.21005 1.18849 1.21924 0.97460 0.92484 0.94399 1.23077 0.93667 1.01559 1.01870 1.22827 0.99986 0.94891 1.01185 0.90976 0.89449 0.90031 0.77085 0.86010 0.82853 0.91929 0.99003 0.92693 0.88750 0.88712 0.89169 0.89450 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 11.19 59.85 0.67 1.26 16 2 N -0.50 -6.41 3.20 -123.13 -0.39 -6.80 16 3 C 0.23 3.30 12.51 -89.54 -1.12 2.18 16 4 N -0.44 -8.97 9.75 -11.88 -0.12 -9.08 16 5 C -0.02 -0.49 6.47 -84.56 -0.55 -1.04 16 6 C 0.10 1.60 6.92 -84.08 -0.58 1.01 16 7 C -0.22 -3.07 10.08 -39.76 -0.40 -3.47 16 8 C 0.13 1.97 11.10 -17.90 -0.20 1.77 16 9 N -0.53 -9.88 7.32 -12.46 -0.09 -9.97 16 10 C 0.41 8.67 6.18 -154.83 -0.96 7.71 16 11 N -0.43 -10.05 4.68 -166.69 -0.78 -10.83 16 12 C 0.17 4.44 3.60 -4.97 -0.02 4.42 16 13 C -0.50 -14.82 9.29 -34.44 -0.32 -15.14 16 14 H 0.09 2.73 7.49 -52.49 -0.39 2.33 16 15 C 0.07 2.19 5.47 -17.82 -0.10 2.09 16 16 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 17 Si 0.87 22.27 27.47 -169.99 -4.67 17.60 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.26 -6.69 6.54 56.52 0.37 -6.32 16 21 C 0.05 0.96 4.08 -67.71 -0.28 0.68 16 22 C -0.16 -3.16 10.03 -26.69 -0.27 -3.43 16 23 C -0.15 -2.67 8.67 -26.70 -0.23 -2.90 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.21 2.02 8.06 -52.48 -0.42 1.60 16 28 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.06 1.70 5.00 -51.93 -0.26 1.44 16 31 H -0.01 -0.21 7.50 -51.93 -0.39 -0.59 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.09 2.06 8.04 -51.92 -0.42 1.64 16 34 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 35 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.09 1.57 7.65 -51.93 -0.40 1.17 16 LS Contribution 309.71 15.07 4.67 4.67 Total: -1.00 -35.71 309.71 -9.78 -45.49 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.83 Total: 0.96 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -4.35 Total: -4.84 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -0.61 Total: -63.87 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.71 -9.78 -45.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236106975.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.908 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds