Wall clock time and date at job start Thu Apr 9 2020 15:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47237 * 2 1 4 4 C 1.38890 * 119.99809 * 179.97438 * 3 2 1 5 5 C 1.39199 * 120.61265 * 355.53936 * 4 3 2 6 6 N 1.31564 * 120.76491 * 180.26287 * 5 4 3 7 7 C 1.31938 * 122.17796 * 359.73633 * 6 5 4 8 8 C 1.37921 * 121.13775 * 0.02562 * 7 6 5 9 9 C 1.39980 * 119.08877 * 359.97438 * 8 7 6 10 10 C 1.47734 * 120.97807 * 179.97438 * 9 8 7 11 11 O 1.21565 * 120.00261 * 224.16906 * 10 9 8 12 12 N 1.34780 * 119.99680 * 44.16881 * 10 9 8 13 13 C 1.46499 * 119.99708 * 4.94326 * 12 10 9 14 14 C 1.46498 * 119.99865 * 185.22194 * 12 10 9 15 15 H 1.09004 * 109.47261 * 359.72253 * 14 12 10 16 16 C 1.53002 * 109.47221 * 119.72239 * 14 12 10 17 17 C 1.50695 * 109.47039 * 239.72458 * 14 12 10 18 18 H 1.07997 * 120.00176 * 359.97438 * 17 14 12 19 19 C 1.37876 * 120.00151 * 180.02562 * 17 14 12 20 20 N 1.31522 * 119.99981 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 120.00081 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.47069 * 60.00113 * 21 19 17 23 23 H 1.48507 * 109.47002 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47389 * 299.99817 * 21 19 17 25 25 H 1.09004 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47116 * 299.99704 * 1 2 3 27 27 H 1.08995 * 109.47045 * 59.99846 * 1 2 3 28 28 H 1.09005 * 109.47270 * 239.99882 * 2 1 3 29 29 H 1.09000 * 109.47210 * 120.00589 * 2 1 3 30 30 H 0.96994 * 119.99827 * 0.02562 * 3 2 1 31 31 H 1.08012 * 119.61618 * 0.02562 * 5 4 3 32 32 H 1.08005 * 119.42989 * 180.02562 * 7 6 5 33 33 H 1.07997 * 120.45801 * 180.02562 * 8 7 6 34 34 H 1.08997 * 109.47285 * 274.81978 * 13 12 10 35 35 H 1.09001 * 109.47200 * 34.82915 * 13 12 10 36 36 H 1.09004 * 109.46774 * 154.82889 * 13 12 10 37 37 H 1.09001 * 109.46569 * 60.00133 * 16 14 12 38 38 H 1.09001 * 109.47066 * 179.97438 * 16 14 12 39 39 H 1.08997 * 109.47156 * 299.99965 * 16 14 12 40 40 H 0.96994 * 119.99844 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3838 1.6349 0.0005 5 6 4.2989 0.5902 0.0943 6 7 5.5930 0.8275 0.1002 7 6 6.0837 2.0491 0.0138 8 6 5.2534 3.1457 -0.0874 9 6 3.8672 2.9511 -0.0984 10 6 2.9394 4.0958 -0.2046 11 8 1.9564 4.1497 0.5085 12 7 3.1828 5.0804 -1.0922 13 6 4.3058 4.9637 -2.0258 14 6 2.3282 6.2700 -1.1193 15 1 1.5528 6.1777 -0.3588 16 6 3.1747 7.5127 -0.8363 17 6 1.6873 6.3972 -2.4772 18 1 1.8961 5.6655 -3.2436 19 6 0.8353 7.4484 -2.7416 20 7 0.5814 8.3399 -1.8085 21 14 0.0414 7.6066 -4.4251 22 1 -0.7806 6.4007 -4.7001 23 1 -0.8250 8.8124 -4.4526 24 1 1.0980 7.7321 -5.4609 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3880 2.1184 0.0004 31 1 3.9423 -0.4268 0.1668 32 1 7.1541 2.1929 0.0224 33 1 5.6669 4.1409 -0.1580 34 1 5.2170 5.3188 -1.5444 35 1 4.4306 3.9204 -2.3155 36 1 4.1052 5.5655 -2.9123 37 1 3.9501 7.6049 -1.5969 38 1 2.5389 8.3978 -0.8569 39 1 3.6383 7.4206 0.1459 40 1 -0.0183 9.0792 -1.9945 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134817841.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:04:27 Heat of formation + Delta-G solvation = 2.359711 kcal Electronic energy + Delta-G solvation = -21947.993595 eV Core-core repulsion = 18762.770329 eV Total energy + Delta-G solvation = -3185.223266 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.48398 -38.53644 -36.58305 -35.33777 -33.20550 -32.21460 -31.33298 -29.32423 -28.20824 -26.28167 -25.28090 -24.56164 -23.51723 -21.76737 -21.14243 -18.95016 -17.17372 -17.05986 -16.51133 -16.23917 -15.75398 -15.18882 -14.88428 -14.47615 -14.37659 -14.10865 -13.94341 -13.58867 -12.88113 -12.68536 -12.51077 -12.41869 -11.93092 -11.87738 -11.71200 -11.60102 -11.43931 -11.09483 -10.90450 -10.78576 -10.45430 -10.33289 -10.22006 -9.74432 -9.35651 -9.24758 -8.93280 -8.47771 -7.71073 -7.44884 -6.12260 -4.20547 1.15575 1.48439 3.24203 3.27119 3.29782 3.32862 3.44597 3.81994 4.09158 4.35113 4.65806 4.84208 4.92371 4.97597 5.00545 5.10949 5.19016 5.23261 5.44537 5.60200 5.67671 5.77473 5.78892 5.95756 5.96952 5.99754 6.19368 6.34820 6.66032 6.69844 6.77903 6.99582 7.21903 7.34549 7.45806 7.64368 7.72757 7.94889 8.13318 8.16090 8.42884 8.74785 8.92922 9.45882 10.93037 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017961 B = 0.005475 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.569261 B = 5112.988262 C = 6004.918993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 N -0.726 5.726 4 C 0.213 3.787 5 C 0.017 3.983 6 N -0.438 5.438 7 C 0.019 3.981 8 C -0.089 4.089 9 C -0.162 4.162 10 C 0.553 3.447 11 O -0.553 6.553 12 N -0.580 5.580 13 C 0.083 3.917 14 C 0.257 3.743 15 H 0.064 0.936 16 C -0.147 4.147 17 C -0.527 4.527 18 H 0.059 0.941 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.416 0.584 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.139 0.861 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.031 0.969 38 H 0.094 0.906 39 H 0.011 0.989 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.413 -12.887 1.685 14.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.357 5.357 4 C 0.102 3.898 5 C -0.148 4.148 6 N -0.146 5.146 7 C -0.138 4.138 8 C -0.110 4.110 9 C -0.178 4.178 10 C 0.340 3.660 11 O -0.433 6.433 12 N -0.310 5.310 13 C -0.061 4.061 14 C 0.158 3.842 15 H 0.082 0.918 16 C -0.205 4.205 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.525 5.525 21 Si 0.727 3.273 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.202 1.202 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.256 0.744 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.157 0.843 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.050 0.950 38 H 0.113 0.887 39 H 0.030 0.970 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.253 -13.515 2.125 15.042 hybrid contribution -1.151 1.202 -1.058 1.972 sum 5.102 -12.312 1.067 13.370 Atomic orbital electron populations 1.21968 0.94241 1.02844 1.03290 1.21385 0.95158 0.83222 1.01160 1.44924 1.03490 1.08500 1.78737 1.18830 0.85836 0.93026 0.92107 1.22215 0.87867 0.97815 1.06901 1.67236 1.14507 1.24592 1.08266 1.22235 0.99998 0.87226 1.04345 1.22222 0.91951 1.01026 0.95773 1.20053 0.94655 0.92884 1.10230 1.18033 0.84815 0.82095 0.81038 1.90696 1.29093 1.78430 1.45043 1.48183 1.30317 1.20153 1.32331 1.21736 0.88610 1.01214 0.94518 1.18997 0.88332 0.78518 0.98388 0.91843 1.22097 0.99526 1.02565 0.96327 1.21253 1.27528 1.10200 0.97599 0.92298 1.24886 0.96112 0.95444 0.97237 1.69866 1.36019 1.13713 1.32895 0.86548 0.79321 0.77542 0.83931 1.20292 1.21114 1.20187 0.90865 0.91669 0.91701 0.92003 0.91984 0.74376 0.83011 0.82961 0.84295 0.93692 0.92731 0.89841 0.95030 0.88711 0.96964 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.03 37.16 0.37 -1.21 16 2 C 0.11 1.21 5.66 -4.04 -0.02 1.19 16 3 N -0.73 -10.78 5.60 -58.32 -0.33 -11.10 16 4 C 0.21 3.35 6.66 -83.43 -0.56 2.80 16 5 C 0.02 0.24 10.49 -17.31 -0.18 0.06 16 6 N -0.44 -6.28 10.32 -13.12 -0.14 -6.42 16 7 C 0.02 0.25 11.15 -17.62 -0.20 0.06 16 8 C -0.09 -1.28 8.09 -39.05 -0.32 -1.59 16 9 C -0.16 -2.79 4.91 -104.49 -0.51 -3.30 16 10 C 0.55 11.62 6.93 -12.38 -0.09 11.53 16 11 O -0.55 -13.32 14.59 5.31 0.08 -13.24 16 12 N -0.58 -12.32 2.75 -176.42 -0.49 -12.81 16 13 C 0.08 1.42 7.97 59.85 0.48 1.89 16 14 C 0.26 6.47 2.63 -69.08 -0.18 6.29 16 15 H 0.06 1.84 6.91 -51.93 -0.36 1.49 16 16 C -0.15 -3.45 8.97 37.16 0.33 -3.11 16 17 C -0.53 -14.01 7.96 -34.44 -0.27 -14.29 16 18 H 0.06 1.55 7.41 -52.49 -0.39 1.16 16 19 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -24.70 11.32 55.43 0.63 -24.07 16 21 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 29 H 0.06 0.58 7.79 -51.93 -0.40 0.17 16 30 H 0.42 7.20 6.22 -40.82 -0.25 6.95 16 31 H 0.15 1.71 6.76 -52.48 -0.35 1.35 16 32 H 0.15 1.54 8.06 -52.48 -0.42 1.11 16 33 H 0.14 1.79 6.24 -52.49 -0.33 1.46 16 34 H 0.04 0.65 6.76 -51.93 -0.35 0.30 16 35 H 0.05 0.85 6.75 -51.93 -0.35 0.49 16 36 H 0.08 1.50 7.09 -51.93 -0.37 1.13 16 37 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 38 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 324.91 15.07 4.90 4.90 Total: -1.00 -30.58 324.91 -7.15 -37.72 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.54 Total: 7.29 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -1.24 Total: 1.98 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.32 Total: -54.39 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.58 -7.15 -37.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134817841.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.082 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds