Wall clock time and date at job start Thu Apr 9 2020 15:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47237 * 2 1 4 4 C 1.38890 * 119.99809 * 179.97438 * 3 2 1 5 5 C 1.39199 * 120.61265 * 355.53936 * 4 3 2 6 6 N 1.31564 * 120.76491 * 180.26287 * 5 4 3 7 7 C 1.31938 * 122.17796 * 359.73633 * 6 5 4 8 8 C 1.37921 * 121.13775 * 0.02562 * 7 6 5 9 9 C 1.39980 * 119.08877 * 359.97438 * 8 7 6 10 10 C 1.47734 * 120.97807 * 179.97438 * 9 8 7 11 11 O 1.21565 * 120.00261 * 224.16906 * 10 9 8 12 12 N 1.34780 * 119.99680 * 44.16881 * 10 9 8 13 13 C 1.46499 * 119.99708 * 4.94326 * 12 10 9 14 14 C 1.46498 * 119.99865 * 185.22194 * 12 10 9 15 15 H 1.09004 * 109.47261 * 359.72253 * 14 12 10 16 16 C 1.53002 * 109.47221 * 119.72239 * 14 12 10 17 17 C 1.50695 * 109.47039 * 239.72458 * 14 12 10 18 18 H 1.07997 * 120.00176 * 359.97438 * 17 14 12 19 19 C 1.37876 * 120.00151 * 180.02562 * 17 14 12 20 20 N 1.31522 * 119.99981 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 120.00081 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.47069 * 60.00113 * 21 19 17 23 23 H 1.48507 * 109.47002 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47389 * 299.99817 * 21 19 17 25 25 H 1.09004 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47116 * 299.99704 * 1 2 3 27 27 H 1.08995 * 109.47045 * 59.99846 * 1 2 3 28 28 H 1.09005 * 109.47270 * 239.99882 * 2 1 3 29 29 H 1.09000 * 109.47210 * 120.00589 * 2 1 3 30 30 H 0.96994 * 119.99827 * 0.02562 * 3 2 1 31 31 H 1.08012 * 119.61618 * 0.02562 * 5 4 3 32 32 H 1.08005 * 119.42989 * 180.02562 * 7 6 5 33 33 H 1.07997 * 120.45801 * 180.02562 * 8 7 6 34 34 H 1.08997 * 109.47285 * 274.81978 * 13 12 10 35 35 H 1.09001 * 109.47200 * 34.82915 * 13 12 10 36 36 H 1.09004 * 109.46774 * 154.82889 * 13 12 10 37 37 H 1.09001 * 109.46569 * 60.00133 * 16 14 12 38 38 H 1.09001 * 109.47066 * 179.97438 * 16 14 12 39 39 H 1.08997 * 109.47156 * 299.99965 * 16 14 12 40 40 H 0.96994 * 119.99844 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3838 1.6349 0.0005 5 6 4.2989 0.5902 0.0943 6 7 5.5930 0.8275 0.1002 7 6 6.0837 2.0491 0.0138 8 6 5.2534 3.1457 -0.0874 9 6 3.8672 2.9511 -0.0984 10 6 2.9394 4.0958 -0.2046 11 8 1.9564 4.1497 0.5085 12 7 3.1828 5.0804 -1.0922 13 6 4.3058 4.9637 -2.0258 14 6 2.3282 6.2700 -1.1193 15 1 1.5528 6.1777 -0.3588 16 6 3.1747 7.5127 -0.8363 17 6 1.6873 6.3972 -2.4772 18 1 1.8961 5.6655 -3.2436 19 6 0.8353 7.4484 -2.7416 20 7 0.5814 8.3399 -1.8085 21 14 0.0414 7.6066 -4.4251 22 1 -0.7806 6.4007 -4.7001 23 1 -0.8250 8.8124 -4.4526 24 1 1.0980 7.7321 -5.4609 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3880 2.1184 0.0004 31 1 3.9423 -0.4268 0.1668 32 1 7.1541 2.1929 0.0224 33 1 5.6669 4.1409 -0.1580 34 1 5.2170 5.3188 -1.5444 35 1 4.4306 3.9204 -2.3155 36 1 4.1052 5.5655 -2.9123 37 1 3.9501 7.6049 -1.5969 38 1 2.5389 8.3978 -0.8569 39 1 3.6383 7.4206 0.1459 40 1 -0.0183 9.0792 -1.9945 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134817841.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:04:26 Heat of formation + Delta-G solvation = -17.777745 kcal Electronic energy + Delta-G solvation = -21948.866821 eV Core-core repulsion = 18762.770329 eV Total energy + Delta-G solvation = -3186.096491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.75220 -40.02477 -37.70067 -37.01290 -34.98605 -33.55201 -32.39785 -31.09101 -29.27460 -27.75649 -27.32617 -25.82163 -24.62978 -22.86270 -22.65197 -20.52938 -18.69224 -18.29654 -18.20289 -17.50785 -17.39607 -16.55283 -16.12787 -15.83439 -15.70246 -15.39065 -15.17940 -14.76715 -14.56392 -14.30671 -13.91337 -13.58679 -13.34313 -13.09162 -12.94888 -12.83555 -12.83068 -12.74960 -12.65251 -12.51315 -12.22642 -12.15308 -11.48315 -11.24655 -11.14191 -10.55977 -10.50761 -10.28839 -9.41563 -8.55664 -8.16991 -6.33503 -0.04589 0.39669 1.40092 1.41709 1.49407 1.78509 2.24571 2.37523 2.44445 2.93427 3.11146 3.56178 3.67468 3.84482 3.99305 4.08102 4.18163 4.35679 4.40377 4.45934 4.56893 4.71294 4.73826 4.85457 4.86899 4.91405 4.98274 4.99201 5.03608 5.11749 5.18581 5.43937 5.55748 5.63039 5.63809 5.99014 6.13156 6.20645 6.44777 6.72527 6.72986 7.08045 7.21738 7.40418 8.87200 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017961 B = 0.005475 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.569261 B = 5112.988262 C = 6004.918993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.109 3.891 3 N -0.736 5.736 4 C 0.202 3.798 5 C 0.024 3.976 6 N -0.444 5.444 7 C 0.025 3.975 8 C -0.083 4.083 9 C -0.189 4.189 10 C 0.548 3.452 11 O -0.597 6.597 12 N -0.587 5.587 13 C 0.083 3.917 14 C 0.262 3.738 15 H 0.011 0.989 16 C -0.132 4.132 17 C -0.539 4.539 18 H 0.058 0.942 19 C 0.018 3.982 20 N -0.915 5.915 21 Si 0.963 3.037 22 H -0.279 1.279 23 H -0.282 1.282 24 H -0.263 1.263 25 H 0.102 0.898 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.400 0.600 31 H 0.179 0.821 32 H 0.188 0.812 33 H 0.153 0.847 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.069 0.931 39 H 0.021 0.979 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.295 -14.642 0.635 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.013 4.013 3 N -0.364 5.364 4 C 0.090 3.910 5 C -0.141 4.141 6 N -0.152 5.152 7 C -0.132 4.132 8 C -0.104 4.104 9 C -0.205 4.205 10 C 0.338 3.662 11 O -0.480 6.480 12 N -0.316 5.316 13 C -0.059 4.059 14 C 0.161 3.839 15 H 0.029 0.971 16 C -0.191 4.191 17 C -0.578 4.578 18 H 0.076 0.924 19 C -0.182 4.182 20 N -0.554 5.554 21 Si 0.788 3.212 22 H -0.204 1.204 23 H -0.208 1.208 24 H -0.187 1.187 25 H 0.120 0.880 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.237 0.763 31 H 0.196 0.804 32 H 0.205 0.795 33 H 0.171 0.829 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.181 -15.304 1.059 17.386 hybrid contribution -1.731 1.681 -0.676 2.506 sum 6.450 -13.623 0.382 15.078 Atomic orbital electron populations 1.21969 0.93789 1.04283 1.01966 1.21668 0.95633 0.81335 1.02682 1.45205 1.03131 1.09610 1.78431 1.19077 0.86499 0.93018 0.92396 1.22587 0.87440 0.98388 1.05692 1.67344 1.14518 1.25164 1.08218 1.22759 1.01430 0.86289 1.02678 1.22380 0.90660 1.02294 0.95065 1.19866 0.95179 0.91939 1.13551 1.18643 0.84800 0.82720 0.80061 1.90658 1.31290 1.79433 1.46658 1.48138 1.30913 1.19212 1.33344 1.21923 0.88152 1.02337 0.93520 1.18596 0.88289 0.80809 0.96229 0.97079 1.21880 0.99133 1.00620 0.97429 1.21489 1.28007 1.10215 0.98073 0.92392 1.25696 0.96566 0.95128 1.00794 1.70007 1.36506 1.14155 1.34719 0.85539 0.78561 0.77281 0.79810 1.20428 1.20768 1.18741 0.87959 0.92887 0.93135 0.90386 0.90205 0.76279 0.80365 0.79477 0.82913 0.90578 0.91017 0.90891 0.93268 0.91251 0.95955 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 10.03 71.98 0.72 -2.27 16 2 C 0.11 2.15 5.66 86.38 0.49 2.64 16 3 N -0.74 -21.80 5.60 -338.42 -1.90 -23.70 16 4 C 0.20 6.14 6.66 38.82 0.26 6.40 16 5 C 0.02 0.61 10.49 84.96 0.89 1.50 16 6 N -0.44 -11.29 10.32 -195.42 -2.02 -13.30 16 7 C 0.03 0.57 11.15 84.60 0.94 1.51 16 8 C -0.08 -2.20 8.09 22.62 0.18 -2.02 16 9 C -0.19 -6.39 4.91 -19.78 -0.10 -6.49 16 10 C 0.55 23.63 6.93 86.75 0.60 24.23 16 11 O -0.60 -30.45 14.59 -3.92 -0.06 -30.51 16 12 N -0.59 -25.25 2.75 -830.34 -2.29 -27.54 16 13 C 0.08 2.71 7.97 127.77 1.02 3.73 16 14 C 0.26 13.64 2.63 44.24 0.12 13.76 16 15 H 0.01 0.70 6.91 -2.38 -0.02 0.68 16 16 C -0.13 -6.30 8.97 71.98 0.65 -5.66 16 17 C -0.54 -29.25 7.96 25.60 0.20 -29.04 16 18 H 0.06 3.08 7.41 -2.91 -0.02 3.05 16 19 C 0.02 0.99 5.30 84.65 0.45 1.43 16 20 N -0.92 -52.32 11.32 21.45 0.24 -52.07 16 21 Si 0.96 42.79 29.54 68.60 2.03 44.82 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 25 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 1.30 8.11 -2.38 -0.02 1.28 16 29 H 0.08 1.30 7.79 -2.39 -0.02 1.28 16 30 H 0.40 14.49 6.22 -92.71 -0.58 13.91 16 31 H 0.18 3.40 6.76 -2.90 -0.02 3.38 16 32 H 0.19 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.15 3.50 6.24 -2.91 -0.02 3.48 16 34 H 0.08 2.00 6.76 -2.39 -0.02 1.99 16 35 H 0.07 2.09 6.75 -2.39 -0.02 2.08 16 36 H 0.07 2.54 7.09 -2.38 -0.02 2.52 16 37 H 0.05 2.11 7.67 -2.39 -0.02 2.10 16 38 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 39 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -68.87 324.91 2.92 -65.95 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.48 Total: 26.61 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 6.43 Total: 9.74 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -5.96 Total: -116.61 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.06 Total: -30.51 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -68.87 2.92 -65.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134817841.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.173 kcal (2) G-P(sol) polarization free energy of solvation -68.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds