Wall clock time and date at job start Thu Apr 9 2020 15:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.53198 * 2 1 4 4 C 1.53167 * 109.52867 * 120.14512 * 2 1 3 5 5 C 1.53220 * 109.53950 * 189.20991 * 4 2 1 6 6 N 1.46680 * 108.84614 * 309.36134 * 5 4 2 7 7 N 1.39626 * 127.22913 * 197.43584 * 6 5 4 8 8 C 1.30613 * 108.87172 * 179.97438 * 7 6 5 9 9 C 1.41466 * 108.06872 * 0.02562 * 8 7 6 10 10 C 1.47434 * 126.48654 * 179.97438 * 9 8 7 11 11 O 1.21599 * 119.99620 * 143.09927 * 10 9 8 12 12 N 1.34776 * 119.99852 * 323.10133 * 10 9 8 13 13 C 1.46500 * 119.99906 * 4.54761 * 12 10 9 14 14 C 1.46500 * 119.99825 * 184.54583 * 12 10 9 15 15 C 1.50700 * 109.47285 * 89.99944 * 14 12 10 16 16 H 1.08001 * 119.99554 * 359.97438 * 15 14 12 17 17 C 1.37868 * 119.99861 * 180.02562 * 15 14 12 18 18 N 1.31519 * 120.00207 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00404 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47005 * 89.99994 * 19 17 15 21 21 H 1.48497 * 109.47443 * 210.00465 * 19 17 15 22 22 H 1.48502 * 109.47226 * 330.00675 * 19 17 15 23 23 C 1.34598 * 124.43131 * 17.41877 * 6 5 4 24 24 C 1.50806 * 124.57354 * 0.06399 * 23 6 5 25 25 H 1.08992 * 109.47462 * 299.85849 * 1 2 3 26 26 H 1.09005 * 109.46698 * 59.85561 * 1 2 3 27 27 H 1.09002 * 109.47009 * 179.85391 * 1 2 3 28 28 H 1.08994 * 109.45567 * 309.22387 * 4 2 1 29 29 H 1.08994 * 109.45535 * 69.19226 * 4 2 1 30 30 H 1.09002 * 109.57462 * 69.18614 * 5 4 2 31 31 H 1.08994 * 109.57301 * 189.56981 * 5 4 2 32 32 H 1.07996 * 125.96223 * 180.02562 * 8 7 6 33 33 H 1.08997 * 109.47302 * 84.82709 * 13 12 10 34 34 H 1.09003 * 109.46611 * 204.83059 * 13 12 10 35 35 H 1.09003 * 109.46819 * 324.82004 * 13 12 10 36 36 H 1.08999 * 109.46963 * 210.00377 * 14 12 10 37 37 H 1.09004 * 109.47030 * 329.99634 * 14 12 10 38 38 H 0.96994 * 120.00248 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.72095 * 256.01917 * 24 23 6 40 40 H 1.09003 * 109.71824 * 135.37026 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0420 -0.7249 1.2483 5 6 3.5566 -0.5284 1.3700 6 7 4.1835 -0.8727 0.0894 7 7 5.5306 -1.1579 -0.1421 8 6 5.6954 -1.4172 -1.4115 9 6 4.4377 -1.3047 -2.0493 10 6 4.1596 -1.5127 -3.4821 11 8 3.1203 -2.0399 -3.8294 12 7 5.0572 -1.1186 -4.4070 13 6 6.3512 -0.5751 -3.9869 14 6 4.7390 -1.2339 -5.8323 15 6 4.0746 0.0343 -6.3029 16 1 3.9059 0.8448 -5.6094 17 6 3.6812 0.1592 -7.6183 18 7 3.1018 1.2661 -8.0292 19 14 3.9725 -1.2430 -8.8176 20 1 2.7976 -2.1512 -8.8120 21 1 4.1672 -0.6938 -10.1835 22 1 5.1842 -1.9989 -8.4107 23 6 3.5240 -0.9648 -1.0803 24 6 2.0445 -0.7268 -1.2497 25 1 -0.3634 0.5116 0.8912 26 1 -0.3633 0.5161 -0.8887 27 1 -0.3633 -1.0277 -0.0026 28 1 1.5508 -0.3174 2.1319 29 1 1.8193 -1.7888 1.1673 30 1 3.7714 0.5121 1.6140 31 1 3.9473 -1.1774 2.1537 32 1 6.6289 -1.6729 -1.8906 33 1 7.0481 -1.3936 -3.8071 34 1 6.7451 0.0720 -4.7706 35 1 6.2230 0.0010 -3.0704 36 1 5.6570 -1.3945 -6.3977 37 1 4.0649 -2.0764 -5.9872 38 1 2.8254 1.3542 -8.9547 39 1 1.5287 -1.6809 -1.3588 40 1 1.8697 -0.1106 -2.1316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335513708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:04:48 Heat of formation + Delta-G solvation = 36.323079 kcal Electronic energy + Delta-G solvation = -21937.042546 eV Core-core repulsion = 18753.292042 eV Total energy + Delta-G solvation = -3183.750504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.56574 -38.56669 -37.20215 -34.79806 -33.07707 -32.41655 -31.04380 -29.49268 -28.00495 -26.76525 -25.78618 -24.12279 -22.75947 -21.63360 -20.91140 -19.30747 -18.34235 -16.89040 -16.81717 -15.90340 -15.28885 -15.20573 -14.99715 -14.65481 -14.32205 -14.02329 -13.74887 -13.63785 -13.11211 -12.83195 -12.49566 -12.46258 -12.27985 -12.07771 -11.81991 -11.75804 -11.35526 -11.22789 -11.02340 -10.92762 -10.85160 -10.57324 -10.46643 -10.11112 -9.50242 -9.19829 -9.00672 -8.54911 -8.32354 -7.57990 -6.04894 -4.03200 1.82498 2.40414 2.52855 3.33045 3.39000 3.41150 3.74437 4.12692 4.24650 4.36372 4.43724 4.45710 4.55229 4.93329 4.95306 5.12643 5.19507 5.26657 5.36358 5.39787 5.45731 5.54091 5.59215 5.64101 5.75097 5.77615 5.92225 5.93590 5.99926 6.13121 6.16243 6.27341 6.58194 6.80666 6.97636 7.04125 7.44911 7.65997 7.73830 8.37135 8.52354 8.98247 9.11492 9.56102 11.08551 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022209 B = 0.005022 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.424513 B = 5574.356381 C = 6382.616720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 H 0.078 0.922 4 C -0.133 4.133 5 C 0.133 3.867 6 N -0.366 5.366 7 N -0.305 5.305 8 C 0.076 3.924 9 C -0.275 4.275 10 C 0.587 3.413 11 O -0.546 6.546 12 N -0.592 5.592 13 C 0.082 3.918 14 C 0.216 3.784 15 C -0.527 4.527 16 H 0.074 0.926 17 C 0.072 3.928 18 N -0.899 5.899 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.265 1.265 23 C 0.146 3.854 24 C -0.055 4.055 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.190 0.810 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.030 0.970 37 H 0.038 0.962 38 H 0.264 0.736 39 H 0.098 0.902 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.736 -3.185 19.089 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 H 0.096 0.904 4 C -0.171 4.171 5 C 0.013 3.987 6 N -0.147 5.147 7 N -0.124 5.124 8 C -0.111 4.111 9 C -0.289 4.289 10 C 0.374 3.626 11 O -0.424 6.424 12 N -0.323 5.323 13 C -0.062 4.062 14 C 0.095 3.905 15 C -0.565 4.565 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.190 1.190 23 C 0.015 3.985 24 C -0.094 4.094 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.207 0.793 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.669 -3.235 20.008 20.279 hybrid contribution -0.038 -0.555 -1.501 1.600 sum 0.631 -3.790 18.508 18.902 Atomic orbital electron populations 1.21789 0.93722 1.02391 1.02329 1.21330 0.96949 0.99822 0.93757 0.90396 1.22069 0.92896 1.02535 0.99645 1.21826 0.92624 1.01920 0.82364 1.48450 1.05660 1.53557 1.07071 1.77019 0.93846 1.23755 1.17820 1.24263 0.98265 0.97985 0.90598 1.20056 0.93315 1.20190 0.95375 1.17148 0.83433 0.78463 0.83516 1.90713 1.25925 1.44036 1.81715 1.47617 1.15542 1.61434 1.07751 1.21827 0.85149 0.97987 1.01198 1.19674 0.96428 0.98513 0.75856 1.21355 1.38841 1.00525 0.95817 0.90791 1.24850 0.94491 0.95637 0.98032 1.69900 1.40858 1.26153 1.16892 0.86848 0.79452 0.82835 0.80560 1.19897 1.21147 1.19003 1.21269 0.95306 0.96569 0.85326 1.20608 0.86990 1.02755 0.99016 0.92407 0.91733 0.92237 0.88979 0.90464 0.89797 0.88937 0.79285 0.93760 0.90642 0.91849 0.95205 0.94359 0.92627 0.88402 0.88077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.18 37.16 0.34 -0.88 16 2 C -0.10 -0.98 2.75 -90.30 -0.25 -1.23 16 3 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 4 C -0.13 -1.04 5.23 -26.53 -0.14 -1.18 16 5 C 0.13 1.24 7.27 -3.83 -0.03 1.22 16 6 N -0.37 -5.12 4.01 -56.41 -0.23 -5.35 16 7 N -0.31 -4.68 12.54 30.93 0.39 -4.29 16 8 C 0.08 1.17 9.73 -16.84 -0.16 1.00 16 9 C -0.27 -4.97 5.36 -105.21 -0.56 -5.53 16 10 C 0.59 12.89 7.49 -12.52 -0.09 12.80 16 11 O -0.55 -13.80 16.17 5.28 0.09 -13.71 16 12 N -0.59 -12.85 2.86 -184.23 -0.53 -13.37 16 13 C 0.08 1.36 9.02 59.85 0.54 1.90 16 14 C 0.22 5.40 4.24 -5.19 -0.02 5.38 16 15 C -0.53 -15.31 9.94 -34.44 -0.34 -15.65 16 16 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 18 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 19 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 20 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 23 C 0.15 2.33 6.65 -81.61 -0.54 1.79 16 24 C -0.06 -0.77 5.02 -27.60 -0.14 -0.91 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.08 0.64 8.12 -51.93 -0.42 0.21 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.19 2.37 6.27 -52.49 -0.33 2.04 16 33 H 0.04 0.59 7.31 -51.93 -0.38 0.21 16 34 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 35 H 0.06 0.98 5.86 -51.93 -0.30 0.67 16 36 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 37 H 0.04 1.02 6.79 -51.93 -0.35 0.67 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.10 1.37 8.11 -51.93 -0.42 0.95 16 40 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 324.20 15.07 4.89 4.89 Total: -1.00 -35.61 324.20 -6.75 -42.36 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.97 Total: -1.22 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.50 Total: 0.72 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.41 Total: -50.09 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.09 Total: -13.71 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.61 -6.75 -42.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335513708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.682 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds