Wall clock time and date at job start Thu Apr 9 2020 15:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.50706 * 109.47032 * 120.00448 * 2 1 3 5 5 H 1.08001 * 119.99930 * 119.99860 * 4 2 1 6 6 C 1.37871 * 119.99762 * 299.99926 * 4 2 1 7 7 N 1.31519 * 119.99631 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00377 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.46925 * 90.00223 * 8 6 4 10 10 H 1.48497 * 109.47251 * 210.00352 * 8 6 4 11 11 H 1.48507 * 109.46917 * 330.00578 * 8 6 4 12 12 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 13 13 C 1.39001 * 119.99796 * 85.00379 * 12 2 1 14 14 C 1.39133 * 119.70724 * 0.02562 * 13 12 2 15 15 C 1.38301 * 119.09853 * 180.02562 * 14 13 12 16 16 C 1.38878 * 118.50393 * 0.02562 * 15 14 13 17 17 C 1.38023 * 119.33079 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.56910 * 180.02562 * 17 16 15 19 19 C 1.52998 * 117.50244 * 343.74041 * 18 17 16 20 20 C 1.53004 * 117.49664 * 275.08044 * 18 17 16 21 21 N 1.31972 * 120.85395 * 359.72711 * 17 16 15 22 22 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 23 23 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 24 24 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 25 25 H 0.97005 * 119.99726 * 179.97438 * 7 6 4 26 26 H 0.96995 * 120.00050 * 264.72646 * 12 2 1 27 27 H 1.08006 * 120.45533 * 359.97438 * 14 13 12 28 28 H 1.08000 * 120.74569 * 179.97438 * 15 14 13 29 29 H 1.08002 * 120.33694 * 179.97438 * 16 15 14 30 30 H 1.09003 * 115.55250 * 129.42225 * 18 17 16 31 31 H 1.08998 * 117.49714 * 0.02562 * 19 18 17 32 32 H 1.09002 * 117.49754 * 145.02329 * 19 18 17 33 33 H 1.09002 * 117.50079 * 214.98203 * 20 18 17 34 34 H 1.08995 * 117.50190 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5887 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9951 3.9072 11 1 0.8491 2.1772 1.4923 12 7 2.0182 -0.6906 -1.1963 13 6 2.1510 0.0029 -2.3936 14 6 1.8190 1.3529 -2.4489 15 6 1.9554 2.0305 -3.6468 16 6 2.4206 1.3327 -4.7537 17 6 2.7314 -0.0062 -4.6273 18 6 3.2372 -0.7684 -5.8249 19 6 3.0281 -0.1384 -7.2033 20 6 2.1960 -1.3521 -6.7820 21 7 2.5969 -0.6259 -3.4700 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.9039 -0.5278 4.4375 26 1 2.2527 -1.6308 -1.1518 27 1 1.4587 1.8646 -1.5686 28 1 1.7050 3.0785 -3.7199 29 1 2.5380 1.8325 -5.7039 30 1 4.1515 -1.3404 -5.6663 31 1 2.5251 0.8277 -7.2440 32 1 3.8048 -0.2960 -7.9517 33 1 2.4255 -2.3077 -7.2535 34 1 1.1452 -1.1852 -6.5454 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260395708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:05:31 Heat of formation + Delta-G solvation = 67.090477 kcal Electronic energy + Delta-G solvation = -15663.851853 eV Core-core repulsion = 13176.618865 eV Total energy + Delta-G solvation = -2487.232988 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.98192 -37.32720 -35.65697 -32.73974 -31.97450 -30.36725 -28.14504 -25.24115 -24.30229 -22.85899 -21.95445 -21.32467 -19.56355 -17.63526 -16.69903 -16.10012 -15.38529 -15.24119 -14.71731 -14.41511 -13.78998 -13.51516 -13.04440 -12.79798 -12.33479 -12.06188 -11.91966 -11.80176 -11.48798 -11.19257 -10.83923 -10.68451 -10.44232 -10.25950 -9.75701 -9.68979 -9.29940 -9.07360 -8.92095 -8.70804 -6.99131 -6.25412 -4.28294 1.66907 1.93654 3.16031 3.24591 3.28522 3.66502 3.95822 4.23459 4.35658 4.59824 4.87247 4.95597 5.07386 5.19232 5.31157 5.48635 5.63183 5.65489 5.76809 5.85795 6.05170 6.07259 6.11623 6.19389 6.28895 6.43874 6.50607 6.60725 6.72836 7.04533 7.14683 7.37799 7.73077 8.20376 8.52479 8.70924 8.84214 9.33728 10.87107 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.050499 B = 0.005720 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.333943 B = 4894.082179 C = 5183.588814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.244 3.756 3 H 0.041 0.959 4 C -0.533 4.533 5 H 0.081 0.919 6 C 0.078 3.922 7 N -0.890 5.890 8 Si 0.889 3.111 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.266 1.266 12 N -0.692 5.692 13 C 0.419 3.581 14 C -0.250 4.250 15 C -0.034 4.034 16 C -0.256 4.256 17 C 0.205 3.795 18 C -0.101 4.101 19 C -0.174 4.174 20 C -0.164 4.164 21 N -0.552 5.552 22 H 0.048 0.952 23 H 0.034 0.966 24 H 0.057 0.943 25 H 0.268 0.732 26 H 0.401 0.599 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.112 4.304 -16.858 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.140 3.860 3 H 0.059 0.941 4 C -0.571 4.571 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.191 1.191 12 N -0.318 5.318 13 C 0.180 3.820 14 C -0.275 4.275 15 C -0.060 4.060 16 C -0.279 4.279 17 C 0.066 3.934 18 C -0.120 4.120 19 C -0.212 4.212 20 C -0.201 4.201 21 N -0.271 5.271 22 H 0.067 0.933 23 H 0.053 0.947 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.236 0.764 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.976 3.520 -16.322 16.726 hybrid contribution -0.732 1.280 0.359 1.517 sum -1.708 4.800 -15.963 16.757 Atomic orbital electron populations 1.22578 0.99427 1.01507 0.99054 1.19152 0.89919 0.94045 0.82910 0.94140 1.21006 1.33222 1.14625 0.88289 0.90060 1.24848 0.95529 0.96756 0.95476 1.69871 1.44721 1.40024 0.98066 0.86847 0.80627 0.83350 0.77347 1.20224 1.22035 1.19087 1.45075 1.67874 1.12987 1.05866 1.18510 0.88487 0.88562 0.86436 1.21504 1.11566 0.94685 0.99772 1.21185 0.93703 0.99135 0.91927 1.21363 1.11171 0.95548 0.99866 1.19795 0.92568 0.90396 0.90678 1.20746 1.00921 1.02801 0.87560 1.23070 1.03314 0.98017 0.96780 1.22931 0.97194 0.97648 1.02374 1.66851 1.21827 1.39725 0.98711 0.93318 0.94701 0.92377 0.92201 0.76369 0.85074 0.85727 0.85931 0.86469 0.88268 0.88426 0.88484 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 8.89 37.16 0.33 -3.23 16 2 C 0.24 5.61 1.84 -69.08 -0.13 5.49 16 3 H 0.04 0.95 5.51 -51.93 -0.29 0.67 16 4 C -0.53 -14.41 9.31 -34.44 -0.32 -14.73 16 5 H 0.08 2.38 7.98 -52.49 -0.42 1.96 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -26.24 13.96 55.43 0.77 -25.46 16 8 Si 0.89 20.89 24.37 -169.99 -4.14 16.74 16 9 H -0.28 -6.30 6.87 56.52 0.39 -5.91 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -5.92 6.53 56.52 0.37 -5.55 16 12 N -0.69 -14.72 5.24 -55.06 -0.29 -15.01 16 13 C 0.42 8.36 7.63 -155.03 -1.18 7.17 16 14 C -0.25 -4.53 8.83 -39.23 -0.35 -4.88 16 15 C -0.03 -0.51 10.17 -39.32 -0.40 -0.91 16 16 C -0.26 -3.73 9.36 -39.42 -0.37 -4.10 16 17 C 0.21 3.31 6.46 -82.61 -0.53 2.77 16 18 C -0.10 -1.29 6.21 -91.77 -0.57 -1.86 16 19 C -0.17 -1.67 9.80 -26.69 -0.26 -1.94 16 20 C -0.16 -1.76 10.24 -26.69 -0.27 -2.03 16 21 N -0.55 -10.54 10.30 -8.67 -0.09 -10.63 16 22 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 23 H 0.03 0.66 7.66 -51.93 -0.40 0.26 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.40 8.47 8.66 -40.82 -0.35 8.12 16 27 H 0.13 2.40 6.08 -52.48 -0.32 2.08 16 28 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.12 1.43 6.23 -52.49 -0.33 1.11 16 30 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.10 0.90 6.38 -51.93 -0.33 0.57 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 277.40 15.07 4.18 4.18 Total: -1.00 -29.25 277.40 -8.04 -37.29 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -4.32 Total: 9.09 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -4.15 Total: -16.20 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.40 Total: -51.10 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.14 Total: 16.74 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.25 -8.04 -37.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260395708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.377 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds