Wall clock time and date at job start Thu Apr 9 2020 15:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46908 * 111.00173 * 2 1 4 4 H 1.08992 * 109.47165 * 184.21824 * 3 2 1 5 5 C 1.50704 * 109.46567 * 64.22126 * 3 2 1 6 6 H 1.08002 * 119.99562 * 244.23552 * 5 3 2 7 7 C 1.37873 * 120.00147 * 64.23145 * 5 3 2 8 8 N 1.31510 * 120.00099 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99656 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47532 * 60.00252 * 9 7 5 11 11 H 1.48507 * 109.47154 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47282 * 299.99789 * 9 7 5 13 13 C 1.50699 * 109.47038 * 304.22166 * 3 2 1 14 14 C 1.38169 * 120.02602 * 101.72523 * 13 3 2 15 15 C 1.38241 * 120.05336 * 179.69820 * 14 13 3 16 16 C 1.50705 * 119.94435 * 179.97438 * 15 14 13 17 17 C 1.38295 * 120.11243 * 0.02562 * 15 14 13 18 18 C 1.38117 * 120.05380 * 0.02562 * 17 15 14 19 19 C 1.38711 * 120.02699 * 281.44350 * 13 3 2 20 20 O 1.35900 * 120.05382 * 0.25872 * 19 13 3 21 21 C 1.42901 * 116.99577 * 179.97438 * 20 19 13 22 22 H 1.09003 * 109.47128 * 295.53321 * 1 2 3 23 23 H 1.09003 * 109.47483 * 55.53270 * 1 2 3 24 24 H 1.09000 * 109.47275 * 175.53536 * 1 2 3 25 25 H 1.00904 * 110.99625 * 236.05392 * 2 1 3 26 26 H 0.97001 * 119.99597 * 179.97438 * 8 7 5 27 27 H 1.07994 * 119.97322 * 359.72077 * 14 13 3 28 28 H 1.08996 * 109.46657 * 90.00113 * 16 15 14 29 29 H 1.09003 * 109.47010 * 209.99711 * 16 15 14 30 30 H 1.08998 * 109.46928 * 330.00193 * 16 15 14 31 31 H 1.07999 * 119.96801 * 179.97438 * 17 15 14 32 32 H 1.08001 * 120.02714 * 179.97438 * 18 17 15 33 33 H 1.08999 * 109.46888 * 299.99588 * 21 20 19 34 34 H 1.09003 * 109.47265 * 60.00200 * 21 20 19 35 35 H 1.08999 * 109.46553 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 3.0824 1.3434 -0.0756 5 6 1.5986 2.0618 1.2795 6 1 0.9406 2.9177 1.2495 7 6 2.0753 1.6006 2.4882 8 7 2.8768 0.5586 2.5246 9 14 1.5838 2.4568 4.0740 10 1 0.1077 2.4054 4.2275 11 1 2.2257 1.7729 5.2253 12 1 2.0279 3.8732 4.0301 13 6 1.4295 2.1268 -1.1748 14 6 0.3904 3.0181 -0.9881 15 6 -0.1251 3.7159 -2.0644 16 6 -1.2589 4.6870 -1.8580 17 6 0.3973 3.5236 -3.3304 18 6 1.4353 2.6330 -3.5224 19 6 1.9552 1.9322 -2.4436 20 8 2.9776 1.0564 -2.6297 21 6 3.4686 0.9063 -3.9633 22 1 -0.3633 0.4430 0.9273 23 1 -0.3634 0.5816 -0.8473 24 1 -0.3634 -1.0245 -0.0800 25 1 1.8305 -0.5260 -0.7815 26 1 3.2125 0.2345 3.3750 27 1 -0.0192 3.1700 -0.0005 28 1 -0.8552 5.6763 -1.6428 29 1 -1.8679 4.7316 -2.7609 30 1 -1.8734 4.3554 -1.0211 31 1 -0.0075 4.0697 -4.1696 32 1 1.8426 2.4828 -4.5113 33 1 2.6632 0.5580 -4.6099 34 1 3.8359 1.8666 -4.3255 35 1 4.2809 0.1796 -3.9717 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259408557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:07:38 Heat of formation + Delta-G solvation = -6.922035 kcal Electronic energy + Delta-G solvation = -17071.230674 eV Core-core repulsion = 14455.758122 eV Total energy + Delta-G solvation = -2615.472552 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.78206 -37.23958 -35.36163 -31.88451 -31.35484 -30.35388 -27.56383 -26.58150 -25.48555 -24.32070 -22.28792 -20.98878 -19.36742 -17.47468 -16.30302 -15.50936 -15.30445 -14.80531 -14.38231 -14.04969 -13.79643 -13.38414 -13.30313 -12.95659 -12.78570 -12.06054 -11.80015 -11.63040 -11.60648 -11.18718 -11.00689 -10.81234 -10.65475 -10.42400 -10.31322 -10.15545 -9.62151 -8.86320 -8.34336 -8.09886 -7.42134 -6.76354 -5.81476 -3.92774 1.99291 2.01624 3.38627 3.43645 3.45322 3.80264 4.35755 4.52949 5.18762 5.32199 5.37902 5.40507 5.44806 5.49149 5.65652 5.69431 5.92213 5.92945 6.08600 6.20229 6.28612 6.40465 6.52912 6.63395 6.76979 6.91005 6.94446 7.13472 7.24200 7.47297 7.72086 7.97037 8.00638 8.28811 8.66741 8.97951 9.23893 9.74107 11.25054 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.022486 B = 0.009689 C = 0.007693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.898880 B = 2889.098199 C = 3638.717076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.647 5.647 3 C 0.259 3.741 4 H 0.054 0.946 5 C -0.531 4.531 6 H 0.059 0.941 7 C 0.084 3.916 8 N -0.851 5.851 9 Si 0.880 3.120 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C -0.103 4.103 14 C -0.065 4.065 15 C -0.137 4.137 16 C -0.103 4.103 17 C -0.104 4.104 18 C -0.215 4.215 19 C 0.108 3.892 20 O -0.307 6.307 21 C 0.031 3.969 22 H 0.065 0.935 23 H -0.001 1.001 24 H 0.032 0.968 25 H 0.303 0.697 26 H 0.256 0.744 27 H 0.140 0.860 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 3.371 -11.402 12.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.274 5.274 3 C 0.152 3.848 4 H 0.072 0.928 5 C -0.570 4.570 6 H 0.077 0.923 7 C -0.122 4.122 8 N -0.486 5.486 9 Si 0.708 3.292 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.106 4.106 14 C -0.084 4.084 15 C -0.137 4.137 16 C -0.160 4.160 17 C -0.123 4.123 18 C -0.234 4.234 19 C 0.063 3.937 20 O -0.221 6.221 21 C -0.065 4.065 22 H 0.084 0.916 23 H 0.018 0.982 24 H 0.051 0.949 25 H 0.118 0.882 26 H 0.066 0.934 27 H 0.158 0.842 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.289 3.014 -10.431 11.345 hybrid contribution -0.457 0.801 -0.444 1.023 sum -3.745 3.815 -10.875 12.118 Atomic orbital electron populations 1.21936 0.90887 0.97754 0.99929 1.60987 1.05187 1.15415 1.45784 1.18123 0.95295 0.83301 0.88104 0.92842 1.20986 1.31487 1.13893 0.90594 0.92308 1.24919 0.94567 0.94333 0.98419 1.70062 1.30868 1.22601 1.25042 0.86894 0.78762 0.79777 0.83803 1.20388 1.21400 1.20414 1.20992 0.96416 0.98872 0.94299 1.21222 0.94842 0.93630 0.98666 1.19877 0.99626 1.00545 0.93668 1.20649 0.95941 0.97790 1.01628 1.20551 0.96885 0.98545 0.96312 1.21033 1.01948 1.02711 0.97671 1.19106 0.89009 0.91368 0.94194 1.86168 1.48110 1.58823 1.28968 1.22929 0.98961 1.01431 0.83185 0.91607 0.98226 0.94933 0.88170 0.93425 0.84208 0.91996 0.92552 0.91887 0.87126 0.86642 0.93459 0.93373 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.00 9.98 60.06 0.60 1.60 16 2 N -0.65 -15.95 6.35 -116.49 -0.74 -16.68 16 3 C 0.26 6.61 2.18 -70.01 -0.15 6.46 16 4 H 0.05 1.54 7.90 -51.93 -0.41 1.13 16 5 C -0.53 -14.42 7.04 -34.44 -0.24 -14.67 16 6 H 0.06 1.55 5.29 -52.49 -0.28 1.27 16 7 C 0.08 2.34 5.41 -17.82 -0.10 2.25 16 8 N -0.85 -24.97 12.96 55.43 0.72 -24.25 16 9 Si 0.88 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 C -0.10 -2.28 4.00 -104.47 -0.42 -2.70 16 14 C -0.07 -1.33 7.74 -39.61 -0.31 -1.64 16 15 C -0.14 -2.37 5.88 -104.60 -0.62 -2.99 16 16 C -0.10 -1.42 10.01 36.01 0.36 -1.06 16 17 C -0.10 -1.69 9.69 -39.60 -0.38 -2.08 16 18 C -0.21 -3.63 9.04 -39.44 -0.36 -3.99 16 19 C 0.11 2.15 6.66 -39.22 -0.26 1.89 16 20 O -0.31 -5.83 9.64 -19.43 -0.19 -6.02 16 21 C 0.03 0.40 9.81 101.05 0.99 1.39 16 22 H 0.07 1.57 7.37 -51.93 -0.38 1.18 16 23 H 0.00 -0.01 6.23 -51.93 -0.32 -0.34 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.30 7.07 8.77 -39.29 -0.34 6.72 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.14 2.98 5.69 -52.49 -0.30 2.68 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.12 1.62 6.30 -52.49 -0.33 1.29 16 33 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 34 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 287.08 15.07 4.33 4.33 Total: -1.00 -30.30 287.08 -6.61 -36.92 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -4.83 Total: 4.97 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -0.88 Total: -15.53 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: -0.02 Total: -40.94 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.19 Total: -6.02 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.30 -6.61 -36.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259408557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.995 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds