Wall clock time and date at job start Thu Apr 9 2020 15:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52989 * 109.47232 * 2 1 4 4 H 1.09000 * 109.47430 * 55.00244 * 3 2 1 5 5 N 1.46895 * 109.47360 * 294.99806 * 3 2 1 6 6 C 1.46899 * 111.00055 * 296.54383 * 5 3 2 7 7 C 1.50706 * 109.47133 * 174.99883 * 3 2 1 8 8 C 1.38298 * 119.92700 * 340.01109 * 7 3 2 9 9 C 1.38104 * 120.06855 * 179.72799 * 8 7 3 10 10 C 1.38884 * 119.92462 * 0.54416 * 9 8 7 11 11 O 1.35753 * 120.06412 * 179.75052 * 10 9 8 12 12 C 1.34838 * 116.99630 * 174.03458 * 11 10 9 13 13 H 1.07994 * 120.00080 * 5.09854 * 12 11 10 14 14 C 1.38652 * 119.99751 * 185.09544 * 12 11 10 15 15 N 1.31561 * 119.99991 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99990 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47032 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46997 * 120.00359 * 16 14 12 19 19 H 1.48500 * 109.47248 * 240.00285 * 16 14 12 20 20 C 1.38883 * 119.86499 * 359.72831 * 10 9 8 21 21 C 1.38090 * 119.92947 * 0.02562 * 20 10 9 22 22 H 1.09001 * 109.47175 * 300.00031 * 1 2 3 23 23 H 1.09003 * 109.47229 * 59.99984 * 1 2 3 24 24 H 1.09001 * 109.47610 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47213 * 239.99597 * 2 1 3 26 26 H 1.09007 * 109.46515 * 119.99956 * 2 1 3 27 27 H 1.00898 * 111.00310 * 60.49898 * 5 3 2 28 28 H 1.09005 * 109.47302 * 185.07010 * 6 5 3 29 29 H 1.09004 * 109.47103 * 305.06922 * 6 5 3 30 30 H 1.09003 * 109.47129 * 65.06353 * 6 5 3 31 31 H 1.08003 * 119.96922 * 0.02562 * 8 7 3 32 32 H 1.07995 * 120.03662 * 180.27297 * 9 8 7 33 33 H 0.96999 * 119.99556 * 179.97438 * 15 14 12 34 34 H 1.07997 * 120.03217 * 179.97438 * 20 10 9 35 35 H 1.08003 * 119.96827 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6515 2.0992 -1.2552 6 6 2.2865 1.4479 -2.4087 7 6 3.5419 1.4442 0.1239 8 6 4.1945 0.3310 0.6215 9 6 5.5712 0.3273 0.7310 10 6 6.2994 1.4474 0.3513 11 8 7.6524 1.4487 0.4625 12 6 8.3065 2.5166 -0.0373 13 1 7.7507 3.3573 -0.4254 14 6 9.6928 2.5354 -0.0528 15 7 10.3699 1.5112 0.4196 16 14 10.5991 4.0145 -0.7459 17 1 9.6150 5.0248 -1.2107 18 1 11.4568 4.6091 0.3105 19 1 11.4459 3.5857 -1.8879 20 6 5.6406 2.5658 -0.1427 21 6 4.2643 2.5612 -0.2545 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5139 0.8901 27 1 0.6479 2.1180 -1.3579 28 1 2.0547 2.0074 -3.3150 29 1 3.3665 1.4235 -2.2630 30 1 1.9097 0.4295 -2.5039 31 1 3.6274 -0.5382 0.9202 32 1 6.0806 -0.5438 1.1155 33 1 11.3397 1.5242 0.4083 34 1 6.2042 3.4383 -0.4383 35 1 3.7514 3.4305 -0.6390 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037708708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:08:29 Heat of formation + Delta-G solvation = -25.133558 kcal Electronic energy + Delta-G solvation = -16368.456112 eV Core-core repulsion = 13752.193849 eV Total energy + Delta-G solvation = -2616.262263 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.98651 -39.39910 -37.04293 -34.26616 -33.04073 -31.58831 -30.89789 -27.71463 -26.91716 -25.27844 -23.65045 -22.62493 -20.86611 -19.64689 -18.82005 -17.31130 -16.64817 -16.35971 -16.10976 -15.71893 -15.49342 -15.07262 -14.84442 -14.38079 -14.12811 -13.75915 -13.60828 -13.55842 -13.08668 -12.83735 -12.59201 -12.49700 -12.30015 -12.11144 -11.95484 -11.67648 -11.57897 -11.14223 -10.77983 -9.74575 -9.26598 -8.87173 -8.47245 -6.15229 0.61839 0.71650 1.34708 1.43016 1.53182 2.17820 2.82502 3.16034 3.43403 3.54644 3.88241 4.06072 4.16965 4.22918 4.31692 4.53553 4.58212 4.63812 4.69050 4.74450 4.81836 4.96477 5.07870 5.12415 5.16148 5.20105 5.30583 5.33365 5.43329 5.59678 5.72277 5.77863 6.03600 6.16949 6.24136 6.65337 6.97785 7.79125 8.76354 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.048098 B = 0.005396 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.002040 B = 5188.165681 C = 5567.346990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.159 4.159 3 C 0.144 3.856 4 H 0.093 0.907 5 N -0.685 5.685 6 C 0.025 3.975 7 C -0.154 4.154 8 C -0.067 4.067 9 C -0.206 4.206 10 C 0.112 3.888 11 O -0.234 6.234 12 C -0.413 4.413 13 H 0.099 0.901 14 C -0.023 4.023 15 N -0.921 5.921 16 Si 1.019 2.981 17 H -0.253 1.253 18 H -0.267 1.267 19 H -0.268 1.268 20 C -0.246 4.246 21 C -0.045 4.045 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.352 0.648 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.030 0.970 31 H 0.150 0.850 32 H 0.112 0.888 33 H 0.272 0.728 34 H 0.114 0.886 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.414 0.135 -3.122 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.198 4.198 3 C 0.034 3.966 4 H 0.111 0.889 5 N -0.317 5.317 6 C -0.124 4.124 7 C -0.155 4.155 8 C -0.085 4.085 9 C -0.226 4.226 10 C 0.062 3.938 11 O -0.141 6.141 12 C -0.489 4.489 13 H 0.117 0.883 14 C -0.220 4.220 15 N -0.560 5.560 16 Si 0.838 3.162 17 H -0.176 1.176 18 H -0.192 1.192 19 H -0.192 1.192 20 C -0.265 4.265 21 C -0.064 4.064 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.173 0.827 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.167 0.833 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.599 0.414 -2.959 17.851 hybrid contribution 0.601 -0.410 -0.217 0.759 sum -16.998 0.004 -3.176 17.292 Atomic orbital electron populations 1.21755 0.94070 1.02391 1.02280 1.22289 0.97325 0.97467 1.02683 1.20272 0.89615 0.93613 0.93058 0.88870 1.60496 1.14375 1.55440 1.01403 1.22187 0.99532 0.97168 0.93527 1.19676 0.95851 0.94302 1.05649 1.21006 0.91711 0.98570 0.97211 1.20450 0.94828 0.97114 1.10171 1.19953 0.84220 0.95053 0.94607 1.83939 1.14895 1.43804 1.71462 1.21848 0.90074 0.95912 1.41086 0.88321 1.26583 0.96093 1.02144 0.97210 1.70193 1.08001 1.32307 1.45486 0.84529 0.77969 0.75695 0.78002 1.17609 1.19224 1.19250 1.21267 0.96158 0.99025 1.10039 1.20827 0.91369 0.98457 0.95722 0.91837 0.92335 0.92003 0.92258 0.90841 0.82726 0.90802 0.93627 0.95145 0.83285 0.87012 0.91851 0.86798 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.68 71.98 0.70 -1.34 16 2 C -0.16 -2.99 4.44 30.59 0.14 -2.85 16 3 C 0.14 3.30 2.96 44.17 0.13 3.43 16 4 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 5 N -0.69 -14.51 6.13 -518.54 -3.18 -17.69 16 6 C 0.03 0.58 9.87 127.69 1.26 1.84 16 7 C -0.15 -4.89 4.32 -19.83 -0.09 -4.97 16 8 C -0.07 -2.27 9.11 22.25 0.20 -2.07 16 9 C -0.21 -9.01 9.99 22.39 0.22 -8.78 16 10 C 0.11 5.74 6.65 22.58 0.15 5.89 16 11 O -0.23 -14.48 9.76 -22.84 -0.22 -14.70 16 12 C -0.41 -24.70 9.49 67.92 0.64 -24.05 16 13 H 0.10 5.48 5.21 -2.91 -0.02 5.46 16 14 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 15 N -0.92 -57.46 13.67 21.61 0.30 -57.17 16 16 Si 1.02 43.75 29.55 68.60 2.03 45.77 16 17 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 C -0.25 -11.18 9.17 22.39 0.21 -10.98 16 21 C -0.05 -1.66 8.18 22.25 0.18 -1.48 16 22 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.06 0.72 6.78 -2.39 -0.02 0.70 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 1.23 6.35 -2.39 -0.02 1.21 16 26 H 0.07 1.38 6.35 -2.38 -0.02 1.36 16 27 H 0.35 5.67 7.23 -89.70 -0.65 5.02 16 28 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.04 1.33 6.06 -2.38 -0.01 1.31 16 30 H 0.03 0.62 6.54 -2.39 -0.02 0.61 16 31 H 0.15 3.98 5.85 -2.91 -0.02 3.96 16 32 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 33 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 34 H 0.11 5.33 5.64 -2.91 -0.02 5.32 16 35 H 0.13 4.41 7.72 -2.91 -0.02 4.39 16 Total: -1.00 -69.68 282.45 3.59 -66.10 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.45 Total: 23.93 kcal Atomic # 6 Polarization: -50.45 SS G_CDS: 4.21 Total: -46.24 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -2.88 Total: -74.86 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.22 Total: -14.70 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -69.68 3.59 -66.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037708708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.963 kcal (2) G-P(sol) polarization free energy of solvation -69.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds