Wall clock time and date at job start Thu Apr 9 2020 15:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46942 * 2 1 4 4 H 1.08996 * 109.47147 * 175.53364 * 3 2 1 5 5 C 1.50705 * 109.47473 * 55.52969 * 3 2 1 6 6 H 1.07991 * 120.00153 * 240.00847 * 5 3 2 7 7 C 1.37872 * 119.99500 * 59.99810 * 5 3 2 8 8 N 1.31515 * 119.99961 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 120.00271 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.46761 * 269.99450 * 9 7 5 11 11 H 1.48498 * 109.47070 * 29.99675 * 9 7 5 12 12 H 1.48501 * 109.47170 * 149.99851 * 9 7 5 13 13 N 1.46907 * 109.47001 * 295.53128 * 3 2 1 14 14 C 1.46891 * 111.00055 * 273.92102 * 13 3 2 15 15 C 1.53004 * 109.47452 * 176.16571 * 14 13 3 16 16 C 1.52993 * 117.49607 * 243.75060 * 15 14 13 17 17 C 1.52997 * 138.58738 * 121.61449 * 16 15 14 18 18 C 1.52987 * 138.59206 * 23.40057 * 16 15 14 19 19 C 1.52986 * 117.50311 * 175.08951 * 15 14 13 20 20 C 1.53003 * 138.58648 * 336.59097 * 19 15 14 21 21 C 1.52992 * 138.58565 * 238.38687 * 19 15 14 22 22 H 1.09000 * 109.46777 * 65.26105 * 1 2 3 23 23 H 1.08997 * 109.46624 * 185.26196 * 1 2 3 24 24 H 1.08996 * 109.47010 * 305.26003 * 1 2 3 25 25 H 1.08990 * 109.47524 * 240.00175 * 2 1 3 26 26 H 1.08999 * 109.46956 * 119.99486 * 2 1 3 27 27 H 0.96996 * 120.00263 * 180.02562 * 8 7 5 28 28 H 1.00903 * 110.99719 * 37.88011 * 13 3 2 29 29 H 1.09002 * 109.47572 * 296.16601 * 14 13 3 30 30 H 1.09000 * 109.47188 * 56.16196 * 14 13 3 31 31 H 1.08997 * 115.54710 * 29.41060 * 15 14 13 32 32 H 1.09001 * 117.49709 * 336.59595 * 17 16 15 33 33 H 1.09007 * 117.49754 * 121.61075 * 17 16 15 34 34 H 1.09003 * 117.50038 * 238.37923 * 18 16 15 35 35 H 1.09008 * 117.49960 * 23.37766 * 18 16 15 36 36 H 1.09005 * 117.49551 * 336.60364 * 20 19 15 37 37 H 1.08994 * 117.49871 * 121.61719 * 20 19 15 38 38 H 1.09006 * 117.49969 * 238.37460 * 21 19 15 39 39 H 1.08994 * 117.50281 * 23.37056 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1270 1.4436 0.0800 5 6 1.4493 2.1843 1.1714 6 1 0.8381 3.0588 1.0041 7 6 1.6891 1.7462 2.4565 8 7 1.1732 2.3931 3.4787 9 14 2.7466 0.2338 2.7457 10 1 1.8862 -0.9766 2.7593 11 1 3.7499 0.1158 1.6573 12 1 3.4443 0.3597 4.0506 13 7 1.6404 2.1032 -1.2498 14 6 2.6190 1.8496 -2.3155 15 6 2.1224 2.4712 -3.6225 16 6 1.8153 1.5234 -4.7835 17 6 0.6325 1.1540 -5.6810 18 6 1.4481 0.0540 -4.9988 19 6 3.0581 2.4155 -4.8315 20 6 4.5552 2.2838 -5.1188 21 6 3.7391 3.3837 -5.8009 22 1 -0.3633 0.4301 -0.9334 23 1 -0.3632 -1.0233 0.0942 24 1 -0.3633 0.5932 0.8391 25 1 1.8934 -0.5137 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.3421 2.0852 4.3828 28 1 0.7156 1.8144 -1.5317 29 1 3.5764 2.2934 -2.0429 30 1 2.7415 0.7746 -2.4480 31 1 1.4928 3.3542 -3.5135 32 1 -0.3695 1.3484 -5.2985 33 1 0.7581 1.2803 -6.7564 34 1 2.1103 -0.5437 -5.6254 35 1 0.9830 -0.4757 -4.1673 36 1 5.2470 2.5849 -4.3321 37 1 4.8778 1.4426 -5.7322 38 1 3.5249 3.2660 -6.8632 39 1 3.8937 4.4084 -5.4633 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716606708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:07:43 Heat of formation + Delta-G solvation = 92.911144 kcal Electronic energy + Delta-G solvation = -16750.065228 eV Core-core repulsion = 14274.754862 eV Total energy + Delta-G solvation = -2475.310366 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.98393 -36.65996 -35.07286 -32.86346 -31.54859 -29.73150 -26.89853 -23.99729 -23.16913 -22.58300 -22.14115 -19.54492 -19.20261 -18.29241 -16.37790 -15.44144 -15.36823 -15.04640 -14.85089 -14.64922 -13.51988 -13.28835 -12.99653 -12.75057 -12.35090 -12.15730 -11.75026 -11.59856 -11.51781 -11.19845 -10.96071 -10.77273 -10.62255 -10.46745 -10.13610 -9.85573 -9.62040 -9.57988 -9.48423 -9.28595 -9.08275 -8.50923 -7.36181 -6.01600 -3.97093 3.27725 3.36721 3.37546 3.39678 3.60359 4.11581 4.20129 4.40148 4.43346 4.84110 5.16554 5.28173 5.30589 5.38353 5.46031 5.55597 5.57906 5.67627 5.70843 5.79147 5.85645 5.91171 5.94195 5.97461 6.02140 6.08945 6.10671 6.19893 6.27346 6.48305 6.58325 6.81640 6.85869 7.02928 7.29080 7.76427 7.96193 8.38907 8.74053 9.10228 9.61725 11.11896 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.032142 B = 0.006117 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.935868 B = 4576.576110 C = 4866.800116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.158 4.158 3 C 0.186 3.814 4 H 0.032 0.968 5 C -0.489 4.489 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.270 1.270 12 H -0.297 1.297 13 N -0.670 5.670 14 C 0.087 3.913 15 C -0.034 4.034 16 C -0.178 4.178 17 C -0.133 4.133 18 C -0.133 4.133 19 C -0.174 4.174 20 C -0.134 4.134 21 C -0.133 4.133 22 H 0.040 0.960 23 H 0.030 0.970 24 H 0.081 0.919 25 H 0.032 0.968 26 H 0.048 0.952 27 H 0.262 0.738 28 H 0.332 0.668 29 H 0.070 0.930 30 H 0.023 0.977 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.574 -3.433 -17.398 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.197 4.197 3 C 0.077 3.923 4 H 0.050 0.950 5 C -0.527 4.527 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.541 5.541 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.196 1.196 12 H -0.225 1.225 13 N -0.301 5.301 14 C -0.043 4.043 15 C -0.052 4.052 16 C -0.178 4.178 17 C -0.170 4.170 18 C -0.170 4.170 19 C -0.175 4.175 20 C -0.170 4.170 21 C -0.170 4.170 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.100 0.900 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.150 0.850 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.839 -2.812 -17.016 17.479 hybrid contribution 0.434 -1.945 0.018 1.992 sum 3.273 -4.756 -16.999 17.953 Atomic orbital electron populations 1.21643 0.95799 0.99587 1.02427 1.22481 0.97250 1.01112 0.98842 1.19687 0.95836 0.88150 0.88657 0.95048 1.20909 1.31139 1.12682 0.87988 0.90021 1.24891 0.95580 0.96606 0.96143 1.69880 1.45253 1.40324 0.98614 0.86977 0.81183 0.83945 0.76812 1.20675 1.19574 1.22458 1.60678 1.04134 1.62516 1.02784 1.21486 0.96895 0.96874 0.89039 1.22033 0.97508 0.98136 0.87551 1.21378 0.96835 0.96396 1.03224 1.22670 0.94908 1.01875 0.97557 1.22635 1.02177 0.89708 1.02491 1.21263 0.91074 1.03102 1.02045 1.22646 0.91462 1.00404 1.02513 1.22668 1.01965 0.95352 0.97000 0.94085 0.95123 0.90036 0.94956 0.93360 0.92762 0.84988 0.91183 0.95843 0.86772 0.88403 0.89048 0.89050 0.88453 0.88337 0.89022 0.89020 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.40 37.16 0.35 -2.41 16 2 C -0.16 -3.41 5.23 -26.73 -0.14 -3.55 16 3 C 0.19 4.38 1.92 -68.86 -0.13 4.24 16 4 H 0.03 0.78 6.89 -51.93 -0.36 0.43 16 5 C -0.49 -13.59 7.86 -34.44 -0.27 -13.86 16 6 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 7 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 8 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 9 Si 0.88 22.01 24.33 -169.99 -4.14 17.88 16 10 H -0.28 -6.83 6.91 56.52 0.39 -6.44 16 11 H -0.27 -6.54 6.53 56.52 0.37 -6.17 16 12 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 13 N -0.67 -13.76 6.26 -107.95 -0.68 -14.43 16 14 C 0.09 1.52 5.76 -3.83 -0.02 1.50 16 15 C -0.03 -0.52 5.91 -90.63 -0.54 -1.05 16 16 C -0.18 -2.41 5.28 -154.49 -0.82 -3.22 16 17 C -0.13 -1.50 10.53 -26.73 -0.28 -1.79 16 18 C -0.13 -1.60 10.53 -26.74 -0.28 -1.88 16 19 C -0.17 -2.33 5.40 -154.48 -0.83 -3.16 16 20 C -0.13 -1.53 10.53 -26.73 -0.28 -1.81 16 21 C -0.13 -1.45 10.53 -26.74 -0.28 -1.74 16 22 H 0.04 0.74 6.61 -51.93 -0.34 0.39 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 1.87 6.89 -51.93 -0.36 1.52 16 25 H 0.03 0.63 7.39 -51.93 -0.38 0.24 16 26 H 0.05 1.11 3.40 -51.93 -0.18 0.94 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.33 6.47 6.55 -39.29 -0.26 6.21 16 29 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 30 H 0.02 0.42 7.19 -51.93 -0.37 0.04 16 31 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 310.25 15.07 4.68 4.68 Total: -1.00 -29.56 310.25 -9.49 -39.05 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.50 Total: 6.41 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -3.62 Total: -26.85 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.10 Total: -41.16 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.88 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.56 -9.49 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716606708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.960 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds