Wall clock time and date at job start Thu Apr 9 2020 15:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38282 * 119.99833 * 2 1 4 4 C 1.38215 * 120.14509 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.92326 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47448 * 4.26425 * 5 4 3 7 7 C 1.53003 * 109.47186 * 244.26005 * 5 4 3 8 8 C 1.50708 * 109.46908 * 124.26411 * 5 4 3 9 9 H 1.08000 * 119.99426 * 0.04016 * 8 5 4 10 10 C 1.37874 * 120.00026 * 179.76679 * 8 5 4 11 11 N 1.31514 * 119.99946 * 0.27394 * 10 8 5 12 12 Si 1.86798 * 119.99891 * 180.27763 * 10 8 5 13 13 H 1.48494 * 109.47225 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47235 * 120.00140 * 12 10 8 15 15 H 1.48505 * 109.46876 * 239.99570 * 12 10 8 16 16 C 1.38277 * 120.14466 * 0.29572 * 4 3 2 17 17 C 1.38530 * 120.00300 * 359.45193 * 16 4 3 18 18 O 1.35993 * 120.07505 * 180.27608 * 17 16 4 19 19 C 1.38521 * 119.99930 * 180.02562 * 2 1 3 20 20 O 1.35988 * 120.07576 * 0.02562 * 19 2 1 21 21 H 1.09005 * 109.47422 * 90.00476 * 1 2 3 22 22 H 1.09007 * 109.47448 * 210.00183 * 1 2 3 23 23 H 1.08999 * 109.47509 * 330.00304 * 1 2 3 24 24 H 1.08000 * 119.92871 * 0.02562 * 3 2 1 25 25 H 1.09007 * 109.47037 * 179.97438 * 6 5 4 26 26 H 1.08998 * 109.46986 * 299.99866 * 6 5 4 27 27 H 1.09000 * 109.46911 * 59.99965 * 6 5 4 28 28 H 1.08995 * 109.47445 * 300.00658 * 7 5 4 29 29 H 1.08998 * 109.46493 * 60.00651 * 7 5 4 30 30 H 1.09000 * 109.47119 * 180.02562 * 7 5 4 31 31 H 0.97001 * 120.00232 * 180.02562 * 11 10 8 32 32 H 1.07999 * 120.00171 * 179.72392 * 16 4 3 33 33 H 0.96701 * 113.99302 * 270.24912 * 18 17 16 34 34 H 0.96700 * 114.00721 * 89.99915 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1976 0.0000 4 6 3.5805 1.2011 0.0005 5 6 4.3289 2.5091 0.0011 6 6 3.3336 3.6662 0.1082 7 6 5.1264 2.6410 -1.2979 8 6 5.2722 2.5476 1.1758 9 1 5.3250 1.7084 1.8536 10 6 6.0720 3.6516 1.3819 11 7 6.0077 4.6734 0.5564 12 14 7.2468 3.6960 2.8335 13 1 7.1284 2.4327 3.6049 14 1 8.6391 3.8460 2.3391 15 1 6.9066 4.8449 3.7106 16 6 4.2780 0.0071 -0.0051 17 6 3.5915 -1.1961 0.0002 18 8 4.2760 -2.3712 0.0003 19 6 2.1996 -1.1996 -0.0005 20 8 1.5212 -2.3782 -0.0016 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 1.6572 2.1322 0.0004 25 1 3.8750 4.6123 0.1091 26 1 2.6513 3.6384 -0.7413 27 1 2.7655 3.5722 1.0337 28 1 5.8354 1.8167 -1.3743 29 1 4.4441 2.6132 -2.1475 30 1 5.6681 3.5869 -1.2973 31 1 6.5706 5.4500 0.7012 32 1 5.3579 0.0126 -0.0092 33 1 4.4740 -2.7111 -0.8831 34 1 1.3252 -2.7186 -0.8852 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260227607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:08:59 Heat of formation + Delta-G solvation = -74.120546 kcal Electronic energy + Delta-G solvation = -17017.763420 eV Core-core repulsion = 14301.658260 eV Total energy + Delta-G solvation = -2716.105160 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.86768 -37.15073 -36.65862 -34.59561 -31.87083 -30.80194 -27.85721 -26.76326 -25.45932 -25.09870 -22.25402 -21.15525 -19.03892 -18.17040 -17.06796 -16.03691 -15.60155 -15.42571 -14.74226 -14.21342 -13.69527 -13.19288 -12.92143 -12.75275 -12.39921 -12.04133 -11.75374 -11.56343 -11.29623 -11.18458 -10.91902 -10.85485 -10.57752 -10.45095 -10.19271 -9.88160 -9.65781 -9.30661 -8.88009 -8.38527 -8.05008 -7.68075 -6.01846 -4.11719 1.77242 1.83111 3.27207 3.35949 3.41757 4.12354 4.41358 4.52291 4.56419 5.23993 5.28716 5.49072 5.78028 5.86645 5.95646 6.07829 6.14489 6.34775 6.48816 6.66837 6.76559 6.81183 6.90001 6.94332 7.01543 7.22997 7.34068 7.39754 7.59334 7.70726 7.73914 8.00765 8.13975 8.19876 8.39096 8.88955 9.53872 10.99210 Molecular weight = 236.12amu Principal moments of inertia in cm(-1) A = 0.029928 B = 0.007782 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.365793 B = 3597.346651 C = 4015.451064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.104 4.104 3 C -0.127 4.127 4 C -0.014 4.014 5 C 0.094 3.906 6 C -0.133 4.133 7 C -0.126 4.126 8 C -0.500 4.500 9 H 0.058 0.942 10 C 0.065 3.935 11 N -0.886 5.886 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.126 4.126 17 C 0.074 3.926 18 O -0.492 6.492 19 C 0.044 3.956 20 O -0.489 6.489 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.129 0.871 25 H 0.087 0.913 26 H 0.013 0.987 27 H 0.029 0.971 28 H 0.027 0.973 29 H 0.009 0.991 30 H 0.088 0.912 31 H 0.260 0.740 32 H 0.132 0.868 33 H 0.377 0.623 34 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.929 -7.609 -5.124 11.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.104 4.104 3 C -0.145 4.145 4 C -0.014 4.014 5 C 0.094 3.906 6 C -0.191 4.191 7 C -0.184 4.184 8 C -0.538 4.538 9 H 0.076 0.924 10 C -0.136 4.136 11 N -0.525 5.525 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.144 4.144 17 C 0.030 3.970 18 O -0.301 6.301 19 C 0.000 4.000 20 O -0.297 6.297 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.147 0.853 25 H 0.105 0.895 26 H 0.031 0.969 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.029 0.971 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.150 0.850 33 H 0.231 0.769 34 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.845 -7.313 -3.902 10.750 hybrid contribution 0.730 -0.143 -0.180 0.765 sum -6.115 -7.456 -4.082 10.472 Atomic orbital electron populations 1.20618 0.91285 1.02719 1.01652 1.20036 0.96108 0.92323 1.01965 1.21150 0.94388 0.96837 1.02089 1.20593 0.92858 0.96772 0.91173 1.17294 0.92140 0.86164 0.95033 1.21904 0.97441 1.03015 0.96737 1.21807 0.98687 1.03165 0.94739 1.21122 1.20548 1.02469 1.09695 0.92379 1.24898 0.96890 0.95490 0.96286 1.69813 1.39753 1.06339 1.36604 0.86539 0.80756 0.78107 0.82695 1.19743 1.21011 1.21017 1.21297 1.01012 0.90536 1.01599 1.18817 0.88960 0.85637 1.03621 1.84907 1.76081 1.36692 1.32387 1.18413 0.88947 0.84985 1.07700 1.84893 1.76394 1.36301 1.32132 0.91871 0.91417 0.91628 0.85293 0.89463 0.96851 0.95178 0.95359 0.97147 0.89317 0.93014 0.85000 0.76891 0.77416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.79 36.00 0.35 -1.07 16 2 C -0.10 -1.78 5.89 -104.50 -0.62 -2.39 16 3 C -0.13 -2.42 8.64 -39.57 -0.34 -2.76 16 4 C -0.01 -0.29 4.72 -104.62 -0.49 -0.79 16 5 C 0.09 2.22 0.58 -156.81 -0.09 2.13 16 6 C -0.13 -3.07 6.92 37.16 0.26 -2.81 16 7 C -0.13 -2.92 8.10 37.16 0.30 -2.61 16 8 C -0.50 -13.21 7.59 -34.44 -0.26 -13.47 16 9 H 0.06 1.59 7.48 -52.49 -0.39 1.19 16 10 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 11 N -0.89 -23.71 9.35 55.43 0.52 -23.20 16 12 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 C -0.13 -2.58 8.54 -39.46 -0.34 -2.92 16 17 C 0.07 1.38 6.72 -39.12 -0.26 1.11 16 18 O -0.49 -8.13 13.29 -34.20 -0.45 -8.58 16 19 C 0.04 0.77 6.69 -39.12 -0.26 0.51 16 20 O -0.49 -7.34 12.33 -34.18 -0.42 -7.76 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.07 0.88 7.53 -51.93 -0.39 0.49 16 23 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 24 H 0.13 2.35 5.88 -52.49 -0.31 2.04 16 25 H 0.09 2.20 6.08 -51.92 -0.32 1.88 16 26 H 0.01 0.26 7.31 -51.93 -0.38 -0.12 16 27 H 0.03 0.67 7.71 -51.93 -0.40 0.27 16 28 H 0.03 0.62 7.63 -51.93 -0.40 0.23 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 2.23 6.06 -51.93 -0.31 1.92 16 31 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.13 2.77 7.71 -52.49 -0.40 2.36 16 33 H 0.38 4.10 9.06 45.56 0.41 4.51 16 34 H 0.37 3.63 9.06 45.56 0.41 4.04 16 LS Contribution 279.35 15.07 4.21 4.21 Total: -1.00 -29.87 279.35 -5.89 -35.76 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -2.88 Total: 7.07 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -1.85 Total: -23.44 kcal Atomic # 7 Polarization: -23.71 SS G_CDS: 0.52 Total: -23.20 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.88 Total: -16.34 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.87 -5.89 -35.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.360 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds