Wall clock time and date at job start Thu Apr 9 2020 15:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47108 * 2 1 4 4 H 1.09005 * 109.47057 * 305.00533 * 3 2 1 5 5 C 1.50696 * 109.47712 * 185.00268 * 3 2 1 6 6 H 1.07999 * 120.00319 * 240.00495 * 5 3 2 7 7 C 1.37885 * 119.99717 * 59.99878 * 5 3 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 N 1.46506 * 109.47074 * 65.00243 * 3 2 1 14 14 C 1.39845 * 119.99951 * 275.00125 * 13 3 2 15 15 C 1.38828 * 120.08122 * 359.97438 * 14 13 3 16 16 C 1.38148 * 119.95048 * 179.97438 * 15 14 13 17 17 C 1.38275 * 120.10988 * 0.02562 * 16 15 14 18 18 C 1.50705 * 119.91722 * 179.97438 * 17 16 15 19 19 C 1.38289 * 120.16329 * 0.02562 * 17 16 15 20 20 C 1.38279 * 120.04658 * 359.68014 * 19 17 16 21 21 F 1.35098 * 120.05689 * 180.32242 * 20 19 17 22 22 H 1.08997 * 109.46748 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46964 * 299.99490 * 1 2 3 24 24 H 1.08992 * 109.47475 * 59.99643 * 1 2 3 25 25 H 1.09006 * 109.46964 * 240.00510 * 2 1 3 26 26 H 1.08997 * 109.47880 * 120.00136 * 2 1 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 28 28 H 0.97000 * 119.99972 * 95.00133 * 13 3 2 29 29 H 1.07998 * 120.02686 * 0.02850 * 15 14 13 30 30 H 1.08001 * 119.94845 * 180.02562 * 16 15 14 31 31 H 1.09003 * 109.46652 * 90.00075 * 18 17 16 32 32 H 1.09004 * 109.46984 * 209.99897 * 18 17 16 33 33 H 1.08994 * 109.47016 * 330.00393 * 18 17 16 34 34 H 1.07996 * 119.97330 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1432 0.8786 -1.2281 8 7 5.4539 0.8798 -1.3361 9 14 3.0961 0.1102 -2.5708 10 1 2.8744 -1.3259 -2.2647 11 1 1.7879 0.8095 -2.6394 12 1 3.7939 0.2363 -3.8756 13 7 1.6525 2.0975 1.2519 14 6 0.3894 2.6857 1.3714 15 6 -0.4984 2.6504 0.3047 16 6 -1.7457 3.2318 0.4259 17 6 -2.1112 3.8494 1.6079 18 6 -3.4728 4.4829 1.7351 19 6 -1.2301 3.8882 2.6730 20 6 0.0177 3.3030 2.5610 21 9 0.8762 3.3351 3.6036 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8935 -0.5138 0.8899 27 1 5.8770 0.4814 -2.1127 28 1 2.2720 2.1231 1.9978 29 1 -0.2146 2.1680 -0.6189 30 1 -2.4365 3.2040 -0.4038 31 1 -4.1822 3.7464 2.1126 32 1 -3.4192 5.3235 2.4269 33 1 -3.8016 4.8367 0.7581 34 1 -1.5187 4.3718 3.5946 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036680521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:09:29 Heat of formation + Delta-G solvation = -21.445727 kcal Electronic energy + Delta-G solvation = -16969.875815 eV Core-core repulsion = 14203.001685 eV Total energy + Delta-G solvation = -2766.874130 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.31563 -39.19323 -36.54310 -33.14502 -31.91666 -30.77126 -29.93117 -27.71096 -25.17321 -22.91163 -22.66878 -21.17127 -19.67542 -17.82302 -16.54354 -16.19570 -15.88338 -15.28945 -15.02401 -14.24829 -13.96050 -13.63512 -13.35823 -13.22725 -13.02450 -12.81909 -12.28911 -11.99496 -11.82818 -11.58214 -11.39464 -11.18227 -11.02481 -10.73873 -10.52404 -10.02773 -9.58266 -9.44846 -9.21679 -8.71512 -8.41303 -6.67699 -6.25979 -4.28703 1.60846 1.84711 3.15344 3.24574 3.27889 4.04794 4.15853 4.23303 4.72295 5.03569 5.06266 5.15430 5.45783 5.55922 5.70464 5.72026 5.82259 5.82895 5.95904 5.96618 6.18180 6.33153 6.42061 6.47444 6.53923 6.65952 6.70127 6.74192 6.90944 7.14146 7.25683 7.38370 7.86580 8.33435 8.50271 8.76795 9.33123 10.86499 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033449 B = 0.007471 C = 0.006647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.900101 B = 3746.845864 C = 4211.253305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.145 4.145 3 C 0.247 3.753 4 H 0.040 0.960 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.077 3.923 8 N -0.890 5.890 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.264 1.264 12 H -0.293 1.293 13 N -0.711 5.711 14 C 0.207 3.793 15 C -0.181 4.181 16 C -0.080 4.080 17 C -0.147 4.147 18 C -0.099 4.099 19 C -0.104 4.104 20 C -0.002 4.002 21 F -0.149 7.149 22 H 0.039 0.961 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.268 0.732 28 H 0.400 0.600 29 H 0.139 0.861 30 H 0.119 0.881 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.882 3.167 3.607 15.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.183 4.183 3 C 0.143 3.857 4 H 0.058 0.942 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.126 4.126 8 N -0.527 5.527 9 Si 0.716 3.284 10 H -0.202 1.202 11 H -0.189 1.189 12 H -0.221 1.221 13 N -0.333 5.333 14 C 0.097 3.903 15 C -0.204 4.204 16 C -0.099 4.099 17 C -0.150 4.150 18 C -0.155 4.155 19 C -0.124 4.124 20 C -0.027 4.027 21 F -0.128 7.128 22 H 0.058 0.942 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.235 0.765 29 H 0.156 0.844 30 H 0.137 0.863 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.573 3.001 3.329 15.246 hybrid contribution 0.110 -0.557 -0.281 0.633 sum -14.463 2.445 3.048 14.981 Atomic orbital electron populations 1.22248 0.97566 1.00284 1.01502 1.22402 0.93973 1.00456 1.01502 1.19140 0.96058 0.88061 0.82465 0.94215 1.21031 0.88594 1.39707 1.07866 0.90195 1.24866 0.94898 0.95181 0.97683 1.69870 1.08701 1.44318 1.29801 0.86866 0.80596 0.79921 0.80998 1.20202 1.18870 1.22052 1.45175 1.11954 1.58496 1.17704 1.18032 0.87772 0.92179 0.92274 1.20937 0.94239 1.06197 0.99071 1.20746 0.95672 0.96666 0.96825 1.19288 0.96845 1.04656 0.94195 1.20583 0.93447 0.99612 1.01894 1.20615 0.92004 1.00383 0.99380 1.17113 0.90507 1.10027 0.85037 1.91403 1.69658 1.95600 1.56145 0.94206 0.92016 0.93092 0.92659 0.91880 0.92215 0.76550 0.84353 0.86280 0.92121 0.92285 0.92095 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 8.22 37.16 0.31 -2.48 16 2 C -0.14 -3.03 5.11 -26.73 -0.14 -3.17 16 3 C 0.25 5.58 1.79 -69.08 -0.12 5.46 16 4 H 0.04 0.93 5.54 -51.93 -0.29 0.64 16 5 C -0.53 -14.38 9.31 -34.44 -0.32 -14.70 16 6 H 0.08 2.34 7.98 -52.49 -0.42 1.92 16 7 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 8 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 9 Si 0.89 20.86 24.41 -169.99 -4.15 16.71 16 10 H -0.28 -6.32 6.83 56.52 0.39 -5.93 16 11 H -0.26 -5.85 6.53 56.52 0.37 -5.48 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 N -0.71 -14.59 5.18 -53.22 -0.28 -14.87 16 14 C 0.21 3.84 5.49 -83.67 -0.46 3.38 16 15 C -0.18 -3.06 6.72 -39.40 -0.26 -3.33 16 16 C -0.08 -1.14 9.69 -39.60 -0.38 -1.52 16 17 C -0.15 -1.99 5.88 -104.59 -0.62 -2.61 16 18 C -0.10 -0.99 10.01 36.01 0.36 -0.63 16 19 C -0.10 -1.54 9.67 -39.55 -0.38 -1.92 16 20 C 0.00 -0.04 7.31 -39.25 -0.29 -0.33 16 21 F -0.15 -2.69 16.64 2.25 0.04 -2.65 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 1.07 5.39 -51.93 -0.28 0.79 16 24 H 0.05 0.85 6.35 -51.93 -0.33 0.52 16 25 H 0.06 1.22 3.22 -51.93 -0.17 1.05 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 28 H 0.40 8.23 8.03 -40.82 -0.33 7.90 16 29 H 0.14 2.41 4.01 -52.49 -0.21 2.20 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 270.86 15.07 4.08 4.08 Total: -1.00 -28.23 270.86 -6.10 -34.33 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -4.16 Total: 7.70 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -2.40 Total: -19.81 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.50 Total: -40.36 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.15 Total: 16.71 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.23 -6.10 -34.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036680521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.884 kcal (2) G-P(sol) polarization free energy of solvation -28.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds