Wall clock time and date at job start Thu Apr 9 2020 15:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.49222 * 2 1 4 4 C 1.53038 * 109.49710 * 239.89984 * 2 1 3 5 5 C 1.53082 * 109.65418 * 178.74734 * 4 2 1 6 6 C 1.53193 * 109.29772 * 61.15320 * 5 4 2 7 7 H 1.09003 * 109.58315 * 65.43346 * 6 5 4 8 8 C 1.52994 * 109.58675 * 185.71836 * 6 5 4 9 9 N 1.46930 * 108.89200 * 305.57698 * 6 5 4 10 10 C 1.34768 * 120.63155 * 233.51494 * 9 6 5 11 11 O 1.21286 * 120.00102 * 5.05762 * 10 9 6 12 12 C 1.50705 * 120.00196 * 185.05677 * 10 9 6 13 13 C 1.53000 * 109.47080 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.46874 * 179.97438 * 13 12 10 15 15 H 1.07994 * 119.99990 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99878 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99954 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99921 * 0.02562 * 16 14 13 19 19 H 1.48491 * 109.47442 * 89.99696 * 18 16 14 20 20 H 1.48509 * 109.46891 * 209.99773 * 18 16 14 21 21 H 1.48495 * 109.47117 * 329.99314 * 18 16 14 22 22 C 1.46927 * 118.73881 * 53.53646 * 9 6 5 23 23 H 1.08996 * 109.47247 * 299.93491 * 1 2 3 24 24 H 1.08991 * 109.46984 * 59.94061 * 1 2 3 25 25 H 1.09002 * 109.46739 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.45925 * 298.69613 * 4 2 1 27 27 H 1.08997 * 109.46073 * 58.67966 * 4 2 1 28 28 H 1.08999 * 109.38998 * 301.27819 * 5 4 2 29 29 H 1.09001 * 109.61851 * 181.16929 * 5 4 2 30 30 H 1.09003 * 109.47107 * 183.78726 * 8 6 5 31 31 H 1.09000 * 109.47143 * 63.79234 * 8 6 5 32 32 H 1.09000 * 109.47485 * 303.79020 * 8 6 5 33 33 H 1.08993 * 109.46844 * 299.99987 * 12 10 9 34 34 H 1.09000 * 109.46511 * 59.99919 * 12 10 9 35 35 H 1.08999 * 109.47559 * 300.00321 * 13 12 10 36 36 H 1.09010 * 109.46873 * 60.00289 * 13 12 10 37 37 H 0.96996 * 119.99827 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.58827 * 66.17721 * 22 9 6 39 39 H 1.09001 * 109.58668 * 186.60325 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7235 -1.2481 5 6 3.5713 -0.6984 -1.2676 6 6 4.1054 -1.4266 -0.0302 7 1 3.8398 -2.4823 -0.0845 8 6 5.6274 -1.2832 0.0323 9 7 3.5047 -0.8286 1.1700 10 6 4.2811 -0.3855 2.1785 11 8 5.4884 -0.3937 2.0630 12 6 3.6492 0.1203 3.4497 13 6 4.7442 0.5590 4.4241 14 6 4.1123 1.0653 5.6951 15 1 3.0372 1.0729 5.7977 16 6 4.9066 1.5177 6.7272 17 7 4.3552 1.9591 7.8365 18 14 6.7662 1.5037 6.5498 19 1 7.2176 2.7930 5.9678 20 1 7.3894 1.3182 7.8850 21 1 7.1698 0.3887 5.6560 22 6 2.0414 -0.7233 1.2499 23 1 -0.3633 0.5128 0.8905 24 1 -0.3633 0.5147 -0.8894 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6968 -1.7577 -1.2346 27 1 1.6584 -0.2250 -2.1388 28 1 3.9164 0.3355 -1.2585 29 1 3.9340 -1.1957 -2.1672 30 1 6.0122 -1.8576 0.8750 31 1 5.8884 -0.2326 0.1593 32 1 6.0659 -1.6572 -0.8929 33 1 3.0037 0.9685 3.2221 34 1 3.0576 -0.6753 3.9028 35 1 5.3894 -0.2896 4.6517 36 1 5.3362 1.3544 3.9712 37 1 4.9140 2.2777 8.5625 38 1 1.6053 -1.7211 1.2987 39 1 1.7638 -0.1571 2.1390 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335705331.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:38 Heat of formation + Delta-G solvation = -48.679788 kcal Electronic energy + Delta-G solvation = -17820.180636 eV Core-core repulsion = 15148.274374 eV Total energy + Delta-G solvation = -2671.906261 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.30152 -37.52908 -34.14218 -33.42464 -32.80494 -31.02305 -28.87966 -26.35478 -25.59972 -23.96178 -22.22127 -20.64401 -20.21615 -18.55462 -17.00750 -15.97004 -15.91015 -15.33528 -14.84059 -14.35097 -14.10136 -13.73582 -13.49087 -13.29716 -12.86239 -12.53845 -12.34034 -12.27220 -12.03609 -11.79473 -11.56344 -11.34468 -11.01638 -10.97996 -10.87980 -10.70260 -10.50076 -10.08988 -9.95126 -9.73385 -9.15971 -8.55002 -8.49635 -8.32611 -6.01620 -4.00041 3.13391 3.23964 3.38938 3.45432 3.56594 4.52337 4.54140 4.66627 4.69620 4.86203 5.12047 5.23114 5.33797 5.34108 5.38058 5.42149 5.52586 5.60303 5.68689 5.72979 5.80064 5.90582 5.94551 5.97349 6.03311 6.09158 6.11497 6.21972 6.37711 6.56082 6.72896 6.91061 7.39050 7.46298 7.72165 7.82893 8.52062 8.70605 9.01634 9.61723 11.11310 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.031746 B = 0.006119 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.799123 B = 4574.818510 C = 5309.492834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 H 0.075 0.925 4 C -0.113 4.113 5 C -0.132 4.132 6 C 0.143 3.857 7 H 0.064 0.936 8 C -0.135 4.135 9 N -0.620 5.620 10 C 0.512 3.488 11 O -0.533 6.533 12 C -0.123 4.123 13 C 0.002 3.998 14 C -0.524 4.524 15 H 0.072 0.928 16 C 0.069 3.931 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.261 1.261 22 C 0.112 3.888 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.023 0.977 36 H 0.018 0.982 37 H 0.263 0.737 38 H 0.065 0.935 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.383 -6.491 -18.915 20.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 H 0.094 0.906 4 C -0.151 4.151 5 C -0.170 4.170 6 C 0.040 3.960 7 H 0.082 0.918 8 C -0.192 4.192 9 N -0.355 5.355 10 C 0.303 3.697 11 O -0.409 6.409 12 C -0.163 4.163 13 C -0.035 4.035 14 C -0.562 4.562 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.543 5.543 18 Si 0.704 3.296 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.185 1.185 22 C -0.011 4.011 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.041 0.959 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.670 -6.427 -18.780 20.643 hybrid contribution 0.755 0.068 -0.023 0.758 sum -4.915 -6.359 -18.802 20.448 Atomic orbital electron populations 1.21768 0.94422 1.01969 1.02132 1.21526 0.95841 1.00350 0.95126 0.90627 1.21580 0.95361 1.00593 0.97519 1.22025 0.95709 1.01571 0.97694 1.21196 0.94639 0.95893 0.84315 0.91842 1.22204 0.92583 1.04319 1.00105 1.48285 1.06559 1.62419 1.18271 1.21470 0.87324 0.76060 0.84877 1.90694 1.14784 1.54400 1.81058 1.21720 1.01233 1.01228 0.92072 1.19366 0.93684 0.96834 0.93664 1.21120 0.95169 1.42029 0.97871 0.90994 1.24967 0.98733 0.94498 0.95014 1.69910 1.35667 1.43241 1.05508 0.86798 0.86040 0.79424 0.77310 1.20274 1.21465 1.18530 1.21787 0.79823 1.00650 0.98816 0.92115 0.92502 0.92553 0.91940 0.91895 0.91524 0.91139 0.90956 0.90901 0.94607 0.89892 0.89807 0.95872 0.96345 0.92745 0.91720 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.20 37.16 0.34 -0.81 16 2 C -0.11 -1.07 2.88 -90.50 -0.26 -1.33 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.11 -1.01 5.16 -26.67 -0.14 -1.15 16 5 C -0.13 -1.37 5.38 -26.59 -0.14 -1.51 16 6 C 0.14 1.84 3.49 -67.60 -0.24 1.60 16 7 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 8 C -0.14 -1.98 7.59 37.15 0.28 -1.69 16 9 N -0.62 -9.06 2.97 -165.21 -0.49 -9.55 16 10 C 0.51 9.60 7.60 -10.99 -0.08 9.51 16 11 O -0.53 -11.55 11.38 5.55 0.06 -11.48 16 12 C -0.12 -2.44 4.04 -27.88 -0.11 -2.55 16 13 C 0.00 0.06 3.33 -27.88 -0.09 -0.03 16 14 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 15 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 18 Si 0.88 22.79 27.47 -169.99 -4.67 18.12 16 19 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 22 C 0.11 1.30 5.61 -3.71 -0.02 1.28 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.22 6.77 -51.93 -0.35 0.87 16 31 H 0.07 1.23 6.73 -51.93 -0.35 0.88 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 1.54 7.48 -51.93 -0.39 1.15 16 34 H 0.08 1.56 8.11 -51.93 -0.42 1.14 16 35 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 36 H 0.02 0.48 7.53 -51.92 -0.39 0.09 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.10 5.96 -51.93 -0.31 0.79 16 LS Contribution 301.54 15.07 4.54 4.54 Total: -1.00 -32.47 301.54 -7.49 -39.97 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -6.82 Total: -4.00 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -0.89 Total: -10.17 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.28 Total: -36.98 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.06 Total: -11.48 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.67 Total: 18.12 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.47 -7.49 -39.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335705331.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.714 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds