Wall clock time and date at job start Thu Apr 9 2020 15:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00063 * 2 1 4 4 H 1.48497 * 109.47344 * 239.99698 * 3 2 1 5 5 H 1.48498 * 109.47190 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46836 * 120.00076 * 3 2 1 7 7 C 1.37876 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00049 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00105 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.47158 * 180.02562 * 9 7 2 11 11 O 1.42899 * 109.47113 * 180.02562 * 10 9 7 12 12 C 1.42903 * 113.99629 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46878 * 179.97438 * 12 11 10 14 14 C 1.38241 * 119.98648 * 269.72641 * 13 12 11 15 15 C 1.38215 * 120.00743 * 179.72780 * 14 13 12 16 16 C 1.38349 * 119.98879 * 0.54512 * 15 14 13 17 17 Cl 1.73606 * 120.01120 * 179.70588 * 16 15 14 18 18 C 1.38346 * 119.97570 * 359.73013 * 16 15 14 19 19 C 1.38215 * 119.98756 * 359.97438 * 18 16 15 20 20 H 0.97002 * 120.00415 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47397 * 60.00594 * 9 7 2 22 22 H 1.08998 * 109.47229 * 299.99636 * 9 7 2 23 23 H 1.09007 * 109.46516 * 60.00039 * 10 9 7 24 24 H 1.09004 * 109.47113 * 300.00507 * 10 9 7 25 25 H 1.09002 * 109.47382 * 59.99956 * 12 11 10 26 26 H 1.09001 * 109.46938 * 299.99942 * 12 11 10 27 27 H 1.07995 * 119.99451 * 359.97438 * 14 13 12 28 28 H 1.07999 * 120.00426 * 180.27387 * 15 14 13 29 29 H 1.08006 * 120.01050 * 179.97438 * 18 16 15 30 30 H 1.07995 * 119.99616 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 8 1.5306 -4.8997 -0.0011 12 6 2.3705 -6.0558 -0.0006 13 6 1.5163 -7.2973 -0.0007 14 6 1.1289 -7.8695 1.1967 15 6 0.3408 -9.0049 1.1971 16 6 -0.0510 -9.5752 -0.0009 17 17 -1.0346 -11.0057 -0.0010 18 6 0.3417 -9.0054 -1.1988 19 6 1.1247 -7.8664 -1.1982 20 1 -0.4851 0.8400 -0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.8718 -3.6044 0.8895 24 1 2.8719 -3.6044 -0.8905 25 1 2.9992 -6.0478 0.8898 26 1 3.0004 -6.0476 -0.8902 27 1 1.4389 -7.4270 2.1318 28 1 0.0345 -9.4493 2.1326 29 1 0.0365 -9.4504 -2.1344 30 1 1.4317 -7.4217 -2.1332 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083473809.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:36 Heat of formation + Delta-G solvation = -44.910045 kcal Electronic energy + Delta-G solvation = -13864.341190 eV Core-core repulsion = 11263.922711 eV Total energy + Delta-G solvation = -2600.418479 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.51913 -37.31278 -36.49312 -33.32037 -31.79316 -31.17783 -29.69671 -25.95426 -24.31531 -22.94615 -21.45102 -20.83672 -17.27312 -16.65000 -15.98724 -15.53873 -15.42121 -14.76156 -14.55701 -13.97483 -13.62645 -13.54643 -12.63184 -12.56542 -12.23921 -11.62746 -11.60766 -11.32841 -11.00810 -10.93344 -10.75366 -10.52749 -10.31101 -9.56825 -9.23539 -9.14139 -8.97903 -8.71858 -8.37737 -6.04566 -4.08745 0.98532 1.19993 1.97954 3.31029 3.35353 3.37105 3.45103 4.32204 4.51325 4.64584 4.76732 5.08347 5.15444 5.23210 5.31288 5.51616 5.54489 5.66353 5.86019 6.09607 6.10096 6.21874 6.23350 6.49859 6.68270 6.84209 7.49332 7.76397 7.78213 8.06976 8.33273 8.97631 9.55044 11.06979 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.061766 B = 0.003497 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.214763 B = 8004.552600 C = 8142.438655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.026 3.974 10 C 0.068 3.932 11 O -0.385 6.385 12 C 0.097 3.903 13 C -0.074 4.074 14 C -0.087 4.087 15 C -0.114 4.114 16 C -0.035 4.035 17 Cl -0.078 7.078 18 C -0.114 4.114 19 C -0.087 4.087 20 H 0.263 0.737 21 H 0.024 0.976 22 H 0.024 0.976 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.341 -19.437 -0.003 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.008 4.008 11 O -0.305 6.305 12 C 0.020 3.980 13 C -0.074 4.074 14 C -0.106 4.106 15 C -0.133 4.133 16 C -0.061 4.061 17 Cl -0.049 7.049 18 C -0.133 4.133 19 C -0.106 4.106 20 H 0.072 0.928 21 H 0.043 0.957 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.894 -19.446 -0.002 19.538 hybrid contribution 0.589 0.826 0.001 1.014 sum 2.483 -18.620 -0.001 18.785 Atomic orbital electron populations 1.69970 1.06085 1.26927 1.49931 1.24997 0.94883 0.99306 0.95078 0.86578 0.79510 0.82787 0.78653 1.20152 1.21166 1.20159 1.21012 0.92969 0.90547 1.51894 0.92574 1.19067 0.94234 0.89354 0.98498 1.22935 0.96488 0.82990 0.98358 1.88017 1.33689 1.13472 1.95308 1.21229 0.91694 0.84377 1.00678 1.19891 0.98494 0.95761 0.93242 1.21081 0.96553 0.94580 0.98350 1.21027 0.98835 0.96547 0.96866 1.20940 0.98627 0.91183 0.95372 1.98360 1.69359 1.38237 1.98982 1.21028 0.98887 0.96500 0.96867 1.21082 0.96573 0.94541 0.98358 0.92751 0.95719 0.95732 0.94527 0.94535 0.92797 0.92789 0.84814 0.84916 0.84916 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 10 C 0.07 1.46 5.88 37.16 0.22 1.68 16 11 O -0.38 -7.70 10.33 -35.23 -0.36 -8.06 16 12 C 0.10 1.44 6.06 36.01 0.22 1.65 16 13 C -0.07 -0.99 5.51 -104.62 -0.58 -1.57 16 14 C -0.09 -1.07 9.70 -39.59 -0.38 -1.45 16 15 C -0.11 -1.29 9.83 -39.55 -0.39 -1.68 16 16 C -0.03 -0.40 6.32 -39.50 -0.25 -0.65 16 17 Cl -0.08 -0.81 28.96 -51.86 -1.50 -2.32 16 18 C -0.11 -1.29 9.83 -39.55 -0.39 -1.68 16 19 C -0.09 -1.07 9.70 -39.59 -0.38 -1.45 16 20 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 21 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 26 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 27 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 30 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 283.19 15.07 4.27 4.27 Total: -1.00 -30.74 283.19 -8.14 -38.88 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: -3.76 Total: -4.78 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.49 Total: -18.25 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.19 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.36 Total: -8.06 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.74 -8.14 -38.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083473809.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.033 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds