Wall clock time and date at job start Thu Apr 9 2020 15:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.40073 * 119.84055 * 212.11414 * 3 2 1 5 5 C 1.36475 * 120.25532 * 179.97438 * 4 3 2 6 6 C 1.39599 * 119.97683 * 0.02562 * 5 4 3 7 7 C 1.40665 * 120.36843 * 359.97438 * 6 5 4 8 8 C 1.38658 * 119.37602 * 0.21707 * 7 6 5 9 9 N 1.38221 * 107.67204 * 179.97438 * 7 6 5 10 10 H 0.96996 * 124.68121 * 179.97438 * 9 7 6 11 11 C 1.34536 * 110.63643 * 359.97438 * 9 7 6 12 12 C 1.38381 * 109.60303 * 0.02562 * 11 9 7 13 13 C 1.46961 * 126.88299 * 180.02562 * 12 11 9 14 14 O 1.21982 * 120.00602 * 179.97438 * 13 12 11 15 15 C 1.41490 * 119.99715 * 359.97420 * 13 12 11 16 16 H 1.08001 * 120.00580 * 359.97438 * 15 13 12 17 17 C 1.40318 * 120.00043 * 180.02562 * 15 13 12 18 18 N 1.30541 * 119.99766 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99941 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47160 * 59.99856 * 19 17 15 21 21 H 1.48501 * 109.46702 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46870 * 299.99312 * 19 17 15 23 23 H 1.07999 * 119.87665 * 359.96628 * 4 3 2 24 24 H 1.08003 * 120.01186 * 179.97438 * 5 4 3 25 25 H 1.08001 * 120.14207 * 179.97438 * 8 7 6 26 26 H 1.08003 * 125.20326 * 179.97438 * 11 9 7 27 27 H 0.97007 * 119.99723 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2646 1.0301 0.6459 5 6 4.6293 1.0388 0.6516 6 6 5.3360 0.0191 0.0115 7 6 4.6493 -1.0208 -0.6410 8 6 3.2628 -1.0218 -0.6467 9 7 5.5939 -1.8750 -1.1782 10 1 5.3888 -2.6781 -1.6819 11 6 6.8371 -1.4388 -0.9058 12 6 6.7678 -0.2685 -0.1706 13 6 7.8977 0.5283 0.3277 14 8 7.6911 1.5465 0.9670 15 6 9.2251 0.1144 0.0659 16 1 9.4081 -0.7872 -0.4997 17 6 10.3039 0.8749 0.5422 18 7 10.0828 1.9644 1.2263 19 14 12.0565 0.3288 0.1959 20 1 12.2769 0.2732 -1.2716 21 1 13.0054 1.2969 0.8022 22 1 12.2803 -1.0173 0.7816 23 1 2.7196 1.8200 1.1412 24 1 5.1623 1.8346 1.1505 25 1 2.7230 -1.8139 -1.1443 26 1 7.7498 -1.9277 -1.2132 27 1 10.8286 2.4904 1.5552 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259746625.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:36 Heat of formation + Delta-G solvation = 41.236942 kcal Electronic energy + Delta-G solvation = -15353.514918 eV Core-core repulsion = 12655.724559 eV Total energy + Delta-G solvation = -2697.790360 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.064 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.85332 -37.52474 -36.29606 -35.67784 -32.68279 -31.48380 -29.44323 -29.13295 -26.54729 -23.16808 -22.25089 -22.03042 -18.99198 -18.41539 -17.12161 -16.06840 -15.71002 -15.05175 -14.48749 -14.35315 -13.79446 -13.57127 -13.48963 -13.32159 -12.70347 -12.52442 -12.34155 -11.82691 -11.64223 -11.18684 -11.18370 -10.99865 -10.71973 -10.35288 -10.30854 -9.21676 -8.91095 -8.01013 -7.48253 -7.12505 -6.29773 -4.89728 0.96896 1.72876 2.74066 2.76111 3.06126 3.11363 3.12234 3.31095 3.38576 3.99165 4.15334 4.19660 4.55582 5.01148 5.25041 5.36038 5.52039 5.70770 5.84317 5.92605 6.06406 6.26343 6.45365 6.65612 6.84613 7.05741 7.20297 7.29019 7.45873 7.61692 7.81566 8.00359 8.79814 8.88422 10.33904 10.57415 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.051223 B = 0.005532 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.493680 B = 5060.322630 C = 5596.972853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.272 3.728 3 C -0.035 4.035 4 C -0.112 4.112 5 C -0.052 4.052 6 C -0.046 4.046 7 C 0.065 3.935 8 C -0.073 4.073 9 N -0.583 5.583 10 H 0.411 0.589 11 C 0.073 3.927 12 C -0.187 4.187 13 C 0.418 3.582 14 O -0.543 6.543 15 C -0.520 4.520 16 H 0.068 0.932 17 C 0.081 3.919 18 N -0.736 5.736 19 Si 0.904 3.096 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.266 1.266 23 H 0.127 0.873 24 H 0.144 0.856 25 H 0.123 0.877 26 H 0.179 0.821 27 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 -6.982 -4.377 9.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.042 4.042 3 C -0.039 4.039 4 C -0.134 4.134 5 C -0.071 4.071 6 C -0.052 4.052 7 C -0.041 4.041 8 C -0.097 4.097 9 N -0.184 5.184 10 H 0.248 0.752 11 C -0.056 4.056 12 C -0.194 4.194 13 C 0.313 3.687 14 O -0.432 6.432 15 C -0.551 4.551 16 H 0.087 0.913 17 C -0.142 4.142 18 N -0.364 5.364 19 Si 0.728 3.272 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.190 1.190 23 H 0.145 0.855 24 H 0.162 0.838 25 H 0.141 0.859 26 H 0.196 0.804 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.553 -6.428 -4.030 10.025 hybrid contribution 1.282 -0.921 -0.578 1.681 sum -5.271 -7.349 -4.608 10.151 Atomic orbital electron populations 1.81197 1.12195 1.08774 1.09830 1.25762 0.92630 0.92967 0.92868 1.15494 0.83553 0.98943 1.05959 1.20554 0.94011 0.97859 1.00978 1.20505 0.92384 0.97652 0.96546 1.19456 0.93526 0.94200 0.98040 1.18000 0.90075 0.93977 1.02020 1.19780 0.90212 0.98552 1.01142 1.41302 1.05030 1.23715 1.48362 0.75238 1.22625 0.86776 0.96600 0.99592 1.22822 0.93703 0.97992 1.04909 1.17260 0.85859 0.84577 0.80987 1.90536 1.86727 1.25853 1.40116 1.20714 0.91961 1.09465 1.32994 0.91343 1.25956 1.01024 0.93965 0.93253 1.69952 1.33016 1.10532 1.22935 0.86475 0.81675 0.79419 0.79592 1.19022 1.20331 1.19019 0.85525 0.83804 0.85908 0.80399 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.02 18.54 41.84 0.78 -6.25 15 2 C 0.27 3.89 15.30 -22.47 -0.34 3.55 15 3 C -0.03 -0.49 5.74 -106.81 -0.61 -1.10 15 4 C -0.11 -1.68 9.68 -39.53 -0.38 -2.06 15 5 C -0.05 -0.95 9.79 -39.71 -0.39 -1.34 15 6 C -0.05 -0.90 6.27 -104.84 -0.66 -1.56 15 7 C 0.07 1.02 7.23 -83.91 -0.61 0.41 15 8 C -0.07 -0.98 9.77 -38.96 -0.38 -1.36 15 9 N -0.58 -7.80 5.94 -10.20 -0.06 -7.86 15 10 H 0.41 3.69 8.96 -40.82 -0.37 3.33 15 11 C 0.07 1.21 11.32 -16.31 -0.18 1.02 15 12 C -0.19 -4.02 6.31 -102.68 -0.65 -4.67 15 13 C 0.42 11.15 6.91 -34.81 -0.24 10.91 15 14 O -0.54 -16.40 14.67 4.93 0.07 -16.33 15 15 C -0.52 -13.40 9.00 -37.56 -0.34 -13.73 15 16 H 0.07 1.55 6.85 -52.49 -0.36 1.19 15 17 C 0.08 2.09 5.50 -17.32 -0.10 1.99 15 18 N -0.74 -20.43 11.72 55.56 0.65 -19.78 15 19 Si 0.90 18.34 29.56 -169.99 -5.03 13.32 15 20 H -0.27 -5.24 7.11 56.52 0.40 -4.83 15 21 H -0.28 -5.56 7.11 56.52 0.40 -5.16 15 22 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 23 H 0.13 1.60 8.06 -52.49 -0.42 1.18 15 24 H 0.14 2.84 7.42 -52.48 -0.39 2.45 15 25 H 0.12 1.28 8.06 -52.49 -0.42 0.86 15 26 H 0.18 2.46 7.29 -52.48 -0.38 2.07 15 27 H 0.27 6.86 8.29 -40.82 -0.34 6.52 15 LS Contribution 259.52 15.07 3.91 3.91 Total: -1.00 -32.13 259.52 -6.03 -38.16 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -1.48 Total: 2.77 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -4.88 Total: -7.94 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 1.37 Total: -33.89 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.07 Total: -16.33 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.13 -6.03 -38.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259746625.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.396 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds