Wall clock time and date at job start Thu Apr 9 2020 15:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.40073 * 119.84055 * 212.11414 * 3 2 1 5 5 C 1.36475 * 120.25532 * 179.97438 * 4 3 2 6 6 C 1.39599 * 119.97683 * 0.02562 * 5 4 3 7 7 C 1.40665 * 120.36843 * 359.97438 * 6 5 4 8 8 C 1.38658 * 119.37602 * 0.21707 * 7 6 5 9 9 N 1.38221 * 107.67204 * 179.97438 * 7 6 5 10 10 H 0.96996 * 124.68121 * 179.97438 * 9 7 6 11 11 C 1.34536 * 110.63643 * 359.97438 * 9 7 6 12 12 C 1.38381 * 109.60303 * 0.02562 * 11 9 7 13 13 C 1.46961 * 126.88299 * 180.02562 * 12 11 9 14 14 O 1.21982 * 120.00602 * 179.97438 * 13 12 11 15 15 C 1.41490 * 119.99715 * 359.97420 * 13 12 11 16 16 H 1.08001 * 120.00580 * 359.97438 * 15 13 12 17 17 C 1.40318 * 120.00043 * 180.02562 * 15 13 12 18 18 N 1.30541 * 119.99766 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99941 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47160 * 59.99856 * 19 17 15 21 21 H 1.48501 * 109.46702 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46870 * 299.99312 * 19 17 15 23 23 H 1.07999 * 119.87665 * 359.96628 * 4 3 2 24 24 H 1.08003 * 120.01186 * 179.97438 * 5 4 3 25 25 H 1.08001 * 120.14207 * 179.97438 * 8 7 6 26 26 H 1.08003 * 125.20326 * 179.97438 * 11 9 7 27 27 H 0.97007 * 119.99723 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2646 1.0301 0.6459 5 6 4.6293 1.0388 0.6516 6 6 5.3360 0.0191 0.0115 7 6 4.6493 -1.0208 -0.6410 8 6 3.2628 -1.0218 -0.6467 9 7 5.5939 -1.8750 -1.1782 10 1 5.3888 -2.6781 -1.6819 11 6 6.8371 -1.4388 -0.9058 12 6 6.7678 -0.2685 -0.1706 13 6 7.8977 0.5283 0.3277 14 8 7.6911 1.5465 0.9670 15 6 9.2251 0.1144 0.0659 16 1 9.4081 -0.7872 -0.4997 17 6 10.3039 0.8749 0.5422 18 7 10.0828 1.9644 1.2263 19 14 12.0565 0.3288 0.1959 20 1 12.2769 0.2732 -1.2716 21 1 13.0054 1.2969 0.8022 22 1 12.2803 -1.0173 0.7816 23 1 2.7196 1.8200 1.1412 24 1 5.1623 1.8346 1.1505 25 1 2.7230 -1.8139 -1.1443 26 1 7.7498 -1.9277 -1.2132 27 1 10.8286 2.4904 1.5552 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259746625.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:36 Heat of formation + Delta-G solvation = 20.207265 kcal Electronic energy + Delta-G solvation = -15354.426834 eV Core-core repulsion = 12655.724559 eV Total energy + Delta-G solvation = -2698.702275 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.064 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.14632 -38.79986 -38.19640 -36.90667 -34.62826 -32.84951 -30.72604 -30.63155 -28.34321 -24.46239 -23.82025 -23.36798 -20.54628 -19.78570 -18.39015 -17.94202 -16.99252 -16.74070 -15.73747 -15.62563 -15.22055 -14.91677 -14.72417 -14.70286 -14.53915 -13.78263 -13.74873 -13.61653 -13.25900 -12.63220 -12.62119 -12.41292 -12.20584 -12.06801 -11.91029 -10.89475 -10.48703 -9.46240 -9.25866 -8.53023 -8.20255 -6.90546 -0.24275 0.41744 1.28898 1.45046 1.55302 1.59278 1.60150 2.01579 2.20087 2.28873 2.63634 2.97212 3.01182 3.85597 3.92825 4.03833 4.16335 4.34746 4.40677 4.67427 4.76024 5.02041 5.05535 5.30707 5.33353 5.52644 5.71178 5.85225 6.07092 6.10719 6.46356 6.75803 6.84652 7.02791 8.44793 8.67276 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.051223 B = 0.005532 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.493680 B = 5060.322630 C = 5596.972853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.294 3.706 3 C -0.035 4.035 4 C -0.092 4.092 5 C -0.090 4.090 6 C -0.075 4.075 7 C 0.065 3.935 8 C -0.043 4.043 9 N -0.553 5.553 10 H 0.440 0.560 11 C 0.124 3.876 12 C -0.266 4.266 13 C 0.396 3.604 14 O -0.602 6.602 15 C -0.547 4.547 16 H 0.098 0.902 17 C 0.023 3.977 18 N -0.795 5.795 19 Si 0.992 3.008 20 H -0.250 1.250 21 H -0.279 1.279 22 H -0.250 1.250 23 H 0.145 0.855 24 H 0.107 0.893 25 H 0.168 0.832 26 H 0.211 0.789 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.207 -10.260 -6.437 13.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.020 4.020 3 C -0.040 4.040 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.080 4.080 7 C -0.041 4.041 8 C -0.065 4.065 9 N -0.156 5.156 10 H 0.282 0.718 11 C -0.009 4.009 12 C -0.273 4.273 13 C 0.296 3.704 14 O -0.497 6.497 15 C -0.578 4.578 16 H 0.116 0.884 17 C -0.195 4.195 18 N -0.425 5.425 19 Si 0.811 3.189 20 H -0.174 1.174 21 H -0.204 1.204 22 H -0.174 1.174 23 H 0.163 0.837 24 H 0.125 0.875 25 H 0.185 0.815 26 H 0.228 0.772 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.100 -9.763 -6.126 13.537 hybrid contribution 1.300 0.050 0.032 1.301 sum -5.800 -9.713 -6.094 12.850 Atomic orbital electron populations 1.81243 1.12771 1.09476 1.10588 1.25480 0.92136 0.92268 0.92130 1.15431 0.83436 0.98974 1.06153 1.20649 0.92622 0.98326 0.99696 1.20296 0.93713 0.97886 0.98970 1.19659 0.93321 0.95842 0.99177 1.18007 0.90910 0.93274 1.01950 1.20146 0.89152 0.98451 0.98794 1.41192 1.03518 1.23873 1.47010 0.71841 1.22852 0.88685 0.93894 0.95450 1.22322 0.93523 1.01167 1.10334 1.17982 0.88212 0.84267 0.79960 1.90477 1.88008 1.28472 1.42714 1.21292 0.92265 1.10676 1.33547 0.88392 1.27235 1.06604 0.93488 0.92194 1.70143 1.34838 1.12572 1.24902 0.85149 0.74465 0.79204 0.80058 1.17420 1.20355 1.17407 0.83719 0.87462 0.81455 0.77236 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -13.47 18.54 19.00 0.35 -13.12 15 2 C 0.29 7.53 15.30 88.33 1.35 8.88 15 3 C -0.04 -0.89 5.74 -21.28 -0.12 -1.02 15 4 C -0.09 -2.71 9.68 22.30 0.22 -2.49 15 5 C -0.09 -3.46 9.79 22.19 0.22 -3.25 15 6 C -0.07 -2.94 6.27 -20.01 -0.13 -3.07 15 7 C 0.06 1.83 7.23 38.83 0.28 2.11 15 8 C -0.04 -0.96 9.77 22.68 0.22 -0.74 15 9 N -0.55 -12.50 5.94 -186.17 -1.11 -13.61 15 10 H 0.44 5.31 8.96 -92.71 -0.83 4.47 15 11 C 0.12 3.77 11.32 84.31 0.95 4.72 15 12 C -0.27 -11.71 6.31 -18.61 -0.12 -11.83 15 13 C 0.40 22.40 6.91 25.36 0.18 22.57 15 14 O -0.60 -39.66 14.67 -5.26 -0.08 -39.74 15 15 C -0.55 -28.84 9.00 23.58 0.21 -28.63 15 16 H 0.10 4.33 6.85 -2.91 -0.02 4.31 15 17 C 0.02 1.20 5.50 85.39 0.47 1.67 15 18 N -0.80 -46.76 11.72 21.88 0.26 -46.50 15 19 Si 0.99 37.70 29.56 68.60 2.03 39.73 15 20 H -0.25 -8.83 7.11 99.48 0.71 -8.12 15 21 H -0.28 -10.44 7.11 99.48 0.71 -9.74 15 22 H -0.25 -8.82 7.11 99.48 0.71 -8.11 15 23 H 0.15 3.62 8.06 -2.91 -0.02 3.59 15 24 H 0.11 4.83 7.42 -2.91 -0.02 4.81 15 25 H 0.17 2.37 8.06 -2.91 -0.02 2.35 15 26 H 0.21 4.92 7.29 -2.91 -0.02 4.89 15 27 H 0.28 14.72 8.29 -92.70 -0.77 13.95 15 Total: -1.00 -77.49 259.52 5.60 -71.89 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.41 Total: 12.41 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 3.73 Total: -11.06 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -0.50 Total: -73.23 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.08 Total: -39.74 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -77.49 5.60 -71.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259746625.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.096 kcal (2) G-P(sol) polarization free energy of solvation -77.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds