Wall clock time and date at job start Thu Apr 9 2020 15:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38291 * 119.93812 * 2 1 4 4 C 1.38212 * 120.03727 * 180.02562 * 3 2 1 5 5 Cl 1.73606 * 120.03422 * 180.02562 * 4 3 2 6 6 C 1.38852 * 119.92766 * 359.97438 * 4 3 2 7 7 O 1.35927 * 120.05769 * 179.97438 * 6 4 3 8 8 C 1.38661 * 119.88098 * 359.97438 * 6 4 3 9 9 C 1.50697 * 120.02256 * 179.97438 * 8 6 4 10 10 H 1.09002 * 109.47015 * 0.02562 * 9 8 6 11 11 C 1.52998 * 109.47484 * 240.00398 * 9 8 6 12 12 C 1.50704 * 109.47123 * 120.00441 * 9 8 6 13 13 H 1.07997 * 119.99567 * 5.60854 * 12 9 8 14 14 C 1.37881 * 119.99950 * 185.61324 * 12 9 8 15 15 N 1.31506 * 120.00122 * 197.60241 * 14 12 9 16 16 Si 1.86800 * 119.99926 * 17.60898 * 14 12 9 17 17 H 1.48500 * 109.47095 * 179.97438 * 16 14 12 18 18 H 1.48503 * 109.47140 * 299.99501 * 16 14 12 19 19 H 1.48496 * 109.47701 * 59.99389 * 16 14 12 20 20 C 1.38194 * 119.95627 * 0.25790 * 8 6 4 21 21 H 1.08995 * 109.47359 * 90.00698 * 1 2 3 22 22 H 1.09003 * 109.46897 * 210.00479 * 1 2 3 23 23 H 1.09002 * 109.47280 * 329.99882 * 1 2 3 24 24 H 1.07996 * 119.97968 * 0.03583 * 3 2 1 25 25 H 0.96699 * 113.99848 * 270.01869 * 7 6 4 26 26 H 1.09002 * 109.46901 * 66.17000 * 11 9 8 27 27 H 1.09001 * 109.47574 * 186.17618 * 11 9 8 28 28 H 1.08997 * 109.47109 * 306.17654 * 11 9 8 29 29 H 0.97006 * 119.99591 * 354.79742 * 15 14 12 30 30 H 1.07998 * 119.96145 * 179.71897 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5793 1.2008 -0.0005 5 17 4.4456 2.7052 0.0001 6 6 4.2741 -0.0014 -0.0005 7 8 5.6334 -0.0021 -0.0016 8 6 3.5789 -1.2011 0.0005 9 6 4.3297 -2.5077 0.0000 10 1 5.4018 -2.3107 -0.0009 11 6 3.9572 -3.3096 -1.2487 12 6 3.9654 -3.2970 1.2310 13 1 3.1947 -2.9356 1.8956 14 6 4.6161 -4.4805 1.5087 15 7 4.0908 -5.3361 2.3580 16 14 6.2441 -4.8683 0.6787 17 1 6.7343 -6.1906 1.1441 18 1 6.0536 -4.9007 -0.7937 19 1 7.2387 -3.8219 1.0262 20 6 2.1969 -1.1979 -0.0038 21 1 -0.3634 -0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 1.6558 2.1329 0.0006 25 1 6.0260 -0.0025 -0.8853 26 1 4.3189 -2.7895 -2.1357 27 1 4.4137 -4.2979 -1.1954 28 1 2.8735 -3.4124 -1.3045 29 1 3.2854 -5.1028 2.8458 30 1 1.6554 -2.1322 -0.0075 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259747720.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:37 Heat of formation + Delta-G solvation = -64.007291 kcal Electronic energy + Delta-G solvation = -15051.765710 eV Core-core repulsion = 12450.519112 eV Total energy + Delta-G solvation = -2601.246598 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.06193 -37.90997 -37.58418 -36.37506 -33.81533 -32.39403 -30.40743 -27.32059 -26.75131 -24.57878 -22.76359 -21.03377 -19.55816 -19.29875 -17.32208 -16.81825 -16.23645 -15.85782 -15.28858 -14.96920 -14.54892 -14.40838 -14.06698 -13.60409 -13.48768 -13.28439 -13.12863 -12.92129 -12.43432 -12.32753 -12.00433 -11.91225 -11.69273 -11.62387 -11.23749 -10.98220 -10.38548 -9.62729 -9.34020 -8.69876 -6.34175 0.13322 0.30271 1.10987 1.45664 1.55318 1.72962 2.49059 2.56908 3.08321 3.23675 3.81751 3.94920 4.28208 4.33358 4.40949 4.63269 4.68650 4.82532 4.84780 4.92955 5.03472 5.08463 5.19939 5.25340 5.37813 5.59431 5.74430 5.84292 6.02410 6.08810 6.58188 6.80598 7.41579 8.65348 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.026210 B = 0.008463 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.022886 B = 3307.709503 C = 3995.698544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.084 4.084 3 C -0.115 4.115 4 C -0.062 4.062 5 Cl -0.059 7.059 6 C 0.085 3.915 7 O -0.494 6.494 8 C -0.066 4.066 9 C 0.046 3.954 10 H 0.039 0.961 11 C -0.140 4.140 12 C -0.587 4.587 13 H 0.016 0.984 14 C -0.021 4.021 15 N -0.940 5.940 16 Si 1.082 2.918 17 H -0.292 1.292 18 H -0.236 1.236 19 H -0.270 1.270 20 C -0.108 4.108 21 H 0.090 0.910 22 H 0.063 0.937 23 H 0.086 0.914 24 H 0.160 0.840 25 H 0.401 0.599 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.251 0.749 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.940 13.603 -9.847 17.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.084 4.084 3 C -0.133 4.133 4 C -0.090 4.090 5 Cl -0.030 7.030 6 C 0.040 3.960 7 O -0.305 6.305 8 C -0.067 4.067 9 C 0.027 3.973 10 H 0.057 0.943 11 C -0.197 4.197 12 C -0.625 4.625 13 H 0.034 0.966 14 C -0.218 4.218 15 N -0.576 5.576 16 Si 0.903 3.097 17 H -0.218 1.218 18 H -0.160 1.160 19 H -0.195 1.195 20 C -0.127 4.127 21 H 0.108 0.892 22 H 0.082 0.918 23 H 0.105 0.895 24 H 0.177 0.823 25 H 0.258 0.742 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.780 12.581 -9.397 15.804 hybrid contribution -1.122 0.937 0.423 1.522 sum -2.903 13.518 -8.974 16.483 Atomic orbital electron populations 1.20818 0.88133 1.03662 1.03726 1.20185 0.98073 0.91433 0.98732 1.20985 0.90808 0.99373 1.02149 1.21391 0.93354 0.86254 1.07962 1.98327 1.77149 1.30531 1.96999 1.18124 0.83753 0.90403 1.03728 1.84826 1.15113 1.96086 1.34518 1.20503 0.94725 0.94887 0.96612 1.18022 0.95584 0.89268 0.94437 0.94310 1.22136 1.00890 0.99914 0.96771 1.22085 1.21913 1.08974 1.09526 0.96594 1.27171 1.04886 0.92285 0.97472 1.71001 1.22609 1.34884 1.29102 0.83615 0.72170 0.76083 0.77815 1.21801 1.15994 1.19531 1.20989 0.93229 0.98324 1.00141 0.89196 0.91782 0.89477 0.82263 0.74157 0.92548 0.93383 0.93723 0.94038 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 10.01 71.24 0.71 -1.58 16 2 C -0.08 -2.49 5.88 -19.85 -0.12 -2.61 16 3 C -0.11 -3.21 9.48 22.28 0.21 -3.00 16 4 C -0.06 -1.98 6.33 22.41 0.14 -1.84 16 5 Cl -0.06 -1.61 28.51 -2.72 -0.08 -1.68 16 6 C 0.09 3.16 6.67 22.52 0.15 3.31 16 7 O -0.49 -17.25 11.73 -92.72 -1.09 -18.33 16 8 C -0.07 -2.74 4.76 -19.77 -0.09 -2.83 16 9 C 0.05 2.12 2.03 -12.29 -0.02 2.10 16 10 H 0.04 1.79 5.65 -2.39 -0.01 1.78 16 11 C -0.14 -5.69 8.77 71.98 0.63 -5.06 16 12 C -0.59 -33.43 8.54 25.60 0.22 -33.21 16 13 H 0.02 1.00 7.78 -2.91 -0.02 0.98 16 14 C -0.02 -1.20 5.29 84.66 0.45 -0.75 16 15 N -0.94 -59.32 13.69 21.45 0.29 -59.03 16 16 Si 1.08 50.07 26.29 68.60 1.80 51.87 16 17 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 18 H -0.24 -9.42 5.76 99.48 0.57 -8.85 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 C -0.11 -4.08 8.24 22.26 0.18 -3.90 16 21 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.06 1.45 8.09 -2.39 -0.02 1.43 16 23 H 0.09 1.48 8.08 -2.39 -0.02 1.46 16 24 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 25 H 0.40 9.86 9.06 -74.06 -0.67 9.19 16 26 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.05 2.03 4.89 -2.39 -0.01 2.02 16 28 H 0.04 1.78 7.17 -2.39 -0.02 1.77 16 29 H 0.25 16.08 8.73 -92.70 -0.81 15.27 16 30 H 0.12 4.60 7.53 -2.91 -0.02 4.58 16 Total: -1.00 -68.04 267.52 3.71 -64.33 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.32 Total: 12.22 kcal Atomic # 6 Polarization: -51.84 SS G_CDS: 2.46 Total: -49.37 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.29 Total: -59.03 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -1.09 Total: -18.33 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 1.80 Total: 51.87 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.68 kcal Total: -68.04 3.71 -64.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259747720.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.323 kcal (2) G-P(sol) polarization free energy of solvation -68.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds