Wall clock time and date at job start Thu Apr 9 2020 15:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38292 * 119.94388 * 2 1 4 4 C 1.38213 * 120.04723 * 180.02562 * 3 2 1 5 5 Cl 1.73598 * 120.04144 * 179.97438 * 4 3 2 6 6 C 1.38859 * 119.91879 * 359.76404 * 4 3 2 7 7 O 1.35923 * 120.05983 * 180.23256 * 6 4 3 8 8 C 1.38665 * 119.88041 * 0.48588 * 6 4 3 9 9 C 1.50700 * 120.01744 * 179.77141 * 8 6 4 10 10 H 1.08994 * 109.47551 * 359.72081 * 9 8 6 11 11 C 1.52996 * 109.47211 * 119.72579 * 9 8 6 12 12 C 1.50702 * 109.46869 * 239.72135 * 9 8 6 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 9 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 9 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 9 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.38187 * 119.95630 * 359.49420 * 8 6 4 21 21 H 1.08990 * 109.47584 * 269.98412 * 1 2 3 22 22 H 1.09002 * 109.46910 * 29.98558 * 1 2 3 23 23 H 1.08999 * 109.46936 * 149.97859 * 1 2 3 24 24 H 1.08003 * 119.97676 * 359.97438 * 3 2 1 25 25 H 0.96699 * 114.00366 * 270.26072 * 7 6 4 26 26 H 1.09003 * 109.47532 * 59.99881 * 11 9 8 27 27 H 1.09001 * 109.47094 * 179.97438 * 11 9 8 28 28 H 1.09003 * 109.46851 * 299.99806 * 11 9 8 29 29 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 30 30 H 1.08005 * 119.95669 * 180.25243 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5794 1.2008 -0.0005 5 17 4.4457 2.7052 -0.0012 6 6 4.2741 -0.0015 0.0039 7 8 5.6333 -0.0023 0.0081 8 6 3.5788 -1.2012 -0.0014 9 6 4.3297 -2.5078 -0.0018 10 1 5.4017 -2.3108 -0.0026 11 6 3.9593 -3.3093 1.2477 12 6 3.9632 -3.2973 -1.2320 13 1 3.2574 -2.8932 -1.9427 14 6 4.5336 -4.5330 -1.4534 15 7 5.3933 -5.0249 -0.5882 16 14 4.0850 -5.5082 -2.9821 17 1 3.1038 -4.7397 -3.7894 18 1 5.3071 -5.7521 -3.7899 19 1 3.4882 -6.8080 -2.5827 20 6 2.1969 -1.1978 -0.0004 21 1 -0.3634 -0.0003 1.0275 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 1.6559 2.1329 -0.0004 25 1 6.0295 -0.0002 -0.8740 26 1 2.8873 -3.5064 1.2484 27 1 4.5021 -4.2545 1.2471 28 1 4.2244 -2.7382 2.1374 29 1 5.7943 -5.8943 -0.7439 30 1 1.6553 -2.1322 -0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259747722.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:39 Heat of formation + Delta-G solvation = -61.837202 kcal Electronic energy + Delta-G solvation = -14998.101397 eV Core-core repulsion = 12396.948901 eV Total energy + Delta-G solvation = -2601.152496 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.95694 -37.82180 -37.52389 -36.28403 -33.47643 -32.27582 -30.00764 -27.23673 -27.20043 -24.60348 -22.69198 -21.12220 -19.28095 -18.36118 -17.11921 -16.86672 -16.51798 -15.99786 -14.97154 -14.75452 -14.55111 -14.40429 -13.57549 -13.44868 -13.41202 -13.03468 -12.88766 -12.86093 -12.67603 -12.31446 -12.13755 -11.95603 -11.94844 -11.72403 -11.02161 -10.98062 -10.46593 -9.49137 -9.25530 -8.09769 -6.24342 0.20780 0.38704 1.16344 1.40835 1.43629 1.54204 2.41862 2.65073 3.17924 3.35406 3.92142 4.06147 4.36318 4.42781 4.55871 4.81076 4.84606 4.91453 4.96613 5.12324 5.17071 5.22506 5.33425 5.41230 5.57494 5.66617 5.89552 6.00625 6.05498 6.32337 6.80363 6.85057 7.43834 8.95079 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.026340 B = 0.007698 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.755917 B = 3636.622920 C = 4111.003954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.082 4.082 3 C -0.117 4.117 4 C -0.063 4.063 5 Cl -0.063 7.063 6 C 0.079 3.921 7 O -0.496 6.496 8 C -0.069 4.069 9 C 0.075 3.925 10 H 0.014 0.986 11 C -0.121 4.121 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.015 3.985 15 N -0.916 5.916 16 Si 0.954 3.046 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.280 1.280 20 C -0.106 4.106 21 H 0.084 0.916 22 H 0.087 0.913 23 H 0.070 0.930 24 H 0.159 0.841 25 H 0.396 0.604 26 H 0.036 0.964 27 H 0.060 0.940 28 H 0.017 0.983 29 H 0.261 0.739 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.758 11.350 -0.085 13.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.083 4.083 3 C -0.135 4.135 4 C -0.090 4.090 5 Cl -0.034 7.034 6 C 0.034 3.966 7 O -0.307 6.307 8 C -0.070 4.070 9 C 0.057 3.943 10 H 0.032 0.968 11 C -0.179 4.179 12 C -0.557 4.557 13 H 0.072 0.928 14 C -0.184 4.184 15 N -0.556 5.556 16 Si 0.780 3.220 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.205 1.205 20 C -0.124 4.124 21 H 0.103 0.897 22 H 0.105 0.895 23 H 0.089 0.911 24 H 0.177 0.823 25 H 0.254 0.746 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.631 11.336 0.550 13.676 hybrid contribution 0.615 -0.758 -1.145 1.505 sum -7.016 10.578 -0.595 12.708 Atomic orbital electron populations 1.20815 0.87925 1.03974 1.03541 1.20202 0.98116 0.91343 0.98597 1.20980 0.90587 0.99519 1.02434 1.21410 0.93431 0.85994 1.08162 1.98320 1.77310 1.30760 1.97033 1.18239 0.83672 0.90667 1.04038 1.84753 1.15509 1.96128 1.34356 1.20775 0.95043 0.95187 0.95995 1.17630 0.94212 0.88005 0.94497 0.96789 1.21623 0.99525 1.01128 0.95580 1.21383 1.25517 1.02494 1.06322 0.92753 1.25716 0.94871 0.98563 0.99232 1.70036 1.29966 1.18793 1.36794 0.85557 0.78062 0.78597 0.79766 1.19056 1.20865 1.20540 1.21035 0.92853 0.98594 0.99933 0.89711 0.89455 0.91068 0.82345 0.74641 0.94529 0.92075 0.96437 0.92933 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 10.01 71.23 0.71 -1.45 16 2 C -0.08 -2.41 5.88 -19.85 -0.12 -2.53 16 3 C -0.12 -3.31 9.48 22.28 0.21 -3.10 16 4 C -0.06 -2.08 6.33 22.41 0.14 -1.94 16 5 Cl -0.06 -1.81 28.51 -2.72 -0.08 -1.89 16 6 C 0.08 3.12 6.67 22.52 0.15 3.27 16 7 O -0.50 -19.34 11.73 -92.68 -1.09 -20.43 16 8 C -0.07 -2.97 4.75 -19.77 -0.09 -3.07 16 9 C 0.08 3.79 2.44 -12.29 -0.03 3.76 16 10 H 0.01 0.78 6.99 -2.39 -0.02 0.77 16 11 C -0.12 -5.97 8.79 71.98 0.63 -5.34 16 12 C -0.52 -27.79 8.24 25.60 0.21 -27.58 16 13 H 0.05 2.87 7.60 -2.91 -0.02 2.85 16 14 C 0.01 0.81 5.31 84.66 0.45 1.26 16 15 N -0.92 -52.28 11.33 21.45 0.24 -52.04 16 16 Si 0.95 42.65 29.54 68.60 2.03 44.67 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 C -0.11 -3.94 8.36 22.26 0.19 -3.76 16 21 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 23 H 0.07 1.44 8.08 -2.39 -0.02 1.42 16 24 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 25 H 0.40 12.76 9.06 -74.06 -0.67 12.09 16 26 H 0.04 1.68 7.39 -2.39 -0.02 1.66 16 27 H 0.06 3.32 6.08 -2.39 -0.01 3.31 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 30 H 0.13 4.70 7.58 -2.91 -0.02 4.68 16 Total: -1.00 -61.17 272.19 4.04 -57.13 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.49 Total: 13.02 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 2.45 Total: -40.46 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.24 Total: -52.04 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -1.09 Total: -20.43 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.08 Total: -1.89 kcal Total: -61.17 4.04 -57.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259747722.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.711 kcal (2) G-P(sol) polarization free energy of solvation -61.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds