Wall clock time and date at job start Thu Apr 9 2020 15:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30658 * 1 3 3 Si 1.86807 * 119.99958 * 2 1 4 4 H 1.48497 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47057 * 300.00095 * 3 2 1 6 6 H 1.48500 * 109.46905 * 60.00550 * 3 2 1 7 7 C 1.40204 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00067 * 180.02562 * 7 2 1 9 9 C 1.40574 * 120.00101 * 359.97438 * 7 2 1 10 10 N 1.33750 * 120.46961 * 0.02562 * 9 7 2 11 11 C 1.31573 * 122.30966 * 179.97438 * 10 9 7 12 12 C 1.38117 * 122.58449 * 359.97208 * 11 10 9 13 13 C 1.40579 * 119.56072 * 0.30230 * 12 11 10 14 14 C 1.40654 * 121.97172 * 180.31653 * 13 12 11 15 15 C 1.36088 * 120.14373 * 179.74426 * 14 13 12 16 16 C 1.39614 * 120.94515 * 359.65873 * 15 14 13 17 17 O 1.35106 * 133.39170 * 180.02562 * 16 15 14 18 18 C 1.34159 * 108.18919 * 179.97438 * 17 16 15 19 19 N 1.30005 * 110.16527 * 0.02562 * 18 17 16 20 20 C 1.35693 * 108.82864 * 359.97438 * 19 18 17 21 21 C 1.40557 * 134.13321 * 180.02562 * 20 19 18 22 22 H 0.97002 * 119.99709 * 359.97438 * 1 2 3 23 23 H 1.08005 * 118.70688 * 179.97438 * 11 10 9 24 24 H 1.08002 * 120.21502 * 180.02562 * 12 11 10 25 25 H 1.08001 * 119.93015 * 359.44769 * 14 13 12 26 26 H 1.07997 * 119.52743 * 179.68517 * 15 14 13 27 27 H 1.07997 * 124.91313 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3464 -0.0006 5 1 1.8818 2.3965 -1.2125 6 1 1.8819 2.3964 1.2126 7 6 2.0076 -1.2142 -0.0005 8 1 3.0876 -1.2142 -0.0001 9 6 1.3048 -2.4316 -0.0005 10 7 -0.0327 -2.4426 -0.0005 11 6 -0.7267 -3.5604 -0.0010 12 6 -0.1304 -4.8062 -0.0022 13 6 1.2720 -4.9039 0.0036 14 6 1.9321 -6.1459 -0.0038 15 6 3.2920 -6.1970 -0.0031 16 6 4.0544 -5.0274 -0.0021 17 8 5.3837 -4.7860 -0.0017 18 6 5.5680 -3.4572 -0.0013 19 7 4.4208 -2.8456 -0.0009 20 6 3.4302 -3.7729 -0.0016 21 6 2.0263 -3.7053 -0.0021 22 1 -0.4850 0.8401 0.0004 23 1 -1.8052 -3.5014 -0.0006 24 1 -0.7376 -5.6994 -0.0030 25 1 1.3585 -7.0610 -0.0053 26 1 3.7886 -7.1561 -0.0036 27 1 6.5302 -2.9666 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259771599.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:40 Heat of formation + Delta-G solvation = 62.407235 kcal Electronic energy + Delta-G solvation = -16185.234377 eV Core-core repulsion = 13488.362030 eV Total energy + Delta-G solvation = -2696.872347 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.064 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.41378 -38.50372 -35.47299 -34.22545 -33.55286 -30.63984 -29.64967 -28.16382 -25.94303 -23.06751 -22.69885 -21.88028 -20.29676 -18.55218 -17.30802 -16.64930 -15.91448 -15.86132 -15.00322 -14.64261 -14.14643 -13.62949 -13.01976 -12.67203 -12.57440 -12.16457 -11.76631 -11.44372 -11.11279 -10.87207 -10.82260 -10.68045 -10.62942 -10.03456 -9.53424 -9.52331 -8.48560 -7.78089 -7.66280 -7.05388 -6.65822 -4.64974 1.30451 2.07120 2.64958 2.99253 3.02415 3.07439 3.31057 3.44945 3.79565 4.18249 4.64735 4.65796 5.34221 5.65557 5.79066 5.82441 5.87690 6.02231 6.20970 6.38158 6.59758 6.67889 6.82151 6.90178 6.94145 7.11149 7.26623 7.41935 7.66834 7.90545 8.23278 8.34636 8.42339 8.73938 9.91470 10.11825 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.022446 B = 0.010962 C = 0.007384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.166294 B = 2553.693582 C = 3791.016729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.682 5.682 2 C 0.053 3.947 3 Si 0.916 3.084 4 H -0.252 1.252 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.361 4.361 8 H 0.124 0.876 9 C 0.255 3.745 10 N -0.519 5.519 11 C 0.158 3.842 12 C -0.354 4.354 13 C 0.029 3.971 14 C -0.120 4.120 15 C -0.078 4.078 16 C -0.069 4.069 17 O -0.223 6.223 18 C 0.189 3.811 19 N -0.467 5.467 20 C 0.089 3.911 21 C -0.132 4.132 22 H 0.279 0.721 23 H 0.117 0.883 24 H 0.100 0.900 25 H 0.127 0.873 26 H 0.117 0.883 27 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.828 -3.520 0.001 6.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.300 5.300 2 C -0.176 4.176 3 Si 0.739 3.261 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.390 4.390 8 H 0.142 0.858 9 C 0.130 3.870 10 N -0.233 5.233 11 C -0.005 4.005 12 C -0.379 4.379 13 C 0.024 3.976 14 C -0.139 4.139 15 C -0.097 4.097 16 C -0.119 4.119 17 O -0.114 6.114 18 C -0.041 4.041 19 N -0.197 5.197 20 C -0.025 4.025 21 C -0.138 4.138 22 H 0.091 0.909 23 H 0.134 0.866 24 H 0.118 0.882 25 H 0.145 0.855 26 H 0.135 0.865 27 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 5.128 -1.927 0.002 5.479 hybrid contribution 0.900 -0.903 0.004 1.275 sum 6.028 -2.830 0.006 6.660 Atomic orbital electron populations 1.70149 1.07716 1.28765 1.23419 1.26429 0.95053 1.02106 0.93998 0.86096 0.81425 0.79779 0.78813 1.17456 1.19465 1.19462 1.20576 0.97106 0.88710 1.32617 0.85822 1.19717 0.88166 0.89875 0.89273 1.68726 1.06376 1.26368 1.21857 1.22282 0.98730 0.88659 0.90812 1.20979 0.92450 0.97937 1.26530 1.17659 0.93924 0.90993 0.95064 1.20633 0.92506 0.97274 1.03469 1.19237 0.92541 0.93847 1.04102 1.20183 0.80325 0.97413 1.13985 1.84315 1.25014 1.27692 1.74400 1.28073 0.99867 0.77302 0.98865 1.70481 0.97880 1.33238 1.18090 1.19338 0.93751 0.87430 1.01957 1.18998 0.88739 0.95494 1.10521 0.90934 0.86565 0.88181 0.85507 0.86507 0.74006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -17.47 11.49 55.56 0.64 -16.83 15 2 C 0.05 1.32 5.50 -17.31 -0.10 1.23 15 3 Si 0.92 18.07 29.56 -169.99 -5.03 13.05 15 4 H -0.25 -4.91 7.11 56.52 0.40 -4.51 15 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 7 C -0.36 -9.66 8.86 -37.96 -0.34 -9.99 15 8 H 0.12 3.21 5.32 -52.49 -0.28 2.93 15 9 C 0.26 7.09 6.72 -82.88 -0.56 6.54 15 10 N -0.52 -14.34 7.88 -9.89 -0.08 -14.42 15 11 C 0.16 3.87 11.08 -17.71 -0.20 3.67 15 12 C -0.35 -8.10 9.89 -38.74 -0.38 -8.48 15 13 C 0.03 0.68 5.75 -106.81 -0.61 0.07 15 14 C -0.12 -2.35 9.78 -39.44 -0.39 -2.74 15 15 C -0.08 -1.46 9.96 -39.84 -0.40 -1.86 15 16 C -0.07 -1.46 7.43 -38.36 -0.29 -1.75 15 17 O -0.22 -4.12 10.77 3.84 0.04 -4.08 15 18 C 0.19 3.15 13.13 51.99 0.68 3.84 15 19 N -0.47 -10.19 8.99 -12.43 -0.11 -10.30 15 20 C 0.09 2.13 6.75 -84.58 -0.57 1.56 15 21 C -0.13 -3.42 5.93 -104.46 -0.62 -4.04 15 22 H 0.28 6.34 8.29 -40.82 -0.34 6.01 15 23 H 0.12 2.49 8.06 -52.48 -0.42 2.07 15 24 H 0.10 1.98 8.06 -52.49 -0.42 1.56 15 25 H 0.13 2.03 8.06 -52.49 -0.42 1.61 15 26 H 0.12 1.77 8.06 -52.49 -0.42 1.35 15 27 H 0.24 2.46 8.06 -52.49 -0.42 2.04 15 LS Contribution 244.69 15.07 3.69 3.69 Total: -1.00 -31.24 244.69 -6.13 -37.38 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -1.53 Total: 3.49 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -3.76 Total: -11.97 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.45 Total: -41.56 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: 0.04 Total: -4.08 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.24 -6.13 -37.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259771599.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.783 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds