Wall clock time and date at job start Thu Apr 9 2020 15:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30658 * 1 3 3 Si 1.86807 * 119.99958 * 2 1 4 4 H 1.48497 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47057 * 300.00095 * 3 2 1 6 6 H 1.48500 * 109.46905 * 60.00550 * 3 2 1 7 7 C 1.40204 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00067 * 180.02562 * 7 2 1 9 9 C 1.40574 * 120.00101 * 359.97438 * 7 2 1 10 10 N 1.33750 * 120.46961 * 0.02562 * 9 7 2 11 11 C 1.31573 * 122.30966 * 179.97438 * 10 9 7 12 12 C 1.38117 * 122.58449 * 359.97208 * 11 10 9 13 13 C 1.40579 * 119.56072 * 0.30230 * 12 11 10 14 14 C 1.40654 * 121.97172 * 180.31653 * 13 12 11 15 15 C 1.36088 * 120.14373 * 179.74426 * 14 13 12 16 16 C 1.39614 * 120.94515 * 359.65873 * 15 14 13 17 17 O 1.35106 * 133.39170 * 180.02562 * 16 15 14 18 18 C 1.34159 * 108.18919 * 179.97438 * 17 16 15 19 19 N 1.30005 * 110.16527 * 0.02562 * 18 17 16 20 20 C 1.35693 * 108.82864 * 359.97438 * 19 18 17 21 21 C 1.40557 * 134.13321 * 180.02562 * 20 19 18 22 22 H 0.97002 * 119.99709 * 359.97438 * 1 2 3 23 23 H 1.08005 * 118.70688 * 179.97438 * 11 10 9 24 24 H 1.08002 * 120.21502 * 180.02562 * 12 11 10 25 25 H 1.08001 * 119.93015 * 359.44769 * 14 13 12 26 26 H 1.07997 * 119.52743 * 179.68517 * 15 14 13 27 27 H 1.07997 * 124.91313 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3464 -0.0006 5 1 1.8818 2.3965 -1.2125 6 1 1.8819 2.3964 1.2126 7 6 2.0076 -1.2142 -0.0005 8 1 3.0876 -1.2142 -0.0001 9 6 1.3048 -2.4316 -0.0005 10 7 -0.0327 -2.4426 -0.0005 11 6 -0.7267 -3.5604 -0.0010 12 6 -0.1304 -4.8062 -0.0022 13 6 1.2720 -4.9039 0.0036 14 6 1.9321 -6.1459 -0.0038 15 6 3.2920 -6.1970 -0.0031 16 6 4.0544 -5.0274 -0.0021 17 8 5.3837 -4.7860 -0.0017 18 6 5.5680 -3.4572 -0.0013 19 7 4.4208 -2.8456 -0.0009 20 6 3.4302 -3.7729 -0.0016 21 6 2.0263 -3.7053 -0.0021 22 1 -0.4850 0.8401 0.0004 23 1 -1.8052 -3.5014 -0.0006 24 1 -0.7376 -5.6994 -0.0030 25 1 1.3585 -7.0610 -0.0053 26 1 3.7886 -7.1561 -0.0036 27 1 6.5302 -2.9666 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259771599.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:40 Heat of formation + Delta-G solvation = 40.650158 kcal Electronic energy + Delta-G solvation = -16186.177834 eV Core-core repulsion = 13488.362030 eV Total energy + Delta-G solvation = -2697.815804 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.064 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.94647 -40.24828 -37.17171 -35.87144 -35.27161 -32.40473 -31.37149 -29.82241 -27.76837 -24.67116 -24.38699 -23.52426 -21.99381 -20.22763 -19.00927 -18.22193 -17.54850 -17.44502 -16.65607 -16.38128 -15.72491 -15.21162 -14.70311 -14.39353 -14.19196 -13.86797 -13.43813 -13.04531 -12.86289 -12.49561 -12.45407 -12.31510 -12.27276 -11.74302 -11.28801 -11.12862 -10.21819 -9.52249 -9.52036 -8.77805 -8.46365 -6.54942 -0.26186 0.33563 0.98038 1.36377 1.48236 1.55023 1.84474 1.87148 2.16991 2.44441 2.86590 3.32808 3.79024 3.89792 4.15282 4.24942 4.34325 4.38605 4.53863 4.76847 4.92241 5.01938 5.12447 5.23030 5.34215 5.50630 5.57976 5.70138 5.91240 6.14246 6.35360 6.51494 6.83629 6.91210 8.13457 8.27869 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.022446 B = 0.010962 C = 0.007384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.166294 B = 2553.693582 C = 3791.016729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.011 3.989 3 Si 0.993 3.007 4 H -0.250 1.250 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.402 4.402 8 H 0.123 0.877 9 C 0.226 3.774 10 N -0.557 5.557 11 C 0.128 3.872 12 C -0.344 4.344 13 C 0.004 3.996 14 C -0.117 4.117 15 C -0.067 4.067 16 C -0.073 4.073 17 O -0.214 6.214 18 C 0.222 3.778 19 N -0.518 5.518 20 C 0.056 3.944 21 C -0.174 4.174 22 H 0.287 0.713 23 H 0.136 0.864 24 H 0.134 0.866 25 H 0.169 0.831 26 H 0.164 0.836 27 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.007 -5.044 -0.001 9.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.214 4.214 3 Si 0.811 3.189 4 H -0.173 1.173 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.432 4.432 8 H 0.141 0.859 9 C 0.100 3.900 10 N -0.272 5.272 11 C -0.032 4.032 12 C -0.368 4.368 13 C -0.001 4.001 14 C -0.135 4.135 15 C -0.086 4.086 16 C -0.123 4.123 17 O -0.105 6.105 18 C -0.006 4.006 19 N -0.247 5.247 20 C -0.057 4.057 21 C -0.179 4.179 22 H 0.098 0.902 23 H 0.153 0.847 24 H 0.152 0.848 25 H 0.186 0.814 26 H 0.182 0.818 27 H 0.322 0.678 Dipole moment (debyes) X Y Z Total from point charges 7.275 -3.492 0.000 8.070 hybrid contribution 0.366 -0.658 0.005 0.753 sum 7.641 -4.150 0.005 8.695 Atomic orbital electron populations 1.70216 1.09291 1.30099 1.24877 1.27372 0.95853 1.05278 0.92873 0.84997 0.79717 0.74860 0.79319 1.17291 1.18433 1.18422 1.20811 0.97293 0.89739 1.35332 0.85942 1.20189 0.88718 0.91451 0.89683 1.68657 1.06944 1.28089 1.23537 1.22719 0.99749 0.89071 0.91674 1.21364 0.92918 0.98430 1.24133 1.18131 0.94357 0.92160 0.95433 1.21037 0.93217 0.96986 1.02219 1.19771 0.92289 0.95014 1.01542 1.20575 0.81215 0.97257 1.13264 1.84360 1.23517 1.28567 1.74063 1.29448 1.00693 0.76458 0.94035 1.70422 0.99087 1.34299 1.20893 1.19540 0.93674 0.89390 1.03115 1.19330 0.90367 0.95778 1.12474 0.90185 0.84684 0.84796 0.81364 0.81820 0.67834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -39.10 11.49 21.87 0.25 -38.85 15 2 C 0.01 0.58 5.50 85.35 0.47 1.04 15 3 Si 0.99 38.16 29.56 68.60 2.03 40.19 15 4 H -0.25 -9.36 7.11 99.48 0.71 -8.65 15 5 H -0.26 -9.45 7.11 99.48 0.71 -8.74 15 6 H -0.26 -9.44 7.11 99.48 0.71 -8.73 15 7 C -0.40 -22.68 8.86 23.32 0.21 -22.48 15 8 H 0.12 6.68 5.32 -2.91 -0.02 6.66 15 9 C 0.23 13.26 6.72 41.54 0.28 13.54 15 10 N -0.56 -32.47 7.88 -185.22 -1.46 -33.93 15 11 C 0.13 6.47 11.08 84.70 0.94 7.41 15 12 C -0.34 -15.65 9.89 22.81 0.23 -15.43 15 13 C 0.00 0.21 5.75 -21.28 -0.12 0.09 15 14 C -0.12 -4.20 9.78 22.36 0.22 -3.99 15 15 C -0.07 -2.28 9.96 22.10 0.22 -2.06 15 16 C -0.07 -2.90 7.43 23.06 0.17 -2.73 15 17 O -0.21 -7.16 10.77 -9.19 -0.10 -7.26 15 18 C 0.22 6.75 13.13 130.51 1.71 8.47 15 19 N -0.52 -22.34 8.99 -308.04 -2.77 -25.11 15 20 C 0.06 2.69 6.75 39.57 0.27 2.96 15 21 C -0.17 -9.30 5.93 -19.76 -0.12 -9.42 15 22 H 0.29 13.68 8.29 -92.71 -0.77 12.91 15 23 H 0.14 5.98 8.06 -2.91 -0.02 5.95 15 24 H 0.13 5.00 8.06 -2.91 -0.02 4.98 15 25 H 0.17 4.58 8.06 -2.91 -0.02 4.55 15 26 H 0.16 4.00 8.06 -2.91 -0.02 3.98 15 27 H 0.31 4.59 8.06 -2.91 -0.02 4.57 15 Total: -1.00 -73.72 244.69 3.64 -70.08 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 1.22 Total: 17.48 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 4.47 Total: -22.59 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -3.98 Total: -97.89 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.10 Total: -7.26 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -73.72 3.64 -70.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259771599.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.731 kcal (2) G-P(sol) polarization free energy of solvation -73.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds