Wall clock time and date at job start Thu Apr 9 2020 15:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50696 * 109.46893 * 2 1 4 4 C 1.38319 * 119.71511 * 99.99926 * 3 2 1 5 5 C 1.38364 * 120.19593 * 179.97438 * 4 3 2 6 6 O 1.35653 * 120.19486 * 180.02562 * 5 4 3 7 7 C 1.42901 * 117.00086 * 359.97438 * 6 5 4 8 8 C 1.41332 * 119.61234 * 0.26793 * 5 4 3 9 9 C 1.41158 * 120.28212 * 179.72867 * 8 5 4 10 10 H 1.07994 * 119.99623 * 24.55534 * 9 8 5 11 11 C 1.39929 * 120.00076 * 204.55147 * 9 8 5 12 12 N 1.30864 * 120.00113 * 17.62148 * 11 9 8 13 13 Si 1.86798 * 119.99998 * 197.61727 * 11 9 8 14 14 H 1.48504 * 109.47043 * 60.00396 * 13 11 9 15 15 H 1.48498 * 109.47380 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47295 * 300.00277 * 13 11 9 17 17 C 1.40704 * 119.44050 * 359.54950 * 8 5 4 18 18 C 1.37611 * 119.79293 * 0.40695 * 17 8 5 19 19 Cl 1.73602 * 119.80830 * 179.79071 * 18 17 8 20 20 H 1.08996 * 109.47077 * 60.00484 * 1 2 3 21 21 H 1.09000 * 109.46762 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47149 * 299.99944 * 1 2 3 23 23 H 1.08997 * 109.47149 * 240.00056 * 2 1 3 24 24 H 1.09002 * 109.46646 * 119.99499 * 2 1 3 25 25 H 1.08005 * 119.89989 * 359.97438 * 4 3 2 26 26 H 1.08995 * 109.47253 * 180.02562 * 7 6 5 27 27 H 1.09002 * 109.46582 * 60.00948 * 7 6 5 28 28 H 1.09000 * 109.47289 * 300.00950 * 7 6 5 29 29 H 0.97001 * 120.00356 * 179.97438 * 12 11 9 30 30 H 1.08002 * 120.10522 * 180.23180 * 17 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4575 1.9977 1.1831 5 6 2.9211 3.3013 1.1944 6 8 3.3385 3.8669 2.3546 7 6 3.2721 3.0586 3.5311 8 6 2.9522 4.0419 -0.0089 9 6 3.4170 5.3748 -0.0126 10 1 4.0979 5.7113 0.7552 11 6 2.9957 6.2600 -1.0110 12 7 1.9339 5.9841 -1.7245 13 14 3.9487 7.8355 -1.3254 14 1 5.3444 7.5019 -1.7075 15 1 3.3017 8.5943 -2.4258 16 1 3.9574 8.6632 -0.0924 17 6 2.5196 3.4382 -1.2040 18 6 2.0640 2.1398 -1.1882 19 17 1.5251 1.3964 -2.6614 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 2.4276 1.4289 2.1007 26 1 3.6341 3.6303 4.3856 27 1 3.8919 2.1718 3.3980 28 1 2.2395 2.7571 3.7071 29 1 1.6415 6.5979 -2.4164 30 1 2.5424 3.9930 -2.1303 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259780877.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:42 Heat of formation + Delta-G solvation = -58.666730 kcal Electronic energy + Delta-G solvation = -15042.619363 eV Core-core repulsion = 12441.604349 eV Total energy + Delta-G solvation = -2601.015014 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.57866 -38.38484 -36.87060 -36.04065 -33.89168 -30.84618 -30.39672 -28.04907 -26.96511 -24.01169 -22.73957 -21.67014 -19.40183 -17.92659 -17.46002 -16.62385 -16.26516 -16.14243 -15.15195 -15.06897 -14.54923 -14.28575 -14.11270 -13.52018 -13.29352 -12.88056 -12.81588 -12.72990 -12.54697 -12.35225 -12.09754 -11.96577 -11.80381 -11.63150 -11.19347 -11.04355 -10.91351 -9.38426 -8.83539 -8.56464 -6.24979 0.80403 0.91243 1.38650 1.48442 1.51924 1.60167 2.21920 2.64182 2.88549 3.54590 4.13841 4.24365 4.40914 4.47687 4.50971 4.66903 4.76477 4.85351 4.89246 5.04127 5.14934 5.19333 5.31444 5.37592 5.47737 5.69455 5.72768 5.97024 6.18085 6.37500 6.70982 6.85861 7.14951 8.32879 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.009912 C = 0.007086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.867972 B = 2824.114342 C = 3950.777145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C -0.164 4.164 4 C -0.165 4.165 5 C 0.010 3.990 6 O -0.336 6.336 7 C 0.024 3.976 8 C 0.065 3.935 9 C -0.479 4.479 10 H 0.075 0.925 11 C 0.034 3.966 12 N -0.823 5.823 13 Si 0.980 3.020 14 H -0.261 1.261 15 H -0.266 1.266 16 H -0.261 1.261 17 C -0.162 4.162 18 C -0.035 4.035 19 Cl -0.099 7.099 20 H 0.040 0.960 21 H 0.074 0.926 22 H 0.046 0.954 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.138 0.862 26 H 0.112 0.888 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.289 0.711 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.051 -6.363 3.689 7.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 C -0.166 4.166 4 C -0.184 4.184 5 C -0.034 4.034 6 O -0.251 6.251 7 C -0.071 4.071 8 C 0.062 3.938 9 C -0.508 4.508 10 H 0.093 0.907 11 C -0.181 4.181 12 N -0.449 5.449 13 Si 0.801 3.199 14 H -0.185 1.185 15 H -0.191 1.191 16 H -0.185 1.185 17 C -0.182 4.182 18 C -0.061 4.061 19 Cl -0.070 7.070 20 H 0.060 0.940 21 H 0.093 0.907 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.155 0.845 26 H 0.130 0.870 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.194 -6.147 3.414 7.034 hybrid contribution 0.124 0.629 -0.342 0.727 sum -0.069 -5.517 3.072 6.315 Atomic orbital electron populations 1.21707 0.94973 1.01837 1.01213 1.20280 0.96124 0.91159 1.02294 1.19219 1.08741 0.97886 0.90804 1.20744 1.05490 0.93921 0.98257 1.19429 1.04576 0.93564 0.85878 1.85926 1.81662 1.42340 1.15201 1.23131 1.01543 0.96429 0.85949 1.17266 0.94007 0.93873 0.88630 1.19522 1.25434 0.95008 1.10811 0.90678 1.26722 0.94316 1.03281 0.93775 1.69864 1.19255 1.38049 1.17736 0.85275 0.79163 0.76539 0.78913 1.18492 1.19060 1.18512 1.20893 1.06528 0.92650 0.98163 1.20617 1.05300 0.93901 0.86329 1.98228 1.89235 1.82759 1.36827 0.94045 0.90713 0.93449 0.91696 0.90460 0.84486 0.86976 0.92582 0.92979 0.90042 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.84 71.98 0.71 -3.44 16 2 C -0.06 -1.99 5.51 29.85 0.16 -1.82 16 3 C -0.16 -6.87 5.16 -19.68 -0.10 -6.97 16 4 C -0.17 -6.95 8.64 22.32 0.19 -6.76 16 5 C 0.01 0.51 6.72 23.06 0.15 0.66 16 6 O -0.34 -15.10 9.78 -89.68 -0.88 -15.98 16 7 C 0.02 0.74 9.81 113.37 1.11 1.86 16 8 C 0.07 3.57 5.58 -21.20 -0.12 3.45 16 9 C -0.48 -26.45 8.72 23.40 0.20 -26.24 16 10 H 0.08 4.12 7.65 -2.91 -0.02 4.10 16 11 C 0.03 1.74 5.14 85.25 0.44 2.17 16 12 N -0.82 -43.66 10.96 21.83 0.24 -43.42 16 13 Si 0.98 39.13 29.59 68.60 2.03 41.16 16 14 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 15 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 16 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 17 C -0.16 -8.60 8.45 22.72 0.19 -8.40 16 18 C -0.03 -1.63 6.30 22.28 0.14 -1.49 16 19 Cl -0.10 -3.96 26.54 -2.72 -0.07 -4.04 16 20 H 0.04 1.35 7.23 -2.39 -0.02 1.33 16 21 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.06 2.07 7.33 -2.39 -0.02 2.05 16 24 H 0.08 2.15 7.99 -2.39 -0.02 2.13 16 25 H 0.14 4.74 6.26 -2.91 -0.02 4.72 16 26 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.06 1.54 7.66 -2.39 -0.02 1.52 16 28 H 0.05 1.47 7.66 -2.39 -0.02 1.46 16 29 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 30 H 0.12 6.45 6.17 -2.91 -0.02 6.44 16 Total: -1.00 -60.27 268.73 5.55 -54.72 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 1.14 Total: 14.54 kcal Atomic # 6 Polarization: -50.07 SS G_CDS: 3.09 Total: -46.98 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.24 Total: -43.42 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.88 Total: -15.98 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Atomic # 17 Polarization: -3.96 SS G_CDS: -0.07 Total: -4.04 kcal Total: -60.27 5.55 -54.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259780877.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.945 kcal (2) G-P(sol) polarization free energy of solvation -60.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds