Wall clock time and date at job start Thu Apr 9 2020 15:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30981 * 1 3 3 Si 1.86803 * 120.00187 * 2 1 4 4 H 1.48494 * 109.47228 * 180.27528 * 3 2 1 5 5 H 1.48506 * 109.47130 * 300.27716 * 3 2 1 6 6 H 1.48501 * 109.46793 * 60.27505 * 3 2 1 7 7 C 1.39855 * 120.00037 * 180.27595 * 2 1 3 8 8 H 1.07999 * 120.00098 * 179.72668 * 7 2 1 9 9 C 1.39484 * 119.99426 * 359.72486 * 7 2 1 10 10 N 1.33480 * 125.63741 * 0.02562 * 9 7 2 11 11 C 1.32163 * 109.88533 * 179.97438 * 10 9 7 12 12 Cl 1.73598 * 125.96185 * 179.97438 * 11 10 9 13 13 C 1.39894 * 108.07085 * 0.02562 * 11 10 9 14 14 C 1.40113 * 133.39396 * 180.02562 * 13 11 10 15 15 F 1.35092 * 120.46321 * 359.97438 * 14 13 11 16 16 C 1.38139 * 119.07213 * 179.97438 * 14 13 11 17 17 C 1.40134 * 119.49422 * 359.97438 * 16 14 13 18 18 C 1.35409 * 120.41493 * 359.97438 * 17 16 14 19 19 N 1.36384 * 120.73532 * 359.78642 * 18 17 16 20 20 H 0.97000 * 120.00166 * 359.72682 * 1 2 3 21 21 H 1.08005 * 120.25054 * 180.02562 * 16 14 13 22 22 H 1.07993 * 119.79297 * 180.02562 * 17 16 14 23 23 H 1.08005 * 119.63244 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 3.7038 1.3464 -0.0067 5 1 1.8801 2.3994 -1.2091 6 1 1.8901 2.3935 1.2159 7 6 2.0091 -1.2112 -0.0058 8 1 3.0891 -1.2112 -0.0103 9 6 1.3116 -2.4191 -0.0058 10 7 -0.0168 -2.5501 -0.0011 11 6 -0.3422 -3.8310 -0.0033 12 17 -1.9550 -4.4732 0.0018 13 6 0.8400 -4.5790 -0.0092 14 6 1.1090 -5.9541 -0.0140 15 9 0.0978 -6.8498 -0.0129 16 6 2.4228 -6.3810 -0.0199 17 6 3.4559 -5.4342 -0.0215 18 6 3.1723 -4.1101 -0.0178 19 7 1.8800 -3.6741 -0.0168 20 1 -0.4850 0.8400 0.0040 21 1 2.6519 -7.4365 -0.0241 22 1 4.4847 -5.7626 -0.0265 23 1 3.9784 -3.3914 -0.0195 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259784196.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:43 Heat of formation + Delta-G solvation = 26.068006 kcal Electronic energy + Delta-G solvation = -14470.362590 eV Core-core repulsion = 11646.021302 eV Total energy + Delta-G solvation = -2824.341289 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 240.016 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.24452 -41.06271 -36.27641 -35.59417 -33.65267 -31.68043 -29.66718 -28.11673 -25.22296 -22.62656 -21.45708 -20.65663 -17.98330 -16.55895 -16.43074 -15.49054 -15.26967 -15.26675 -14.52181 -14.04272 -13.66137 -13.20426 -13.04250 -11.78999 -11.67355 -11.58594 -11.47402 -11.08670 -11.07039 -10.49555 -10.47539 -10.22185 -9.45080 -9.16413 -8.59187 -8.18434 -6.83145 -6.79668 -4.54890 1.59502 2.16002 2.84681 2.92848 2.97224 3.02131 3.69208 3.98384 4.04375 4.20339 5.00057 5.13855 5.38686 5.48668 5.67397 5.96749 6.44817 6.59624 6.67933 6.84945 6.93588 7.13582 7.49902 7.76593 7.85173 8.45251 8.68593 9.37701 10.07181 Molecular weight = 240.02amu Principal moments of inertia in cm(-1) A = 0.028296 B = 0.009532 C = 0.007148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.305906 B = 2936.844620 C = 3916.306465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.073 3.927 3 Si 0.925 3.075 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.431 4.431 8 H 0.093 0.907 9 C 0.379 3.621 10 N -0.466 5.466 11 C 0.122 3.878 12 Cl -0.040 7.040 13 C -0.139 4.139 14 C 0.171 3.829 15 F -0.134 7.134 16 C -0.222 4.222 17 C -0.164 4.164 18 C 0.080 3.920 19 N -0.414 5.414 20 H 0.282 0.718 21 H 0.124 0.876 22 H 0.133 0.867 23 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.408 -3.833 -0.009 5.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.153 4.153 3 Si 0.748 3.252 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.111 0.889 9 C 0.146 3.854 10 N -0.185 5.185 11 C -0.046 4.046 12 Cl -0.012 7.012 13 C -0.245 4.245 14 C 0.149 3.851 15 F -0.112 7.112 16 C -0.244 4.244 17 C -0.187 4.187 18 C -0.041 4.041 19 N -0.094 5.094 20 H 0.093 0.907 21 H 0.142 0.858 22 H 0.151 0.849 23 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.483 -3.035 -0.017 4.620 hybrid contribution 0.543 -0.250 0.001 0.598 sum 4.026 -3.285 -0.016 5.196 Atomic orbital electron populations 1.70107 1.07070 1.28968 1.28466 1.25835 0.95067 1.00978 0.93438 0.85983 0.80310 0.80038 0.78839 1.18316 1.19550 1.19546 1.18256 0.94399 0.87132 1.47109 0.88906 1.20093 0.85610 0.82655 0.97090 1.70859 1.09809 1.13088 1.24718 1.21175 0.83894 0.91343 1.08232 1.98271 1.20952 1.84665 1.97271 1.17903 0.88963 0.88742 1.28874 1.16715 0.84282 0.83780 1.00277 1.91432 1.59846 1.66389 1.93554 1.20693 0.90133 0.99735 1.13833 1.20054 0.98829 0.90877 1.08896 1.21321 0.85513 0.96007 1.01258 1.42562 1.03813 1.07149 1.55897 0.90711 0.85813 0.84906 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.57 11.86 55.55 0.66 -17.91 14 2 C 0.07 1.75 5.49 -17.31 -0.10 1.65 14 3 Si 0.92 17.31 29.56 -169.99 -5.02 12.28 14 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 14 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 14 6 H -0.27 -5.02 7.11 56.52 0.40 -4.61 14 7 C -0.43 -10.64 9.18 -38.51 -0.35 -10.99 14 8 H 0.09 2.06 7.67 -52.49 -0.40 1.65 14 9 C 0.38 9.99 7.47 -155.14 -1.16 8.83 14 10 N -0.47 -12.94 9.29 -9.10 -0.08 -13.02 14 11 C 0.12 3.12 7.83 -16.79 -0.13 2.99 14 12 Cl -0.04 -0.87 28.93 -51.86 -1.50 -2.37 14 13 C -0.14 -3.37 6.79 -83.83 -0.57 -3.93 14 14 C 0.17 3.64 7.38 -38.91 -0.29 3.36 14 15 F -0.13 -2.73 16.89 2.25 0.04 -2.69 14 16 C -0.22 -4.05 10.13 -38.91 -0.39 -4.44 14 17 C -0.16 -2.78 9.98 -39.88 -0.40 -3.18 14 18 C 0.08 1.55 10.81 -16.54 -0.18 1.37 14 19 N -0.41 -9.86 2.99 -60.15 -0.18 -10.04 14 20 H 0.28 6.49 8.30 -40.82 -0.34 6.16 14 21 H 0.12 1.89 8.06 -52.48 -0.42 1.47 14 22 H 0.13 1.72 8.06 -52.49 -0.42 1.30 14 23 H 0.15 2.44 7.89 -52.48 -0.41 2.03 14 LS Contribution 235.89 15.07 3.55 3.55 Total: -1.00 -28.55 235.89 -6.90 -35.45 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -0.80 Total: -0.91 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -3.57 Total: -4.35 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.39 Total: -40.97 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.04 Total: -2.69 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.02 Total: 12.28 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.55 -6.90 -35.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259784196.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.521 kcal (2) G-P(sol) polarization free energy of solvation -28.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds