Wall clock time and date at job start Thu Apr 9 2020 15:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30981 * 1 3 3 Si 1.86803 * 120.00187 * 2 1 4 4 H 1.48494 * 109.47228 * 180.27528 * 3 2 1 5 5 H 1.48506 * 109.47130 * 300.27716 * 3 2 1 6 6 H 1.48501 * 109.46793 * 60.27505 * 3 2 1 7 7 C 1.39855 * 120.00037 * 180.27595 * 2 1 3 8 8 H 1.07999 * 120.00098 * 179.72668 * 7 2 1 9 9 C 1.39484 * 119.99426 * 359.72486 * 7 2 1 10 10 N 1.33480 * 125.63741 * 0.02562 * 9 7 2 11 11 C 1.32163 * 109.88533 * 179.97438 * 10 9 7 12 12 Cl 1.73598 * 125.96185 * 179.97438 * 11 10 9 13 13 C 1.39894 * 108.07085 * 0.02562 * 11 10 9 14 14 C 1.40113 * 133.39396 * 180.02562 * 13 11 10 15 15 F 1.35092 * 120.46321 * 359.97438 * 14 13 11 16 16 C 1.38139 * 119.07213 * 179.97438 * 14 13 11 17 17 C 1.40134 * 119.49422 * 359.97438 * 16 14 13 18 18 C 1.35409 * 120.41493 * 359.97438 * 17 16 14 19 19 N 1.36384 * 120.73532 * 359.78642 * 18 17 16 20 20 H 0.97000 * 120.00166 * 359.72682 * 1 2 3 21 21 H 1.08005 * 120.25054 * 180.02562 * 16 14 13 22 22 H 1.07993 * 119.79297 * 180.02562 * 17 16 14 23 23 H 1.08005 * 119.63244 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 3.7038 1.3464 -0.0067 5 1 1.8801 2.3994 -1.2091 6 1 1.8901 2.3935 1.2159 7 6 2.0091 -1.2112 -0.0058 8 1 3.0891 -1.2112 -0.0103 9 6 1.3116 -2.4191 -0.0058 10 7 -0.0168 -2.5501 -0.0011 11 6 -0.3422 -3.8310 -0.0033 12 17 -1.9550 -4.4732 0.0018 13 6 0.8400 -4.5790 -0.0092 14 6 1.1090 -5.9541 -0.0140 15 9 0.0978 -6.8498 -0.0129 16 6 2.4228 -6.3810 -0.0199 17 6 3.4559 -5.4342 -0.0215 18 6 3.1723 -4.1101 -0.0178 19 7 1.8800 -3.6741 -0.0168 20 1 -0.4850 0.8400 0.0040 21 1 2.6519 -7.4365 -0.0241 22 1 4.4847 -5.7626 -0.0265 23 1 3.9784 -3.3914 -0.0195 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259784196.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:43 Heat of formation + Delta-G solvation = 10.125963 kcal Electronic energy + Delta-G solvation = -14471.053889 eV Core-core repulsion = 11646.021302 eV Total energy + Delta-G solvation = -2825.032587 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 240.016 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.80301 -42.81953 -37.93914 -37.31817 -35.38609 -33.38361 -31.36921 -29.82796 -26.93708 -24.25336 -23.15887 -22.44920 -19.65653 -18.19659 -18.13236 -17.12444 -16.94294 -16.88226 -16.13931 -15.75325 -15.20112 -14.86850 -14.59937 -13.39123 -13.38628 -13.09648 -13.01977 -12.82503 -12.57552 -12.12136 -12.02541 -11.86416 -11.13611 -10.85375 -10.42396 -9.92827 -8.54808 -8.52513 -6.34271 -0.00479 0.50582 1.09507 1.44848 1.47295 1.62300 2.10052 2.33622 2.34034 2.52779 3.33668 3.42441 3.86724 4.05009 4.10608 4.37695 4.83038 5.06083 5.14378 5.23606 5.29246 5.43541 5.83670 6.03675 6.15330 6.68693 6.94603 7.58483 8.39724 Molecular weight = 240.02amu Principal moments of inertia in cm(-1) A = 0.028296 B = 0.009532 C = 0.007148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.305906 B = 2936.844620 C = 3916.306465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.028 3.972 3 Si 1.006 2.994 4 H -0.243 1.243 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.457 4.457 8 H 0.112 0.888 9 C 0.343 3.657 10 N -0.508 5.508 11 C 0.066 3.934 12 Cl -0.029 7.029 13 C -0.131 4.131 14 C 0.119 3.881 15 F -0.135 7.135 16 C -0.173 4.173 17 C -0.147 4.147 18 C 0.057 3.943 19 N -0.415 5.415 20 H 0.285 0.715 21 H 0.167 0.833 22 H 0.190 0.810 23 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.702 -5.031 -0.022 9.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.193 4.193 3 Si 0.825 3.175 4 H -0.165 1.165 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.496 4.496 8 H 0.130 0.870 9 C 0.108 3.892 10 N -0.228 5.228 11 C -0.100 4.100 12 Cl -0.001 7.001 13 C -0.238 4.238 14 C 0.098 3.902 15 F -0.113 7.113 16 C -0.195 4.195 17 C -0.168 4.168 18 C -0.063 4.063 19 N -0.093 5.093 20 H 0.095 0.905 21 H 0.184 0.816 22 H 0.207 0.793 23 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 6.778 -4.287 -0.030 8.020 hybrid contribution -0.312 -0.217 0.003 0.380 sum 6.466 -4.504 -0.027 7.880 Atomic orbital electron populations 1.70244 1.09191 1.30053 1.30741 1.26924 0.95704 1.04579 0.92111 0.84799 0.79446 0.74695 0.78558 1.16537 1.19442 1.19415 1.18707 0.95352 0.87256 1.48257 0.87013 1.20492 0.85818 0.83968 0.98958 1.70705 1.11273 1.14556 1.26292 1.21442 0.85223 0.91337 1.11972 1.98237 1.20105 1.84315 1.97421 1.18429 0.88857 0.90250 1.26291 1.16949 0.85810 0.82791 1.04625 1.91422 1.60119 1.65845 1.93932 1.21447 0.88728 1.02327 1.06960 1.20795 1.01194 0.89360 1.05497 1.22178 0.84480 0.98179 1.01455 1.42870 1.05329 1.06553 1.54589 0.90479 0.81564 0.79254 0.80305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -41.85 11.86 21.82 0.26 -41.59 14 2 C 0.03 1.36 5.49 85.21 0.47 1.83 14 3 Si 1.01 35.57 29.56 68.60 2.03 37.60 14 4 H -0.24 -7.79 7.11 99.48 0.71 -7.08 14 5 H -0.27 -9.36 7.11 99.48 0.71 -8.65 14 6 H -0.27 -9.34 7.11 99.48 0.71 -8.63 14 7 C -0.46 -22.92 9.18 22.96 0.21 -22.71 14 8 H 0.11 4.87 7.67 -2.91 -0.02 4.84 14 9 C 0.34 18.59 7.47 133.24 1.00 19.59 14 10 N -0.51 -29.64 9.29 -182.71 -1.70 -31.34 14 11 C 0.07 3.48 7.83 85.04 0.67 4.15 14 12 Cl -0.03 -1.32 28.93 -2.72 -0.08 -1.40 14 13 C -0.13 -6.34 6.79 39.05 0.27 -6.07 14 14 C 0.12 4.86 7.38 22.70 0.17 5.03 14 15 F -0.13 -5.34 16.89 44.97 0.76 -4.58 14 16 C -0.17 -5.41 10.13 22.71 0.23 -5.18 14 17 C -0.15 -4.13 9.98 22.08 0.22 -3.91 14 18 C 0.06 2.01 10.81 83.33 0.90 2.92 14 19 N -0.41 -19.54 2.99 -344.23 -1.03 -20.57 14 20 H 0.28 13.83 8.30 -92.71 -0.77 13.06 14 21 H 0.17 3.88 8.06 -2.91 -0.02 3.86 14 22 H 0.19 3.30 8.06 -2.91 -0.02 3.27 14 23 H 0.18 5.13 7.89 -2.91 -0.02 5.10 14 Total: -1.00 -66.07 235.89 5.62 -60.45 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 1.26 Total: 5.78 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 4.12 Total: -4.34 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -2.47 Total: -93.51 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.76 Total: -4.58 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -66.07 5.62 -60.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259784196.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.574 kcal (2) G-P(sol) polarization free energy of solvation -66.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds