Wall clock time and date at job start Thu Apr 9 2020 15:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.47132 * 2 1 4 4 C 1.46903 * 111.00184 * 64.25173 * 3 2 1 5 5 C 1.52998 * 109.46992 * 65.32737 * 4 3 2 6 6 C 1.46907 * 110.99993 * 300.29708 * 3 2 1 7 7 H 1.09006 * 108.84713 * 56.86493 * 6 3 2 8 8 C 1.50465 * 108.87417 * 298.40303 * 6 3 2 9 9 C 1.54249 * 108.52439 * 145.07389 * 8 6 3 10 10 C 1.45537 * 112.40252 * 79.97730 * 9 8 6 11 11 C 1.54241 * 112.41307 * 298.06697 * 10 9 8 12 12 C 1.50464 * 108.51849 * 79.99179 * 11 10 9 13 13 C 1.54063 * 112.49936 * 265.85184 * 12 11 10 14 14 H 1.09002 * 108.81548 * 280.85604 * 13 12 11 15 15 C 1.50697 * 108.81837 * 162.57712 * 13 12 11 16 16 H 1.07997 * 120.00180 * 241.99419 * 15 13 12 17 17 C 1.37881 * 120.00018 * 61.98735 * 15 13 12 18 18 N 1.31509 * 119.99946 * 5.37232 * 17 15 13 19 19 Si 1.86796 * 120.00096 * 185.36976 * 17 15 13 20 20 H 1.48501 * 109.47366 * 94.99657 * 19 17 15 21 21 H 1.48501 * 109.47235 * 215.00076 * 19 17 15 22 22 H 1.48500 * 109.47086 * 334.99890 * 19 17 15 23 23 H 1.09000 * 109.46938 * 184.40983 * 1 2 3 24 24 H 1.08993 * 109.47096 * 304.41812 * 1 2 3 25 25 H 1.09004 * 109.46437 * 64.41815 * 1 2 3 26 26 H 1.08996 * 109.47193 * 239.99765 * 2 1 3 27 27 H 1.09006 * 109.46513 * 119.99548 * 2 1 3 28 28 H 1.09001 * 109.47226 * 185.32959 * 4 3 2 29 29 H 1.09003 * 109.46812 * 305.33065 * 4 3 2 30 30 H 1.09005 * 109.47128 * 64.64717 * 5 4 3 31 31 H 1.09005 * 109.47091 * 184.64122 * 5 4 3 32 32 H 1.08996 * 109.47482 * 304.64525 * 5 4 3 33 33 H 1.09003 * 109.62794 * 264.78334 * 8 6 3 34 34 H 1.08998 * 109.63334 * 25.36219 * 8 6 3 35 35 H 1.08995 * 108.89338 * 319.22687 * 9 8 6 36 36 H 1.08995 * 108.81567 * 200.68050 * 9 8 6 37 37 H 1.09000 * 108.89761 * 177.30956 * 10 9 8 38 38 H 1.09002 * 108.81837 * 58.76784 * 10 9 8 39 39 H 1.09005 * 109.62223 * 320.28270 * 11 10 9 40 40 H 1.08998 * 109.79206 * 199.79980 * 11 10 9 41 41 H 1.08995 * 108.88194 * 145.07201 * 12 11 10 42 42 H 1.09004 * 108.79984 * 26.57001 * 12 11 10 43 43 H 0.97003 * 120.00224 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6335 2.0800 1.2353 5 6 2.3368 1.4289 2.4279 6 6 1.5429 2.1120 -1.1842 7 1 0.4538 2.0725 -1.2067 8 6 2.0782 1.4371 -2.4179 9 6 1.0164 1.5391 -3.5321 10 6 1.0211 2.8395 -4.1855 11 6 0.6854 3.9879 -3.2121 12 6 1.9234 4.3256 -2.4264 13 6 1.9864 3.5836 -1.0777 14 1 1.3396 4.0948 -0.3646 15 6 3.4023 3.6285 -0.5638 16 1 3.9541 2.7113 -0.4204 17 6 3.9934 4.8406 -0.2768 18 7 3.2896 5.9491 -0.3501 19 14 5.7939 4.9083 0.2160 20 1 6.6251 5.1884 -0.9823 21 1 5.9925 5.9854 1.2189 22 1 6.1957 3.6049 0.8034 23 1 -0.3633 -1.0246 0.0790 24 1 -0.3633 0.5808 0.8477 25 1 -0.3632 0.4438 -0.9270 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.9256 3.1280 1.1690 29 1 0.5538 2.0113 1.3684 30 1 3.4138 1.5699 2.3359 31 1 1.9877 1.8902 3.3517 32 1 2.1102 0.3629 2.4458 33 1 2.9942 1.9335 -2.7385 34 1 2.2830 0.3885 -2.2021 35 1 0.0317 1.3657 -3.0981 36 1 1.2138 0.7687 -4.2774 37 1 0.2861 2.8328 -4.9903 38 1 2.0089 3.0153 -4.6115 39 1 -0.1053 3.6718 -2.5317 40 1 0.3576 4.8632 -3.7730 41 1 1.9405 5.3993 -2.2393 42 1 2.7989 4.0572 -3.0177 43 1 3.7056 6.8020 -0.1486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259805636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:45 Heat of formation + Delta-G solvation = -6.016498 kcal Electronic energy + Delta-G solvation = -19311.099135 eV Core-core repulsion = 16776.875988 eV Total energy + Delta-G solvation = -2534.223148 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.17529 -36.24121 -33.30620 -31.18973 -30.67343 -30.25677 -27.26998 -25.57685 -23.90896 -22.63654 -21.96726 -19.87951 -19.63610 -17.77555 -16.15340 -15.55280 -15.07232 -14.26123 -14.19750 -13.90466 -13.61261 -12.90071 -12.75830 -12.56956 -12.51436 -12.17288 -11.85014 -11.61892 -11.37822 -11.04307 -10.87640 -10.73811 -10.69326 -10.57848 -10.44475 -10.09847 -10.00088 -9.90984 -9.78728 -9.33395 -9.14996 -8.77207 -8.59046 -8.14912 -7.19606 -5.84473 -3.80744 3.40014 3.47749 3.52750 4.58605 4.76951 5.32524 5.38088 5.47867 5.52844 5.59106 5.74008 5.82431 5.91379 6.02769 6.08116 6.10028 6.15886 6.17925 6.26489 6.27541 6.33717 6.41704 6.52680 6.55373 6.59125 6.66899 6.70356 6.86146 6.93504 6.96849 7.12176 7.14160 7.26892 7.28438 7.50534 7.87641 7.98582 8.10472 8.20239 8.25749 8.69873 9.27478 9.80160 11.24864 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.017767 B = 0.012165 C = 0.008330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.607054 B = 2301.057482 C = 3360.336348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 N -0.510 5.510 4 C 0.046 3.954 5 C -0.142 4.142 6 C 0.101 3.899 7 H 0.014 0.986 8 C -0.108 4.108 9 C -0.111 4.111 10 C -0.113 4.113 11 C -0.118 4.118 12 C -0.102 4.102 13 C 0.054 3.946 14 H 0.022 0.978 15 C -0.481 4.481 16 H 0.072 0.928 17 C 0.054 3.946 18 N -0.899 5.899 19 Si 0.881 3.119 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.274 1.274 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.013 0.987 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.041 0.959 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.095 -8.492 -1.803 10.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.089 4.089 3 N -0.233 5.233 4 C -0.081 4.081 5 C -0.200 4.200 6 C -0.007 4.007 7 H 0.032 0.968 8 C -0.146 4.146 9 C -0.149 4.149 10 C -0.151 4.151 11 C -0.155 4.155 12 C -0.141 4.141 13 C 0.035 3.965 14 H 0.040 0.960 15 C -0.519 4.519 16 H 0.090 0.910 17 C -0.145 4.145 18 N -0.540 5.540 19 Si 0.710 3.290 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.199 1.199 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.128 0.872 29 H 0.031 0.969 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.545 -8.313 -1.778 9.640 hybrid contribution 0.057 0.180 0.301 0.355 sum -4.489 -8.133 -1.477 9.406 Atomic orbital electron populations 1.22429 0.99645 1.00919 1.02013 1.22283 0.91941 0.93140 1.01574 1.62210 1.58567 1.00154 1.02370 1.22200 0.95244 1.01872 0.88788 1.21758 1.01890 0.99221 0.97104 1.21506 0.94368 0.96467 0.88363 0.96806 1.21443 0.98955 0.99856 0.94318 1.20439 0.99232 0.97089 0.98147 1.20476 1.00853 0.95803 0.97965 1.21469 1.00191 0.96295 0.97563 1.21322 0.93803 1.02330 0.96614 1.19185 0.97099 0.87220 0.92990 0.95961 1.21285 0.97664 0.92410 1.40554 0.90993 1.24974 0.97118 0.96119 0.96275 1.69955 1.35321 0.97798 1.50892 0.86740 0.86755 0.77469 0.77995 1.21277 1.21865 1.19889 0.93386 0.92694 0.92548 0.91191 0.91569 0.87173 0.96923 0.92049 0.93613 0.93989 0.90522 0.92525 0.93352 0.93561 0.94068 0.92451 0.93122 0.93856 0.91178 0.93881 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.78 9.20 37.16 0.34 -2.44 16 2 C 0.04 0.62 5.58 -3.82 -0.02 0.60 16 3 N -0.51 -9.80 3.39 -227.49 -0.77 -10.57 16 4 C 0.05 0.90 4.81 -3.82 -0.02 0.88 16 5 C -0.14 -2.41 9.93 37.16 0.37 -2.05 16 6 C 0.10 1.99 0.89 -68.42 -0.06 1.93 16 7 H 0.01 0.28 4.67 -51.93 -0.24 0.04 16 8 C -0.11 -1.97 5.06 -27.34 -0.14 -2.10 16 9 C -0.11 -1.77 5.26 -29.60 -0.16 -1.93 16 10 C -0.11 -1.86 5.26 -29.60 -0.16 -2.02 16 11 C -0.12 -2.20 5.61 -27.35 -0.15 -2.36 16 12 C -0.10 -2.31 4.24 -27.44 -0.12 -2.43 16 13 C 0.05 1.26 1.16 -90.66 -0.11 1.15 16 14 H 0.02 0.59 7.11 -51.93 -0.37 0.22 16 15 C -0.48 -12.44 5.99 -34.44 -0.21 -12.65 16 16 H 0.07 1.93 7.07 -52.49 -0.37 1.56 16 17 C 0.05 1.48 5.25 -17.82 -0.09 1.38 16 18 N -0.90 -25.40 11.89 55.43 0.66 -24.74 16 19 Si 0.88 21.49 29.54 -169.99 -5.02 16.47 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.83 6.20 -51.93 -0.32 0.51 16 25 H 0.06 0.86 6.54 -51.93 -0.34 0.52 16 26 H 0.07 1.08 5.92 -51.93 -0.31 0.77 16 27 H 0.07 1.00 6.17 -51.93 -0.32 0.68 16 28 H 0.11 2.55 5.04 -51.93 -0.26 2.29 16 29 H 0.01 0.24 6.09 -51.93 -0.32 -0.08 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.64 6.24 -51.93 -0.32 0.31 16 33 H 0.08 1.57 6.76 -51.93 -0.35 1.22 16 34 H 0.06 0.97 5.50 -51.93 -0.29 0.68 16 35 H 0.05 0.76 7.44 -51.93 -0.39 0.37 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.97 7.46 -51.93 -0.39 0.58 16 39 H 0.05 0.95 6.97 -51.93 -0.36 0.59 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.79 6.92 -51.93 -0.36 1.43 16 42 H 0.04 1.01 6.45 -51.93 -0.34 0.67 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 300.10 15.07 4.52 4.52 Total: -1.00 -26.62 300.10 -8.44 -35.06 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.31 Total: 1.28 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -0.51 Total: -22.02 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.11 Total: -35.31 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -26.62 -8.44 -35.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259805636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.044 kcal (2) G-P(sol) polarization free energy of solvation -26.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds