Wall clock time and date at job start Thu Apr 9 2020 15:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.47132 * 2 1 4 4 C 1.46903 * 111.00184 * 64.25173 * 3 2 1 5 5 C 1.52998 * 109.46992 * 65.32737 * 4 3 2 6 6 C 1.46907 * 110.99993 * 300.29708 * 3 2 1 7 7 H 1.09006 * 108.84713 * 56.86493 * 6 3 2 8 8 C 1.50465 * 108.87417 * 298.40303 * 6 3 2 9 9 C 1.54249 * 108.52439 * 145.07389 * 8 6 3 10 10 C 1.45537 * 112.40252 * 79.97730 * 9 8 6 11 11 C 1.54241 * 112.41307 * 298.06697 * 10 9 8 12 12 C 1.50464 * 108.51849 * 79.99179 * 11 10 9 13 13 C 1.54063 * 112.49936 * 265.85184 * 12 11 10 14 14 H 1.09002 * 108.81548 * 280.85604 * 13 12 11 15 15 C 1.50697 * 108.81837 * 162.57712 * 13 12 11 16 16 H 1.07997 * 120.00180 * 241.99419 * 15 13 12 17 17 C 1.37881 * 120.00018 * 61.98735 * 15 13 12 18 18 N 1.31509 * 119.99946 * 5.37232 * 17 15 13 19 19 Si 1.86796 * 120.00096 * 185.36976 * 17 15 13 20 20 H 1.48501 * 109.47366 * 94.99657 * 19 17 15 21 21 H 1.48501 * 109.47235 * 215.00076 * 19 17 15 22 22 H 1.48500 * 109.47086 * 334.99890 * 19 17 15 23 23 H 1.09000 * 109.46938 * 184.40983 * 1 2 3 24 24 H 1.08993 * 109.47096 * 304.41812 * 1 2 3 25 25 H 1.09004 * 109.46437 * 64.41815 * 1 2 3 26 26 H 1.08996 * 109.47193 * 239.99765 * 2 1 3 27 27 H 1.09006 * 109.46513 * 119.99548 * 2 1 3 28 28 H 1.09001 * 109.47226 * 185.32959 * 4 3 2 29 29 H 1.09003 * 109.46812 * 305.33065 * 4 3 2 30 30 H 1.09005 * 109.47128 * 64.64717 * 5 4 3 31 31 H 1.09005 * 109.47091 * 184.64122 * 5 4 3 32 32 H 1.08996 * 109.47482 * 304.64525 * 5 4 3 33 33 H 1.09003 * 109.62794 * 264.78334 * 8 6 3 34 34 H 1.08998 * 109.63334 * 25.36219 * 8 6 3 35 35 H 1.08995 * 108.89338 * 319.22687 * 9 8 6 36 36 H 1.08995 * 108.81567 * 200.68050 * 9 8 6 37 37 H 1.09000 * 108.89761 * 177.30956 * 10 9 8 38 38 H 1.09002 * 108.81837 * 58.76784 * 10 9 8 39 39 H 1.09005 * 109.62223 * 320.28270 * 11 10 9 40 40 H 1.08998 * 109.79206 * 199.79980 * 11 10 9 41 41 H 1.08995 * 108.88194 * 145.07201 * 12 11 10 42 42 H 1.09004 * 108.79984 * 26.57001 * 12 11 10 43 43 H 0.97003 * 120.00224 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6335 2.0800 1.2353 5 6 2.3368 1.4289 2.4279 6 6 1.5429 2.1120 -1.1842 7 1 0.4538 2.0725 -1.2067 8 6 2.0782 1.4371 -2.4179 9 6 1.0164 1.5391 -3.5321 10 6 1.0211 2.8395 -4.1855 11 6 0.6854 3.9879 -3.2121 12 6 1.9234 4.3256 -2.4264 13 6 1.9864 3.5836 -1.0777 14 1 1.3396 4.0948 -0.3646 15 6 3.4023 3.6285 -0.5638 16 1 3.9541 2.7113 -0.4204 17 6 3.9934 4.8406 -0.2768 18 7 3.2896 5.9491 -0.3501 19 14 5.7939 4.9083 0.2160 20 1 6.6251 5.1884 -0.9823 21 1 5.9925 5.9854 1.2189 22 1 6.1957 3.6049 0.8034 23 1 -0.3633 -1.0246 0.0790 24 1 -0.3633 0.5808 0.8477 25 1 -0.3632 0.4438 -0.9270 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.9256 3.1280 1.1690 29 1 0.5538 2.0113 1.3684 30 1 3.4138 1.5699 2.3359 31 1 1.9877 1.8902 3.3517 32 1 2.1102 0.3629 2.4458 33 1 2.9942 1.9335 -2.7385 34 1 2.2830 0.3885 -2.2021 35 1 0.0317 1.3657 -3.0981 36 1 1.2138 0.7687 -4.2774 37 1 0.2861 2.8328 -4.9903 38 1 2.0089 3.0153 -4.6115 39 1 -0.1053 3.6718 -2.5317 40 1 0.3576 4.8632 -3.7730 41 1 1.9405 5.3993 -2.2393 42 1 2.7989 4.0572 -3.0177 43 1 3.7056 6.8020 -0.1486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259805636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:44 Heat of formation + Delta-G solvation = -19.841348 kcal Electronic energy + Delta-G solvation = -19311.698626 eV Core-core repulsion = 16776.875988 eV Total energy + Delta-G solvation = -2534.822638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.72090 -37.69260 -35.18689 -32.72544 -32.40434 -31.67901 -28.74906 -27.37269 -25.43250 -24.27331 -23.54093 -21.35190 -21.12321 -19.49714 -17.86906 -17.30829 -16.70002 -16.06180 -15.64266 -15.28704 -15.15002 -14.58619 -14.23766 -14.07816 -13.91813 -13.75524 -13.26581 -13.13339 -12.88842 -12.79508 -12.58061 -12.49527 -12.25644 -12.10376 -12.06741 -11.87517 -11.39203 -11.37397 -11.29927 -10.90648 -10.86094 -10.55902 -10.50808 -10.20430 -8.70283 -7.94927 -5.95118 1.41558 1.44753 1.54045 2.53857 3.28083 3.40498 3.97124 4.04051 4.21804 4.31326 4.39873 4.48325 4.51492 4.59398 4.66540 4.70042 4.76430 4.78325 4.81868 4.87993 4.88733 5.00963 5.09908 5.19920 5.22533 5.30806 5.32942 5.41429 5.44489 5.47523 5.52681 5.54405 5.63432 5.72227 5.77926 5.90334 6.10734 6.12596 6.51425 6.66067 6.79427 7.17164 7.67627 9.13435 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.017767 B = 0.012165 C = 0.008330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.607054 B = 2301.057482 C = 3360.336348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.039 3.961 3 N -0.529 5.529 4 C 0.051 3.949 5 C -0.134 4.134 6 C 0.111 3.889 7 H 0.017 0.983 8 C -0.104 4.104 9 C -0.107 4.107 10 C -0.109 4.109 11 C -0.113 4.113 12 C -0.090 4.090 13 C 0.056 3.944 14 H -0.017 1.017 15 C -0.470 4.470 16 H 0.063 0.937 17 C 0.006 3.994 18 N -0.929 5.929 19 Si 0.933 3.067 20 H -0.285 1.285 21 H -0.294 1.294 22 H -0.269 1.269 23 H 0.074 0.926 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.020 0.980 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.031 0.969 42 H 0.028 0.972 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.764 -11.065 -2.515 12.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.089 4.089 3 N -0.252 5.252 4 C -0.077 4.077 5 C -0.191 4.191 6 C 0.003 3.997 7 H 0.035 0.965 8 C -0.142 4.142 9 C -0.145 4.145 10 C -0.146 4.146 11 C -0.151 4.151 12 C -0.129 4.129 13 C 0.038 3.962 14 H 0.001 0.999 15 C -0.508 4.508 16 H 0.081 0.919 17 C -0.190 4.190 18 N -0.571 5.571 19 Si 0.762 3.238 20 H -0.212 1.212 21 H -0.221 1.221 22 H -0.194 1.194 23 H 0.093 0.907 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.210 -10.905 -2.491 12.340 hybrid contribution 0.248 0.968 0.560 1.145 sum -4.962 -9.937 -1.931 11.274 Atomic orbital electron populations 1.22339 0.98268 1.02386 1.01251 1.22360 0.93078 0.90779 1.02639 1.62172 1.59473 1.01782 1.01791 1.22023 0.95876 0.99633 0.90163 1.21682 1.00317 1.00598 0.96525 1.21299 0.94419 0.94148 0.89826 0.96519 1.21399 0.98538 1.00081 0.94193 1.20412 0.98647 0.97539 0.97891 1.20428 1.01377 0.94845 0.97959 1.21391 0.97859 0.98078 0.97769 1.21119 0.95466 0.99720 0.96583 1.19100 0.95035 0.89868 0.92231 0.99895 1.21436 0.98616 0.91670 1.39116 0.91887 1.25586 1.00252 0.96133 0.97060 1.70088 1.36492 0.98020 1.52550 0.85908 0.83077 0.77324 0.77511 1.21167 1.22071 1.19407 0.90708 0.93604 0.93193 0.90219 0.90413 0.91823 0.96209 0.93857 0.92287 0.91613 0.93246 0.90925 0.92463 0.90718 0.91022 0.93139 0.93223 0.92911 0.94998 0.95280 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.75 9.20 71.98 0.66 -4.09 16 2 C 0.04 1.13 5.58 86.31 0.48 1.61 16 3 N -0.53 -19.88 3.39 -873.63 -2.96 -22.84 16 4 C 0.05 1.98 4.81 86.30 0.41 2.40 16 5 C -0.13 -4.40 9.93 71.98 0.72 -3.68 16 6 C 0.11 4.35 0.89 44.45 0.04 4.39 16 7 H 0.02 0.66 4.67 -2.38 -0.01 0.65 16 8 C -0.10 -3.62 5.06 30.20 0.15 -3.46 16 9 C -0.11 -3.06 5.26 28.74 0.15 -2.90 16 10 C -0.11 -3.29 5.26 28.74 0.15 -3.14 16 11 C -0.11 -4.18 5.61 30.19 0.17 -4.01 16 12 C -0.09 -4.22 4.24 30.13 0.13 -4.09 16 13 C 0.06 2.74 1.16 -10.82 -0.01 2.73 16 14 H -0.02 -0.96 7.11 -2.39 -0.02 -0.98 16 15 C -0.47 -25.14 5.99 25.60 0.15 -24.98 16 16 H 0.06 3.44 7.07 -2.91 -0.02 3.42 16 17 C 0.01 0.32 5.25 84.66 0.44 0.76 16 18 N -0.93 -54.92 11.89 21.45 0.26 -54.67 16 19 Si 0.93 45.25 29.54 68.60 2.03 47.28 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 21 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 22 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 23 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.04 1.27 6.20 -2.39 -0.01 1.25 16 25 H 0.05 1.36 6.54 -2.38 -0.02 1.34 16 26 H 0.08 2.17 5.92 -2.39 -0.01 2.16 16 27 H 0.08 2.08 6.17 -2.38 -0.01 2.07 16 28 H 0.06 3.08 5.04 -2.39 -0.01 3.07 16 29 H 0.02 0.73 6.09 -2.39 -0.01 0.72 16 30 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.07 1.83 6.24 -2.39 -0.01 1.82 16 33 H 0.05 1.98 6.76 -2.39 -0.02 1.97 16 34 H 0.07 2.27 5.50 -2.39 -0.01 2.26 16 35 H 0.06 1.57 7.44 -2.39 -0.02 1.55 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 1.61 7.46 -2.39 -0.02 1.59 16 39 H 0.05 1.83 6.97 -2.38 -0.02 1.82 16 40 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.03 1.70 6.92 -2.39 -0.02 1.68 16 42 H 0.03 1.40 6.45 -2.38 -0.02 1.38 16 43 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -59.70 300.10 3.94 -55.76 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.97 Total: 12.96 kcal Atomic # 6 Polarization: -42.14 SS G_CDS: 3.65 Total: -38.49 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -2.71 Total: -77.51 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -59.70 3.94 -55.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259805636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.923 kcal (2) G-P(sol) polarization free energy of solvation -59.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds