Wall clock time and date at job start Thu Apr 9 2020 15:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46898 * 109.47071 * 2 1 4 4 C 1.46895 * 111.00322 * 71.90561 * 3 2 1 5 5 C 1.53001 * 109.47488 * 198.44423 * 4 3 2 6 6 C 1.46905 * 110.99968 * 195.86272 * 3 2 1 7 7 H 1.09005 * 109.78436 * 190.41770 * 6 3 2 8 8 C 1.54238 * 109.62598 * 310.90263 * 6 3 2 9 9 C 1.45548 * 112.40403 * 199.70854 * 8 6 3 10 10 C 1.54237 * 112.40212 * 298.05986 * 9 8 6 11 11 C 1.50470 * 108.52863 * 79.98223 * 10 9 8 12 12 C 1.54001 * 112.54825 * 265.93384 * 11 10 9 13 13 C 1.50466 * 109.63000 * 69.92538 * 6 3 2 14 14 H 1.08999 * 108.87842 * 266.81570 * 13 6 3 15 15 C 1.50700 * 108.88144 * 25.36009 * 13 6 3 16 16 H 1.08003 * 119.99872 * 7.31875 * 15 13 6 17 17 C 1.37871 * 120.00414 * 187.32394 * 15 13 6 18 18 N 1.31517 * 119.99910 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00298 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47380 * 59.99502 * 19 17 15 21 21 H 1.48493 * 109.47534 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46888 * 299.99738 * 19 17 15 23 23 H 1.08997 * 109.47063 * 183.82581 * 1 2 3 24 24 H 1.08994 * 109.46695 * 303.82593 * 1 2 3 25 25 H 1.08994 * 109.46661 * 63.82809 * 1 2 3 26 26 H 1.08998 * 109.47065 * 239.99525 * 2 1 3 27 27 H 1.09007 * 109.47028 * 119.99708 * 2 1 3 28 28 H 1.09000 * 109.46994 * 318.44476 * 4 3 2 29 29 H 1.09004 * 109.47075 * 78.44607 * 4 3 2 30 30 H 1.09001 * 109.46790 * 62.60150 * 5 4 3 31 31 H 1.09004 * 109.47460 * 182.60492 * 5 4 3 32 32 H 1.09000 * 109.46954 * 302.60544 * 5 4 3 33 33 H 1.08995 * 108.89545 * 320.46129 * 8 6 3 34 34 H 1.08996 * 108.89640 * 78.95408 * 8 6 3 35 35 H 1.08998 * 108.89985 * 58.82094 * 9 8 6 36 36 H 1.09010 * 108.89038 * 177.30751 * 9 8 6 37 37 H 1.09001 * 109.62707 * 199.69379 * 10 9 8 38 38 H 1.09003 * 109.62712 * 320.26960 * 10 9 8 39 39 H 1.09001 * 108.87761 * 26.63046 * 11 10 9 40 40 H 1.08996 * 108.87590 * 145.07304 * 11 10 9 41 41 H 1.08999 * 108.71560 * 280.73583 * 12 11 10 42 42 H 1.09001 * 108.87295 * 162.48527 * 12 11 10 43 43 H 0.97000 * 119.99964 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7936 2.0233 1.3035 5 6 1.8756 3.5432 1.1482 6 6 3.4390 1.4416 -0.3749 7 1 3.8293 2.4428 -0.1918 8 6 4.2356 0.4149 0.4560 9 6 5.6600 0.7124 0.4877 10 6 6.3007 0.6698 -0.9146 11 6 5.9977 1.9648 -1.6184 12 6 4.7396 1.8763 -2.5021 13 6 3.5910 1.0983 -1.8319 14 1 3.7878 0.0301 -1.9239 15 6 2.3032 1.4193 -2.5456 16 1 1.5110 1.9359 -2.0239 17 6 2.1360 1.0535 -3.8643 18 7 3.1007 0.4248 -4.4997 19 14 0.5399 1.4522 -4.7491 20 1 0.3312 2.9224 -4.7554 21 1 0.6118 0.9570 -6.1472 22 1 -0.5921 0.7945 -4.0482 23 1 -0.3633 -1.0253 0.0686 24 1 -0.3632 0.5721 0.8537 25 1 -0.3632 0.4533 -0.9223 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 0.8068 1.7489 1.6762 29 1 2.5544 1.6887 2.0088 30 1 1.0854 3.8831 0.4788 31 1 1.7539 4.0152 2.1232 32 1 2.8459 3.8141 0.7320 33 1 3.8526 0.4133 1.4764 34 1 4.0914 -0.5759 0.0252 35 1 5.8038 1.7063 0.9115 36 1 6.1588 -0.0170 1.1261 37 1 7.3798 0.5480 -0.8206 38 1 5.8837 -0.1619 -1.4826 39 1 5.8483 2.7451 -0.8722 40 1 6.8496 2.2347 -2.2424 41 1 5.0025 1.3797 -3.4361 42 1 4.3956 2.8856 -2.7280 43 1 2.9830 0.1672 -5.4274 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259805638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:47 Heat of formation + Delta-G solvation = -10.463227 kcal Electronic energy + Delta-G solvation = -19299.893889 eV Core-core repulsion = 16765.477916 eV Total energy + Delta-G solvation = -2534.415972 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.17682 -35.89814 -33.15984 -31.20789 -31.01879 -30.42113 -27.31846 -25.29166 -23.55559 -22.31789 -22.13219 -20.91260 -19.04112 -17.86752 -16.20535 -15.13395 -14.93997 -14.43980 -14.04369 -13.88654 -13.53704 -13.26813 -13.18453 -12.64377 -12.26041 -11.84703 -11.76180 -11.45846 -11.21442 -10.99643 -10.93734 -10.82259 -10.80659 -10.62737 -10.44347 -10.06591 -10.01670 -9.86376 -9.72674 -9.49732 -9.29031 -8.85056 -8.53415 -8.08997 -7.12730 -5.77050 -3.73129 3.44986 3.49457 3.53153 4.62662 4.76355 5.27692 5.34439 5.54138 5.56731 5.63726 5.76937 5.78695 5.94958 6.00424 6.03869 6.11496 6.14301 6.19059 6.23110 6.33409 6.37850 6.43167 6.48932 6.53981 6.61597 6.68826 6.73018 6.83209 6.88630 6.93110 6.96166 7.01103 7.24233 7.28678 7.53097 7.89579 7.97301 8.15193 8.25297 8.31920 8.79653 9.38792 9.88428 11.32630 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.012353 C = 0.008695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.113878 B = 2266.150612 C = 3219.647070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.061 3.939 3 N -0.500 5.500 4 C 0.040 3.960 5 C -0.142 4.142 6 C 0.103 3.897 7 H 0.066 0.934 8 C -0.149 4.149 9 C -0.104 4.104 10 C -0.113 4.113 11 C -0.121 4.121 12 C -0.099 4.099 13 C 0.054 3.946 14 H 0.024 0.976 15 C -0.478 4.478 16 H 0.081 0.919 17 C 0.051 3.949 18 N -0.903 5.903 19 Si 0.883 3.117 20 H -0.281 1.281 21 H -0.295 1.295 22 H -0.280 1.280 23 H 0.044 0.956 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.012 0.988 28 H 0.063 0.937 29 H 0.022 0.978 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.042 0.958 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.271 0.974 9.999 10.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.067 4.067 3 N -0.223 5.223 4 C -0.088 4.088 5 C -0.199 4.199 6 C -0.005 4.005 7 H 0.084 0.916 8 C -0.188 4.188 9 C -0.142 4.142 10 C -0.150 4.150 11 C -0.159 4.159 12 C -0.138 4.138 13 C 0.035 3.965 14 H 0.042 0.958 15 C -0.517 4.517 16 H 0.099 0.901 17 C -0.148 4.148 18 N -0.544 5.544 19 Si 0.712 3.288 20 H -0.207 1.207 21 H -0.221 1.221 22 H -0.206 1.206 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.030 0.970 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.057 0.943 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.013 1.167 9.470 9.595 hybrid contribution -0.353 -0.278 0.014 0.450 sum 0.660 0.889 9.484 9.548 Atomic orbital electron populations 1.21760 0.96450 0.99913 1.01917 1.21924 0.94731 0.89724 1.00278 1.62361 1.18166 1.16620 1.25120 1.22143 0.99681 0.95278 0.91684 1.21720 1.02572 0.95508 1.00129 1.21563 0.84568 0.96636 0.97749 0.91577 1.21210 0.96218 1.01660 0.99715 1.20350 0.96233 1.00449 0.97195 1.21296 0.98305 0.99780 0.95664 1.21474 0.99346 0.96221 0.98829 1.21944 0.92661 1.00132 0.99051 1.18485 0.94202 0.95753 0.88012 0.95752 1.21467 1.00332 1.35175 0.94757 0.90091 1.25012 0.95792 0.96054 0.97902 1.69944 1.32118 1.41661 1.10717 0.86817 0.85052 0.78473 0.78451 1.20745 1.22096 1.20617 0.93681 0.93934 0.91648 0.89091 0.97003 0.91894 0.95978 0.92137 0.93781 0.92704 0.93961 0.92290 0.93147 0.93814 0.93597 0.91149 0.93938 0.94315 0.90954 0.94323 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 10.03 37.16 0.37 -2.05 16 2 C 0.06 1.14 3.97 -3.82 -0.02 1.13 16 3 N -0.50 -9.58 2.41 -227.38 -0.55 -10.13 16 4 C 0.04 0.65 5.40 -3.83 -0.02 0.63 16 5 C -0.14 -2.15 10.04 37.16 0.37 -1.78 16 6 C 0.10 2.04 1.56 -68.33 -0.11 1.93 16 7 H 0.07 1.34 5.30 -51.93 -0.28 1.06 16 8 C -0.15 -2.62 3.44 -29.60 -0.10 -2.72 16 9 C -0.10 -1.67 5.26 -29.60 -0.16 -1.83 16 10 C -0.11 -1.95 5.61 -27.35 -0.15 -2.10 16 11 C -0.12 -2.26 5.31 -27.47 -0.15 -2.41 16 12 C -0.10 -2.27 4.81 -25.65 -0.12 -2.40 16 13 C 0.05 1.27 0.75 -92.48 -0.07 1.20 16 14 H 0.02 0.64 6.35 -51.93 -0.33 0.31 16 15 C -0.48 -12.49 6.68 -34.44 -0.23 -12.72 16 16 H 0.08 2.15 6.44 -52.48 -0.34 1.81 16 17 C 0.05 1.40 5.32 -17.82 -0.09 1.30 16 18 N -0.90 -25.80 11.84 55.43 0.66 -25.14 16 19 Si 0.88 21.72 29.54 -169.99 -5.02 16.70 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.65 6.43 -51.93 -0.33 0.31 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.09 1.97 6.42 -51.93 -0.33 1.64 16 27 H 0.01 0.21 7.29 -51.93 -0.38 -0.17 16 28 H 0.06 0.96 6.21 -51.93 -0.32 0.63 16 29 H 0.02 0.35 6.44 -51.93 -0.33 0.01 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.88 6.63 -51.93 -0.34 0.53 16 33 H 0.04 0.70 6.19 -51.93 -0.32 0.38 16 34 H 0.06 1.11 7.09 -51.93 -0.37 0.74 16 35 H 0.05 0.78 7.47 -51.93 -0.39 0.39 16 36 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.36 6.98 -51.93 -0.36 1.00 16 39 H 0.04 0.75 6.63 -51.93 -0.34 0.41 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.86 6.90 -51.93 -0.36 1.50 16 42 H 0.04 0.92 7.97 -51.93 -0.41 0.51 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -26.93 305.34 -8.42 -35.35 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.64 Total: 0.43 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -0.47 Total: -21.81 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.11 Total: -35.27 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.93 -8.42 -35.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259805638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.888 kcal (2) G-P(sol) polarization free energy of solvation -26.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds