Wall clock time and date at job start Thu Apr 9 2020 15:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46898 * 109.47071 * 2 1 4 4 C 1.46895 * 111.00322 * 71.90561 * 3 2 1 5 5 C 1.53001 * 109.47488 * 198.44423 * 4 3 2 6 6 C 1.46905 * 110.99968 * 195.86272 * 3 2 1 7 7 H 1.09005 * 109.78436 * 190.41770 * 6 3 2 8 8 C 1.54238 * 109.62598 * 310.90263 * 6 3 2 9 9 C 1.45548 * 112.40403 * 199.70854 * 8 6 3 10 10 C 1.54237 * 112.40212 * 298.05986 * 9 8 6 11 11 C 1.50470 * 108.52863 * 79.98223 * 10 9 8 12 12 C 1.54001 * 112.54825 * 265.93384 * 11 10 9 13 13 C 1.50466 * 109.63000 * 69.92538 * 6 3 2 14 14 H 1.08999 * 108.87842 * 266.81570 * 13 6 3 15 15 C 1.50700 * 108.88144 * 25.36009 * 13 6 3 16 16 H 1.08003 * 119.99872 * 7.31875 * 15 13 6 17 17 C 1.37871 * 120.00414 * 187.32394 * 15 13 6 18 18 N 1.31517 * 119.99910 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00298 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47380 * 59.99502 * 19 17 15 21 21 H 1.48493 * 109.47534 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46888 * 299.99738 * 19 17 15 23 23 H 1.08997 * 109.47063 * 183.82581 * 1 2 3 24 24 H 1.08994 * 109.46695 * 303.82593 * 1 2 3 25 25 H 1.08994 * 109.46661 * 63.82809 * 1 2 3 26 26 H 1.08998 * 109.47065 * 239.99525 * 2 1 3 27 27 H 1.09007 * 109.47028 * 119.99708 * 2 1 3 28 28 H 1.09000 * 109.46994 * 318.44476 * 4 3 2 29 29 H 1.09004 * 109.47075 * 78.44607 * 4 3 2 30 30 H 1.09001 * 109.46790 * 62.60150 * 5 4 3 31 31 H 1.09004 * 109.47460 * 182.60492 * 5 4 3 32 32 H 1.09000 * 109.46954 * 302.60544 * 5 4 3 33 33 H 1.08995 * 108.89545 * 320.46129 * 8 6 3 34 34 H 1.08996 * 108.89640 * 78.95408 * 8 6 3 35 35 H 1.08998 * 108.89985 * 58.82094 * 9 8 6 36 36 H 1.09010 * 108.89038 * 177.30751 * 9 8 6 37 37 H 1.09001 * 109.62707 * 199.69379 * 10 9 8 38 38 H 1.09003 * 109.62712 * 320.26960 * 10 9 8 39 39 H 1.09001 * 108.87761 * 26.63046 * 11 10 9 40 40 H 1.08996 * 108.87590 * 145.07304 * 11 10 9 41 41 H 1.08999 * 108.71560 * 280.73583 * 12 11 10 42 42 H 1.09001 * 108.87295 * 162.48527 * 12 11 10 43 43 H 0.97000 * 119.99964 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7936 2.0233 1.3035 5 6 1.8756 3.5432 1.1482 6 6 3.4390 1.4416 -0.3749 7 1 3.8293 2.4428 -0.1918 8 6 4.2356 0.4149 0.4560 9 6 5.6600 0.7124 0.4877 10 6 6.3007 0.6698 -0.9146 11 6 5.9977 1.9648 -1.6184 12 6 4.7396 1.8763 -2.5021 13 6 3.5910 1.0983 -1.8319 14 1 3.7878 0.0301 -1.9239 15 6 2.3032 1.4193 -2.5456 16 1 1.5110 1.9359 -2.0239 17 6 2.1360 1.0535 -3.8643 18 7 3.1007 0.4248 -4.4997 19 14 0.5399 1.4522 -4.7491 20 1 0.3312 2.9224 -4.7554 21 1 0.6118 0.9570 -6.1472 22 1 -0.5921 0.7945 -4.0482 23 1 -0.3633 -1.0253 0.0686 24 1 -0.3632 0.5721 0.8537 25 1 -0.3632 0.4533 -0.9223 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 0.8068 1.7489 1.6762 29 1 2.5544 1.6887 2.0088 30 1 1.0854 3.8831 0.4788 31 1 1.7539 4.0152 2.1232 32 1 2.8459 3.8141 0.7320 33 1 3.8526 0.4133 1.4764 34 1 4.0914 -0.5759 0.0252 35 1 5.8038 1.7063 0.9115 36 1 6.1588 -0.0170 1.1261 37 1 7.3798 0.5480 -0.8206 38 1 5.8837 -0.1619 -1.4826 39 1 5.8483 2.7451 -0.8722 40 1 6.8496 2.2347 -2.2424 41 1 5.0025 1.3797 -3.4361 42 1 4.3956 2.8856 -2.7280 43 1 2.9830 0.1672 -5.4274 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259805638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:46 Heat of formation + Delta-G solvation = -23.716646 kcal Electronic energy + Delta-G solvation = -19300.468600 eV Core-core repulsion = 16765.477916 eV Total energy + Delta-G solvation = -2534.990684 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.71945 -37.35460 -35.07099 -32.60481 -32.53274 -32.16677 -28.80682 -27.14496 -25.12864 -23.92526 -23.65944 -22.32353 -20.54816 -19.55805 -18.05918 -16.89734 -16.52190 -15.99643 -15.68706 -15.36157 -14.98670 -14.87659 -14.59392 -14.16526 -14.05375 -13.30701 -13.15102 -12.95911 -12.82509 -12.66317 -12.61399 -12.50757 -12.27414 -12.22660 -12.03587 -11.72936 -11.53749 -11.33712 -11.24526 -11.09012 -11.02925 -10.66851 -10.47642 -10.16370 -8.60805 -7.89190 -5.89320 1.44808 1.45289 1.51939 2.56893 3.30380 3.44925 3.86708 3.99098 4.24027 4.26764 4.36904 4.47126 4.53686 4.55541 4.65847 4.69408 4.74826 4.78746 4.89777 4.95345 4.98051 4.99406 5.07406 5.11135 5.24388 5.27696 5.33481 5.39187 5.43103 5.47185 5.50460 5.52200 5.57265 5.62763 5.74737 5.97761 6.13516 6.19161 6.55068 6.69833 6.86030 7.27355 7.74651 9.18885 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.012353 C = 0.008695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.113878 B = 2266.150612 C = 3219.647070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.066 3.934 3 N -0.523 5.523 4 C 0.041 3.959 5 C -0.138 4.138 6 C 0.110 3.890 7 H 0.066 0.934 8 C -0.139 4.139 9 C -0.103 4.103 10 C -0.111 4.111 11 C -0.113 4.113 12 C -0.092 4.092 13 C 0.061 3.939 14 H -0.010 1.010 15 C -0.472 4.472 16 H 0.077 0.923 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.933 3.067 20 H -0.279 1.279 21 H -0.298 1.298 22 H -0.275 1.275 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.037 0.963 26 H 0.049 0.951 27 H 0.030 0.970 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.038 0.962 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.035 0.965 42 H 0.018 0.982 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 1.664 12.673 12.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.062 4.062 3 N -0.246 5.246 4 C -0.086 4.086 5 C -0.195 4.195 6 C 0.001 3.999 7 H 0.085 0.915 8 C -0.178 4.178 9 C -0.141 4.141 10 C -0.149 4.149 11 C -0.150 4.150 12 C -0.131 4.131 13 C 0.042 3.958 14 H 0.008 0.992 15 C -0.511 4.511 16 H 0.095 0.905 17 C -0.195 4.195 18 N -0.576 5.576 19 Si 0.762 3.238 20 H -0.205 1.205 21 H -0.225 1.225 22 H -0.200 1.200 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.037 0.963 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.044 1.865 12.158 12.345 hybrid contribution -0.384 -0.489 -0.805 1.017 sum 0.659 1.376 11.353 11.455 Atomic orbital electron populations 1.21699 0.95076 1.01196 1.01381 1.21799 0.95789 0.89504 0.99068 1.62252 1.17683 1.17020 1.27653 1.22215 1.00782 0.95502 0.90123 1.21695 1.01365 0.95021 1.01446 1.21330 0.85853 0.97184 0.95494 0.91548 1.21083 0.97194 0.99668 0.99839 1.20343 0.95009 1.02109 0.96610 1.21270 1.00050 0.97524 0.96013 1.21373 0.97195 0.97785 0.98693 1.21762 0.94732 0.98071 0.98555 1.18367 0.93165 0.93566 0.90677 0.99239 1.21758 1.01225 1.33515 0.94623 0.90535 1.25639 0.98197 0.96667 0.98960 1.70090 1.33639 1.43318 1.10556 0.85999 0.82379 0.78206 0.77255 1.20476 1.22471 1.20023 0.91945 0.91755 0.94363 0.93203 0.95237 0.90553 0.94730 0.93499 0.90771 0.93852 0.92111 0.94280 0.91586 0.91346 0.90792 0.94156 0.92276 0.93234 0.94652 0.96270 0.94290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 10.03 71.98 0.72 -3.70 16 2 C 0.07 2.43 3.97 86.31 0.34 2.77 16 3 N -0.52 -19.47 2.41 -873.31 -2.11 -21.58 16 4 C 0.04 1.21 5.40 86.30 0.47 1.68 16 5 C -0.14 -3.81 10.04 71.98 0.72 -3.08 16 6 C 0.11 4.27 1.56 44.51 0.07 4.34 16 7 H 0.07 2.58 5.30 -2.38 -0.01 2.57 16 8 C -0.14 -4.62 3.44 28.74 0.10 -4.53 16 9 C -0.10 -2.99 5.26 28.74 0.15 -2.84 16 10 C -0.11 -3.66 5.61 30.19 0.17 -3.49 16 11 C -0.11 -4.11 5.31 30.11 0.16 -3.95 16 12 C -0.09 -4.37 4.81 31.29 0.15 -4.22 16 13 C 0.06 2.94 0.75 -12.00 -0.01 2.93 16 14 H -0.01 -0.58 6.35 -2.39 -0.02 -0.59 16 15 C -0.47 -25.40 6.68 25.60 0.17 -25.23 16 16 H 0.08 4.14 6.44 -2.91 -0.02 4.12 16 17 C 0.00 0.03 5.32 84.65 0.45 0.48 16 18 N -0.93 -55.74 11.84 21.45 0.25 -55.48 16 19 Si 0.93 45.73 29.54 68.60 2.03 47.76 16 20 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 21 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 22 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 23 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.06 1.79 6.43 -2.39 -0.02 1.78 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 2.23 6.42 -2.39 -0.02 2.21 16 27 H 0.03 0.97 7.29 -2.38 -0.02 0.95 16 28 H 0.08 2.04 6.21 -2.39 -0.01 2.02 16 29 H 0.03 0.95 6.44 -2.38 -0.02 0.93 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.29 6.63 -2.39 -0.02 1.27 16 33 H 0.06 1.81 6.19 -2.39 -0.01 1.79 16 34 H 0.04 1.45 7.09 -2.39 -0.02 1.44 16 35 H 0.07 1.76 7.47 -2.39 -0.02 1.74 16 36 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.04 1.57 6.98 -2.39 -0.02 1.55 16 39 H 0.06 1.97 6.63 -2.39 -0.02 1.95 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.03 1.90 6.90 -2.39 -0.02 1.88 16 42 H 0.02 0.93 7.97 -2.39 -0.02 0.91 16 43 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -60.30 305.34 4.79 -55.50 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.96 Total: 12.62 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 3.67 Total: -38.83 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -1.85 Total: -77.06 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -60.30 4.79 -55.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259805638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.786 kcal (2) G-P(sol) polarization free energy of solvation -60.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds