Wall clock time and date at job start Thu Apr 9 2020 15:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47587 * 2 1 4 4 C 1.46900 * 110.99617 * 66.04529 * 3 2 1 5 5 C 1.52998 * 109.47169 * 185.33439 * 4 3 2 6 6 C 1.46892 * 111.00495 * 189.99976 * 3 2 1 7 7 H 1.09005 * 108.76758 * 34.91824 * 6 3 2 8 8 C 1.54059 * 108.87882 * 276.40941 * 6 3 2 9 9 C 1.54068 * 112.81635 * 197.50378 * 8 6 3 10 10 C 1.50471 * 112.50141 * 318.28148 * 9 8 6 11 11 C 1.54244 * 108.52563 * 94.14615 * 10 9 8 12 12 C 1.45541 * 112.40566 * 280.02121 * 11 10 9 13 13 C 1.50469 * 108.87702 * 153.42527 * 6 3 2 14 14 H 1.08996 * 109.79185 * 95.13008 * 13 6 3 15 15 C 1.50700 * 109.63214 * 334.64086 * 13 6 3 16 16 H 1.07998 * 119.99682 * 336.22102 * 15 13 6 17 17 C 1.37876 * 120.00322 * 156.21618 * 15 13 6 18 18 N 1.31505 * 120.00199 * 183.20843 * 17 15 13 19 19 Si 1.86802 * 119.99733 * 3.20325 * 17 15 13 20 20 H 1.48503 * 109.47282 * 266.06431 * 19 17 15 21 21 H 1.48497 * 109.47210 * 26.06655 * 19 17 15 22 22 H 1.48507 * 109.47020 * 146.06321 * 19 17 15 23 23 H 1.08997 * 109.47598 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46980 * 299.99811 * 1 2 3 25 25 H 1.08998 * 109.47497 * 59.99877 * 1 2 3 26 26 H 1.09008 * 109.46980 * 240.00189 * 2 1 3 27 27 H 1.09004 * 109.47356 * 120.00820 * 2 1 3 28 28 H 1.08999 * 109.47441 * 305.33646 * 4 3 2 29 29 H 1.09005 * 109.47188 * 65.33904 * 4 3 2 30 30 H 1.08999 * 109.46970 * 292.64594 * 5 4 3 31 31 H 1.08996 * 109.47330 * 52.64550 * 5 4 3 32 32 H 1.09004 * 109.47352 * 172.64735 * 5 4 3 33 33 H 1.09000 * 108.82060 * 76.64505 * 8 6 3 34 34 H 1.09001 * 108.81210 * 318.36167 * 8 6 3 35 35 H 1.09001 * 108.88208 * 197.50061 * 9 8 6 36 36 H 1.09005 * 108.87966 * 79.05876 * 9 8 6 37 37 H 1.09004 * 109.62695 * 334.43860 * 10 9 8 38 38 H 1.08996 * 109.63167 * 213.86394 * 10 9 8 39 39 H 1.08997 * 108.89623 * 159.26682 * 11 10 9 40 40 H 1.08998 * 108.81287 * 40.72209 * 11 10 9 41 41 H 1.09003 * 108.89640 * 301.18051 * 12 11 10 42 42 H 1.08994 * 108.81525 * 182.63586 * 12 11 10 43 43 H 0.97006 * 119.99939 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0668 1.2533 5 6 2.0774 3.5389 1.1637 6 6 3.4685 1.4311 -0.2381 7 1 3.7359 0.6318 -0.9295 8 6 4.2008 1.2005 1.0975 9 6 5.6750 1.6461 1.0553 10 6 6.3562 1.2618 -0.2301 11 6 6.2666 2.4519 -1.2072 12 6 4.9707 2.5335 -1.8647 13 6 3.8169 2.7538 -0.8650 14 1 4.1304 3.4568 -0.0933 15 6 2.6157 3.3020 -1.5914 16 1 1.8404 2.6329 -1.9344 17 6 2.5063 4.6576 -1.8178 18 7 1.4291 5.1430 -2.3952 19 14 3.8882 5.8048 -1.3042 20 1 3.6059 6.3446 0.0501 21 1 5.1704 5.0560 -1.2814 22 1 3.9869 6.9258 -2.2733 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5140 0.8899 28 1 0.5950 1.9966 1.4176 29 1 2.1962 1.5943 2.0830 30 1 3.1643 3.6138 1.1307 31 1 1.6553 3.9783 0.2600 32 1 1.7027 4.0733 2.0368 33 1 4.1614 0.1388 1.3414 34 1 3.6873 1.7582 1.8808 35 1 6.2068 1.1852 1.8877 36 1 5.7194 2.7295 1.1676 37 1 5.8582 0.3942 -0.6632 38 1 7.4024 1.0269 -0.0342 39 1 7.0414 2.3447 -1.9662 40 1 6.4404 3.3748 -0.6538 41 1 4.7928 1.6068 -2.4104 42 1 4.9873 3.3619 -2.5728 43 1 1.3523 6.0968 -2.5549 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259805640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:49 Heat of formation + Delta-G solvation = 12.679260 kcal Electronic energy + Delta-G solvation = -19592.442204 eV Core-core repulsion = 17059.029765 eV Total energy + Delta-G solvation = -2533.412439 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.49437 -36.15842 -33.09237 -31.79226 -31.00178 -30.10029 -27.79749 -25.66890 -23.54313 -22.35360 -22.17216 -20.39870 -19.42461 -17.86958 -16.75476 -15.78518 -14.94697 -14.35001 -14.24578 -13.91362 -13.64206 -13.21519 -13.05519 -12.55715 -12.37811 -12.00499 -11.84972 -11.53835 -11.50017 -11.23006 -11.07131 -10.86170 -10.57103 -10.45844 -10.29763 -10.22216 -10.01204 -9.85889 -9.73746 -9.53528 -9.19918 -9.03993 -8.68403 -8.20140 -7.13838 -5.81447 -3.68499 3.38147 3.49037 3.51706 4.61164 4.70330 5.16723 5.27045 5.40042 5.49053 5.53459 5.71970 5.75829 5.82573 5.92959 5.95602 5.98985 6.03257 6.10220 6.18145 6.25160 6.29451 6.37663 6.41735 6.47764 6.52877 6.64271 6.65435 6.70561 6.77874 6.84134 6.89602 6.94736 7.09800 7.21431 7.34114 7.54935 7.79405 7.94976 8.12041 8.17772 8.88916 9.40916 9.82563 11.31532 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.017553 B = 0.014211 C = 0.009659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.786396 B = 1969.877414 C = 2898.249711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.495 5.495 4 C 0.060 3.940 5 C -0.169 4.169 6 C 0.107 3.893 7 H 0.059 0.941 8 C -0.160 4.160 9 C -0.109 4.109 10 C -0.114 4.114 11 C -0.115 4.115 12 C -0.121 4.121 13 C 0.023 3.977 14 H 0.036 0.964 15 C -0.452 4.452 16 H 0.090 0.910 17 C 0.064 3.936 18 N -0.909 5.909 19 Si 0.846 3.154 20 H -0.282 1.282 21 H -0.256 1.256 22 H -0.295 1.295 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.015 0.985 28 H 0.060 0.940 29 H 0.018 0.982 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.024 0.976 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.041 0.959 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.044 -8.078 6.659 11.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 N -0.217 5.217 4 C -0.067 4.067 5 C -0.226 4.226 6 C -0.001 4.001 7 H 0.077 0.923 8 C -0.199 4.199 9 C -0.147 4.147 10 C -0.152 4.152 11 C -0.153 4.153 12 C -0.159 4.159 13 C 0.004 3.996 14 H 0.053 0.947 15 C -0.491 4.491 16 H 0.108 0.892 17 C -0.135 4.135 18 N -0.550 5.550 19 Si 0.674 3.326 20 H -0.209 1.209 21 H -0.180 1.180 22 H -0.222 1.222 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.033 0.967 28 H 0.078 0.922 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.707 -7.667 6.206 10.929 hybrid contribution 1.190 0.334 0.992 1.585 sum 5.897 -7.333 7.198 11.847 Atomic orbital electron populations 1.21773 0.95700 1.00135 1.02700 1.22087 0.95710 0.91021 0.99177 1.62551 1.13669 1.11987 1.33542 1.22022 0.99162 0.95879 0.89683 1.22425 1.02037 0.94880 1.03215 1.21504 0.85229 0.99846 0.93502 0.92282 1.22827 0.95919 0.99838 1.01271 1.21222 0.95306 1.01211 0.96996 1.21325 0.98865 0.98848 0.96118 1.20627 0.98978 0.97477 0.98175 1.20882 0.94423 1.00840 0.99795 1.19190 0.94205 0.92411 0.93827 0.94658 1.20929 1.03623 0.92077 1.32452 0.89181 1.24936 0.94684 0.97860 0.95972 1.69902 1.27159 1.12676 1.45259 0.87395 0.85339 0.81513 0.78305 1.20871 1.18035 1.22205 0.93579 0.93082 0.91496 0.91674 0.96731 0.92169 0.96391 0.92659 0.86744 0.95702 0.93918 0.90803 0.93575 0.92260 0.92004 0.93163 0.93991 0.92974 0.93759 0.92653 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.85 37.16 0.37 -1.85 16 2 C 0.05 0.80 5.49 -3.83 -0.02 0.78 16 3 N -0.50 -9.64 2.70 -227.51 -0.61 -10.25 16 4 C 0.06 1.12 4.95 -3.82 -0.02 1.10 16 5 C -0.17 -3.52 8.18 37.16 0.30 -3.22 16 6 C 0.11 2.06 1.43 -68.43 -0.10 1.96 16 7 H 0.06 1.14 6.08 -51.93 -0.32 0.82 16 8 C -0.16 -2.65 4.33 -25.62 -0.11 -2.76 16 9 C -0.11 -1.70 5.31 -27.44 -0.15 -1.84 16 10 C -0.11 -1.74 5.61 -27.34 -0.15 -1.89 16 11 C -0.12 -2.01 5.22 -29.60 -0.15 -2.17 16 12 C -0.12 -2.47 3.79 -29.60 -0.11 -2.59 16 13 C 0.02 0.49 0.28 -92.39 -0.03 0.47 16 14 H 0.04 0.80 2.81 -51.93 -0.15 0.66 16 15 C -0.45 -11.75 5.68 -34.44 -0.20 -11.95 16 16 H 0.09 2.63 7.29 -52.49 -0.38 2.25 16 17 C 0.06 1.75 4.23 -17.82 -0.08 1.68 16 18 N -0.91 -27.22 13.96 55.43 0.77 -26.44 16 19 Si 0.85 20.94 26.10 -169.99 -4.44 16.50 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.26 -5.95 5.10 56.52 0.29 -5.66 16 22 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.76 6.45 -51.92 -0.33 0.43 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.06 1.07 7.78 -51.92 -0.40 0.66 16 27 H 0.01 0.23 8.10 -51.93 -0.42 -0.19 16 28 H 0.06 1.09 6.24 -51.93 -0.32 0.76 16 29 H 0.02 0.31 5.74 -51.93 -0.30 0.02 16 30 H 0.05 1.16 4.28 -51.93 -0.22 0.94 16 31 H 0.11 2.84 4.91 -51.93 -0.26 2.59 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.26 4.36 -51.93 -0.23 1.03 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.99 6.64 -51.93 -0.34 0.64 16 37 H 0.06 0.94 6.98 -51.93 -0.36 0.58 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.96 6.75 -51.93 -0.35 0.61 16 41 H 0.04 0.88 7.47 -51.93 -0.39 0.49 16 42 H 0.05 1.24 6.55 -51.93 -0.34 0.90 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 290.16 15.07 4.37 4.37 Total: -1.00 -27.73 290.16 -7.67 -35.40 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.32 Total: 2.70 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -0.44 Total: -22.27 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.16 Total: -36.69 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.44 Total: 16.50 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.73 -7.67 -35.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259805640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.075 kcal (2) G-P(sol) polarization free energy of solvation -27.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds