Wall clock time and date at job start Thu Apr 9 2020 15:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46906 * 109.47153 * 2 1 4 4 C 1.46896 * 111.00096 * 77.33142 * 3 2 1 5 5 C 1.53004 * 109.46942 * 196.25557 * 4 3 2 6 6 C 1.46896 * 110.99796 * 201.28692 * 3 2 1 7 7 H 1.09006 * 108.85256 * 214.75682 * 6 3 2 8 8 C 1.50474 * 108.87626 * 333.31527 * 6 3 2 9 9 C 1.54245 * 108.51387 * 214.93336 * 8 6 3 10 10 C 1.45542 * 112.41277 * 280.00334 * 9 8 6 11 11 C 1.54239 * 112.40101 * 61.93616 * 10 9 8 12 12 C 1.50471 * 108.52858 * 280.02404 * 11 10 9 13 13 C 1.54005 * 112.55031 * 94.06919 * 12 11 10 14 14 H 1.09000 * 108.71714 * 79.25842 * 13 12 11 15 15 C 1.50695 * 108.87269 * 197.51543 * 13 12 11 16 16 H 1.08008 * 120.00058 * 124.44989 * 15 13 12 17 17 C 1.37877 * 120.00225 * 304.44710 * 15 13 12 18 18 N 1.31517 * 119.99926 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99899 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47494 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47357 * 120.00325 * 19 17 15 22 22 H 1.48501 * 109.46986 * 240.00005 * 19 17 15 23 23 H 1.09002 * 109.47012 * 300.00956 * 1 2 3 24 24 H 1.09002 * 109.46789 * 59.99809 * 1 2 3 25 25 H 1.08990 * 109.47060 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47311 * 239.99904 * 2 1 3 27 27 H 1.09000 * 109.46705 * 119.99419 * 2 1 3 28 28 H 1.09003 * 109.47447 * 316.25561 * 4 3 2 29 29 H 1.08997 * 109.47199 * 76.25315 * 4 3 2 30 30 H 1.08997 * 109.47093 * 174.72949 * 5 4 3 31 31 H 1.09004 * 109.46846 * 294.72823 * 5 4 3 32 32 H 1.09003 * 109.47266 * 54.72925 * 5 4 3 33 33 H 1.08994 * 109.63344 * 334.64131 * 8 6 3 34 34 H 1.09001 * 109.63303 * 95.03474 * 8 6 3 35 35 H 1.09002 * 108.89338 * 40.76092 * 9 8 6 36 36 H 1.08997 * 108.89616 * 159.24287 * 9 8 6 37 37 H 1.08997 * 108.89315 * 182.69082 * 10 9 8 38 38 H 1.09003 * 108.89232 * 301.28559 * 10 9 8 39 39 H 1.09001 * 109.63091 * 39.73687 * 11 10 9 40 40 H 1.09004 * 109.62681 * 160.31509 * 11 10 9 41 41 H 1.09002 * 108.87720 * 214.92728 * 12 11 10 42 42 H 1.09002 * 108.87906 * 333.46917 * 12 11 10 43 43 H 0.96995 * 119.99497 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.9117 1.9816 1.3380 5 6 2.0363 3.5027 1.2297 6 6 3.4000 1.4554 -0.4979 7 1 3.9292 2.2414 0.0410 8 6 4.0808 0.1399 -0.2326 9 6 5.5624 0.4132 0.0982 10 6 6.3646 0.6398 -1.0948 11 6 5.9010 1.8784 -1.8884 12 6 4.6998 1.4974 -2.7108 13 6 3.3718 1.8106 -1.9967 14 1 3.1607 2.8748 -2.1018 15 6 2.2659 1.0311 -2.6602 16 1 1.6426 0.3721 -2.0738 17 6 2.0497 1.1590 -4.0159 18 7 2.8082 1.9617 -4.7299 19 14 0.6784 0.1931 -4.8382 20 1 -0.0253 -0.6302 -3.8223 21 1 -0.2840 1.1350 -5.4642 22 1 1.2539 -0.6927 -5.8819 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 0.9452 1.7263 1.7728 29 1 2.7090 1.5960 1.9732 30 1 1.8630 3.9520 2.2075 31 1 3.0368 3.7615 0.8831 32 1 1.2979 3.8783 0.5213 33 1 3.6026 -0.3562 0.6119 34 1 4.0109 -0.4935 -1.1169 35 1 5.6246 1.2936 0.7379 36 1 5.9671 -0.4426 0.6384 37 1 7.4047 0.7786 -0.7997 38 1 6.2948 -0.2368 -1.7389 39 1 5.6328 2.6771 -1.1969 40 1 6.7033 2.2135 -2.5458 41 1 4.7309 2.0425 -3.6541 42 1 4.7405 0.4284 -2.9202 43 1 2.6563 2.0514 -5.6837 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259805671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:50 Heat of formation + Delta-G solvation = -13.175677 kcal Electronic energy + Delta-G solvation = -19308.534507 eV Core-core repulsion = 16774.000914 eV Total energy + Delta-G solvation = -2534.533593 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.77467 -37.50901 -35.08827 -32.79283 -32.25815 -32.19078 -28.80110 -27.26287 -25.07038 -24.49019 -23.41897 -21.72999 -20.91658 -19.50599 -18.14039 -17.19581 -16.46091 -16.12701 -15.75165 -15.19606 -14.95420 -14.81493 -14.55717 -14.05227 -13.97983 -13.33969 -13.23760 -13.05640 -12.84104 -12.70498 -12.51993 -12.47261 -12.26479 -12.19481 -12.00454 -11.80557 -11.59897 -11.38979 -11.30928 -11.02636 -10.90094 -10.56955 -10.23016 -10.18497 -8.68364 -7.87853 -5.92033 1.40860 1.44536 1.53439 2.54768 3.24975 3.43411 3.91409 4.04919 4.15628 4.32080 4.37628 4.44997 4.50555 4.57366 4.64312 4.72893 4.76211 4.80308 4.85323 4.90313 4.94401 5.01009 5.07466 5.19706 5.23539 5.27014 5.30459 5.40360 5.43910 5.48961 5.50169 5.52406 5.62971 5.65453 5.76210 5.94654 6.17035 6.26711 6.59633 6.67208 6.79684 7.20990 7.71780 9.17586 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.012366 C = 0.008786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.307628 B = 2263.735882 C = 3185.987326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.052 3.948 3 N -0.540 5.540 4 C 0.050 3.950 5 C -0.139 4.139 6 C 0.110 3.890 7 H 0.051 0.949 8 C -0.133 4.133 9 C -0.106 4.106 10 C -0.108 4.108 11 C -0.114 4.114 12 C -0.090 4.090 13 C 0.064 3.936 14 H -0.027 1.027 15 C -0.486 4.486 16 H 0.086 0.914 17 C -0.001 4.001 18 N -0.931 5.931 19 Si 0.932 3.068 20 H -0.261 1.261 21 H -0.294 1.294 22 H -0.291 1.291 23 H 0.060 0.940 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.042 0.958 42 H 0.022 0.978 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.226 -3.153 12.707 13.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 N -0.264 5.264 4 C -0.078 4.078 5 C -0.197 4.197 6 C 0.002 3.998 7 H 0.069 0.931 8 C -0.171 4.171 9 C -0.144 4.144 10 C -0.146 4.146 11 C -0.152 4.152 12 C -0.129 4.129 13 C 0.045 3.955 14 H -0.009 1.009 15 C -0.525 4.525 16 H 0.104 0.896 17 C -0.196 4.196 18 N -0.574 5.574 19 Si 0.761 3.239 20 H -0.185 1.185 21 H -0.221 1.221 22 H -0.218 1.218 23 H 0.079 0.921 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.041 0.959 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.916 -2.831 12.234 12.703 hybrid contribution -0.332 -0.526 -0.849 1.053 sum 1.584 -3.357 11.385 11.975 Atomic orbital electron populations 1.21739 0.95412 1.01164 1.01404 1.22222 0.95726 0.89523 1.00089 1.62017 1.22447 1.18727 1.23176 1.22152 1.00755 0.95374 0.89517 1.21724 1.00999 0.95450 1.01527 1.21380 0.86603 0.95592 0.96193 0.93136 1.21966 0.96102 0.98263 1.00788 1.20400 0.94630 1.01648 0.97736 1.20418 0.99534 0.97424 0.97179 1.21419 0.97464 0.97845 0.98449 1.21125 0.94277 0.98560 0.98888 1.18971 0.92749 0.93451 0.90317 1.00926 1.22105 1.14374 1.23831 0.92181 0.89626 1.25673 0.98139 0.96966 0.98829 1.70115 1.40892 1.40192 1.06164 0.85882 0.80503 0.78817 0.78735 1.18536 1.22118 1.21794 0.92098 0.94388 0.91742 0.91059 0.94314 0.90502 0.94899 0.90519 0.94142 0.93823 0.91382 0.92892 0.92298 0.91063 0.91106 0.93410 0.92991 0.93137 0.93971 0.95905 0.94310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 9.92 71.98 0.71 -3.68 16 2 C 0.05 1.77 3.19 86.30 0.28 2.05 16 3 N -0.54 -20.03 3.61 -873.66 -3.15 -23.18 16 4 C 0.05 1.48 5.37 86.31 0.46 1.94 16 5 C -0.14 -4.07 9.91 71.98 0.71 -3.35 16 6 C 0.11 4.31 1.39 44.46 0.06 4.37 16 7 H 0.05 1.93 4.77 -2.38 -0.01 1.91 16 8 C -0.13 -4.53 3.76 30.20 0.11 -4.41 16 9 C -0.11 -3.06 5.26 28.74 0.15 -2.91 16 10 C -0.11 -3.34 5.27 28.74 0.15 -3.19 16 11 C -0.11 -4.28 5.61 30.20 0.17 -4.11 16 12 C -0.09 -4.29 4.03 30.12 0.12 -4.16 16 13 C 0.06 3.17 2.09 -10.84 -0.02 3.15 16 14 H -0.03 -1.59 8.14 -2.39 -0.02 -1.61 16 15 C -0.49 -26.06 7.43 25.60 0.19 -25.87 16 16 H 0.09 4.38 3.53 -2.91 -0.01 4.37 16 17 C 0.00 -0.05 5.28 84.65 0.45 0.40 16 18 N -0.93 -55.84 11.21 21.45 0.24 -55.60 16 19 Si 0.93 45.19 29.54 68.60 2.03 47.22 16 20 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 22 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 23 H 0.06 1.67 6.85 -2.39 -0.02 1.65 16 24 H 0.04 1.40 8.02 -2.39 -0.02 1.38 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.07 2.84 4.71 -2.39 -0.01 2.83 16 27 H 0.04 1.15 6.64 -2.39 -0.02 1.14 16 28 H 0.08 2.06 6.63 -2.39 -0.02 2.04 16 29 H 0.03 0.90 8.05 -2.39 -0.02 0.88 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.25 6.85 -2.39 -0.02 1.24 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 33 H 0.07 2.09 5.76 -2.39 -0.01 2.08 16 34 H 0.05 2.08 6.42 -2.39 -0.02 2.07 16 35 H 0.06 1.61 7.47 -2.39 -0.02 1.60 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.56 7.47 -2.39 -0.02 1.55 16 39 H 0.05 1.92 6.98 -2.39 -0.02 1.91 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.04 2.32 6.41 -2.39 -0.02 2.31 16 42 H 0.02 1.12 6.45 -2.39 -0.02 1.10 16 43 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -61.09 302.49 3.63 -57.46 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.97 Total: 13.87 kcal Atomic # 6 Polarization: -43.32 SS G_CDS: 3.55 Total: -39.78 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -2.91 Total: -78.78 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -61.09 3.63 -57.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259805671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.282 kcal (2) G-P(sol) polarization free energy of solvation -61.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds