Wall clock time and date at job start Thu Apr 9 2020 15:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 120.00831 * 2 1 4 4 C 1.38220 * 120.01498 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99034 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47070 * 90.00143 * 5 4 3 7 7 O 1.42905 * 109.46896 * 330.00163 * 5 4 3 8 8 C 1.50701 * 109.47364 * 210.00672 * 5 4 3 9 9 H 1.07997 * 119.99639 * 359.97438 * 8 5 4 10 10 C 1.37869 * 120.00019 * 180.02562 * 8 5 4 11 11 N 1.31517 * 120.00206 * 179.97438 * 10 8 5 12 12 Si 1.86810 * 120.00094 * 359.97438 * 10 8 5 13 13 H 1.48497 * 109.47177 * 89.99945 * 12 10 8 14 14 H 1.48500 * 109.46800 * 210.00185 * 12 10 8 15 15 H 1.48498 * 109.46807 * 330.00073 * 12 10 8 16 16 C 1.38264 * 120.02583 * 0.02562 * 4 3 2 17 17 C 1.38189 * 120.01199 * 359.97438 * 16 4 3 18 18 C 1.38335 * 120.00390 * 180.02562 * 2 1 3 19 19 Cl 1.73595 * 120.01468 * 359.70419 * 18 2 1 20 20 H 1.09003 * 109.47590 * 269.97707 * 1 2 3 21 21 H 1.09003 * 109.47227 * 29.97775 * 1 2 3 22 22 H 1.09003 * 109.47252 * 149.97188 * 1 2 3 23 23 H 1.08002 * 119.99411 * 0.02562 * 3 2 1 24 24 H 1.08996 * 109.47213 * 60.00211 * 6 5 4 25 25 H 1.08999 * 109.47214 * 180.02562 * 6 5 4 26 26 H 1.09001 * 109.47216 * 300.00284 * 6 5 4 27 27 H 0.96695 * 114.00122 * 300.00357 * 7 5 4 28 28 H 0.96998 * 119.99614 * 179.97438 * 11 10 8 29 29 H 1.07997 * 119.99869 * 179.97438 * 16 4 3 30 30 H 1.08001 * 120.00973 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3336 2.5025 -0.0011 6 6 4.5891 2.9445 1.4412 7 8 3.5607 3.4980 -0.6747 8 6 5.6501 2.3226 -0.7121 9 1 5.9151 1.3593 -1.1222 10 6 6.5167 3.3875 -0.8382 11 7 7.6658 3.2305 -1.4583 12 14 6.0585 5.0537 -0.1283 13 1 6.5435 5.1453 1.2723 14 1 6.6856 6.1271 -0.9406 15 1 4.5823 5.2129 -0.1524 16 6 4.2725 0.0002 -0.0016 17 6 3.5825 -1.1971 -0.0016 18 6 2.1987 -1.1980 -0.0005 19 17 1.3313 -2.7016 0.0066 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3634 0.8902 -0.5135 22 1 -0.3634 -0.8897 -0.5143 23 1 1.6583 2.1324 0.0004 24 1 5.1786 2.1852 1.9549 25 1 5.1334 3.8889 1.4408 26 1 3.6368 3.0747 1.9554 27 1 3.3604 3.2837 -1.5961 28 1 8.2752 3.9798 -1.5472 29 1 5.3525 0.0008 -0.0024 30 1 4.1231 -2.1321 -0.0020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259811534.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:52 Heat of formation + Delta-G solvation = -32.571007 kcal Electronic energy + Delta-G solvation = -15140.746790 eV Core-core repulsion = 12540.863371 eV Total energy + Delta-G solvation = -2599.883418 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.35714 -36.84659 -35.81108 -32.75950 -32.25366 -30.92638 -28.97202 -26.68213 -25.12534 -22.75766 -21.54076 -19.38091 -17.53080 -16.35853 -15.47212 -15.19525 -14.89229 -13.92977 -13.86262 -13.31046 -13.17209 -12.72739 -12.32915 -12.21866 -12.12756 -11.94180 -11.61286 -11.42888 -11.21191 -10.99269 -10.42119 -10.35180 -10.24771 -10.04881 -8.98572 -8.68232 -8.51616 -8.34381 -7.95391 -6.20615 -4.32753 1.62527 1.74208 2.42478 3.31362 3.44926 3.66529 4.09854 4.43860 5.06745 5.10136 5.13659 5.39924 5.50604 5.69910 5.72816 5.86483 5.96612 5.98438 6.18807 6.35632 6.42412 6.48021 6.64836 6.71283 6.84463 7.08303 7.23818 7.33530 7.54919 8.20246 8.72895 8.89940 9.42837 10.89067 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.044190 B = 0.007012 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.469456 B = 3992.402518 C = 4375.656558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.108 4.108 4 C -0.063 4.063 5 C 0.249 3.751 6 C -0.128 4.128 7 O -0.573 6.573 8 C -0.557 4.557 9 H 0.082 0.918 10 C 0.086 3.914 11 N -0.888 5.888 12 Si 0.879 3.121 13 H -0.289 1.289 14 H -0.305 1.305 15 H -0.218 1.218 16 C -0.090 4.090 17 C -0.117 4.117 18 C -0.050 4.050 19 Cl -0.091 7.091 20 H 0.068 0.932 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.131 0.869 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.038 0.962 27 H 0.362 0.638 28 H 0.266 0.734 29 H 0.144 0.856 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.327 -6.225 3.410 13.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.126 4.126 4 C -0.063 4.063 5 C 0.210 3.790 6 C -0.185 4.185 7 O -0.380 6.380 8 C -0.594 4.594 9 H 0.100 0.900 10 C -0.119 4.119 11 N -0.524 5.524 12 Si 0.708 3.292 13 H -0.217 1.217 14 H -0.233 1.233 15 H -0.141 1.141 16 C -0.108 4.108 17 C -0.136 4.136 18 C -0.076 4.076 19 Cl -0.063 7.063 20 H 0.087 0.913 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.149 0.851 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.209 0.791 28 H 0.076 0.924 29 H 0.162 0.838 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.220 -6.001 3.935 13.318 hybrid contribution 0.046 0.333 -0.236 0.411 sum -11.174 -5.668 3.699 13.064 Atomic orbital electron populations 1.20787 0.91067 1.02839 1.02256 1.19651 0.96104 0.91547 1.01656 1.20931 0.94141 0.96725 1.00830 1.21022 0.93241 0.97528 0.94534 1.18069 0.89047 0.80988 0.90940 1.21916 0.99735 1.01176 0.95634 1.86601 1.75514 1.47751 1.28106 1.21461 1.00273 0.99216 1.38470 0.89999 1.25001 0.94009 0.99481 0.93435 1.69930 1.09131 1.32363 1.40995 0.87109 0.82074 0.82665 0.77325 1.21681 1.23345 1.14112 1.21341 1.01462 0.90489 0.97510 1.21047 0.91672 0.99158 1.01689 1.20701 0.92247 0.85623 1.09029 1.98306 1.77372 1.33372 1.97226 0.91344 0.91452 0.91370 0.85107 0.91678 0.93011 0.94326 0.79128 0.92421 0.83803 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.61 36.00 0.35 -1.05 16 2 C -0.09 -1.39 5.88 -104.59 -0.62 -2.00 16 3 C -0.11 -1.86 9.00 -39.59 -0.36 -2.21 16 4 C -0.06 -1.22 4.80 -104.62 -0.50 -1.73 16 5 C 0.25 5.49 0.79 -92.93 -0.07 5.41 16 6 C -0.13 -2.71 8.34 37.16 0.31 -2.40 16 7 O -0.57 -12.30 8.81 -35.23 -0.31 -12.61 16 8 C -0.56 -14.50 8.19 -34.44 -0.28 -14.79 16 9 H 0.08 2.27 6.27 -52.49 -0.33 1.94 16 10 C 0.09 2.36 5.45 -17.82 -0.10 2.26 16 11 N -0.89 -26.10 13.96 55.43 0.77 -25.32 16 12 Si 0.88 21.42 23.91 -169.99 -4.06 17.36 16 13 H -0.29 -6.98 6.87 56.52 0.39 -6.59 16 14 H -0.31 -7.61 7.11 56.52 0.40 -7.20 16 15 H -0.22 -5.16 5.30 56.52 0.30 -4.86 16 16 C -0.09 -1.69 8.88 -39.59 -0.35 -2.04 16 17 C -0.12 -1.93 9.83 -39.55 -0.39 -2.32 16 18 C -0.05 -0.79 6.31 -39.49 -0.25 -1.04 16 19 Cl -0.09 -1.25 27.30 -51.86 -1.42 -2.66 16 20 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 21 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 22 H 0.07 0.80 6.91 -51.93 -0.36 0.44 16 23 H 0.13 2.13 7.48 -52.49 -0.39 1.74 16 24 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.36 6.96 9.03 45.56 0.41 7.37 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.14 2.86 6.42 -52.49 -0.34 2.52 16 30 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 258.62 15.07 3.90 3.90 Total: -1.00 -28.63 258.62 -5.92 -34.55 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -2.54 Total: 6.69 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -2.26 Total: -21.90 kcal Atomic # 7 Polarization: -26.10 SS G_CDS: 0.77 Total: -25.32 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.31 Total: -12.61 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.06 Total: 17.36 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.42 Total: -2.66 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.63 -5.92 -34.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259811534.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.975 kcal (2) G-P(sol) polarization free energy of solvation -28.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds