Wall clock time and date at job start Thu Apr 9 2020 15:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 120.00831 * 2 1 4 4 C 1.38220 * 120.01498 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99034 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47070 * 90.00143 * 5 4 3 7 7 O 1.42905 * 109.46896 * 330.00163 * 5 4 3 8 8 C 1.50701 * 109.47364 * 210.00672 * 5 4 3 9 9 H 1.07997 * 119.99639 * 359.97438 * 8 5 4 10 10 C 1.37869 * 120.00019 * 180.02562 * 8 5 4 11 11 N 1.31517 * 120.00206 * 179.97438 * 10 8 5 12 12 Si 1.86810 * 120.00094 * 359.97438 * 10 8 5 13 13 H 1.48497 * 109.47177 * 89.99945 * 12 10 8 14 14 H 1.48500 * 109.46800 * 210.00185 * 12 10 8 15 15 H 1.48498 * 109.46807 * 330.00073 * 12 10 8 16 16 C 1.38264 * 120.02583 * 0.02562 * 4 3 2 17 17 C 1.38189 * 120.01199 * 359.97438 * 16 4 3 18 18 C 1.38335 * 120.00390 * 180.02562 * 2 1 3 19 19 Cl 1.73595 * 120.01468 * 359.70419 * 18 2 1 20 20 H 1.09003 * 109.47590 * 269.97707 * 1 2 3 21 21 H 1.09003 * 109.47227 * 29.97775 * 1 2 3 22 22 H 1.09003 * 109.47252 * 149.97188 * 1 2 3 23 23 H 1.08002 * 119.99411 * 0.02562 * 3 2 1 24 24 H 1.08996 * 109.47213 * 60.00211 * 6 5 4 25 25 H 1.08999 * 109.47214 * 180.02562 * 6 5 4 26 26 H 1.09001 * 109.47216 * 300.00284 * 6 5 4 27 27 H 0.96695 * 114.00122 * 300.00357 * 7 5 4 28 28 H 0.96998 * 119.99614 * 179.97438 * 11 10 8 29 29 H 1.07997 * 119.99869 * 179.97438 * 16 4 3 30 30 H 1.08001 * 120.00973 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3336 2.5025 -0.0011 6 6 4.5891 2.9445 1.4412 7 8 3.5607 3.4980 -0.6747 8 6 5.6501 2.3226 -0.7121 9 1 5.9151 1.3593 -1.1222 10 6 6.5167 3.3875 -0.8382 11 7 7.6658 3.2305 -1.4583 12 14 6.0585 5.0537 -0.1283 13 1 6.5435 5.1453 1.2723 14 1 6.6856 6.1271 -0.9406 15 1 4.5823 5.2129 -0.1524 16 6 4.2725 0.0002 -0.0016 17 6 3.5825 -1.1971 -0.0016 18 6 2.1987 -1.1980 -0.0005 19 17 1.3313 -2.7016 0.0066 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3634 0.8902 -0.5135 22 1 -0.3634 -0.8897 -0.5143 23 1 1.6583 2.1324 0.0004 24 1 5.1786 2.1852 1.9549 25 1 5.1334 3.8889 1.4408 26 1 3.6368 3.0747 1.9554 27 1 3.3604 3.2837 -1.5961 28 1 8.2752 3.9798 -1.5472 29 1 5.3525 0.0008 -0.0024 30 1 4.1231 -2.1321 -0.0020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259811534.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:51 Heat of formation + Delta-G solvation = -50.942415 kcal Electronic energy + Delta-G solvation = -15141.543434 eV Core-core repulsion = 12540.863371 eV Total energy + Delta-G solvation = -2600.680063 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.76143 -38.35081 -37.12134 -34.54097 -33.81351 -32.47103 -30.50142 -27.96084 -26.97636 -24.30399 -22.88307 -20.97756 -19.34564 -17.80069 -17.06758 -17.00669 -16.37339 -15.27221 -15.23442 -15.01689 -14.69246 -14.22614 -14.02090 -13.71774 -13.35616 -13.29595 -13.23879 -12.94887 -12.54977 -12.36211 -12.14153 -11.89843 -11.87504 -11.61525 -10.87424 -10.76495 -10.20534 -9.69258 -9.34058 -8.32953 -6.46198 0.27471 0.41966 1.20070 1.36727 1.46963 1.72074 2.41321 2.72934 3.05686 3.74103 3.90421 3.92067 4.01832 4.43700 4.54025 4.63806 4.69650 4.80844 4.82638 4.84252 4.96378 5.02957 5.26148 5.35946 5.46006 5.47729 5.54794 5.84798 5.95234 6.16086 6.65922 7.16077 7.35027 8.80309 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.044190 B = 0.007012 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.469456 B = 3992.402518 C = 4375.656558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.083 4.083 3 C -0.106 4.106 4 C -0.082 4.082 5 C 0.251 3.749 6 C -0.130 4.130 7 O -0.574 6.574 8 C -0.549 4.549 9 H 0.051 0.949 10 C 0.033 3.967 11 N -0.938 5.938 12 Si 0.935 3.065 13 H -0.286 1.286 14 H -0.315 1.315 15 H -0.202 1.202 16 C -0.109 4.109 17 C -0.115 4.115 18 C -0.053 4.053 19 Cl -0.067 7.067 20 H 0.084 0.916 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.143 0.857 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.064 0.936 27 H 0.372 0.628 28 H 0.265 0.735 29 H 0.120 0.880 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.154 -6.524 4.235 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.083 4.083 5 C 0.212 3.788 6 C -0.187 4.187 7 O -0.381 6.381 8 C -0.586 4.586 9 H 0.069 0.931 10 C -0.166 4.166 11 N -0.577 5.577 12 Si 0.764 3.236 13 H -0.213 1.213 14 H -0.244 1.244 15 H -0.124 1.124 16 C -0.127 4.127 17 C -0.133 4.133 18 C -0.079 4.079 19 Cl -0.038 7.038 20 H 0.102 0.898 21 H 0.100 0.900 22 H 0.094 0.906 23 H 0.161 0.839 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.220 0.780 28 H 0.074 0.926 29 H 0.138 0.862 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.073 -6.315 4.765 16.144 hybrid contribution 0.849 0.247 -0.518 1.024 sum -13.224 -6.068 4.248 15.157 Atomic orbital electron populations 1.20871 0.88392 1.03984 1.03576 1.20005 0.97964 0.90736 0.99680 1.20993 0.92960 0.97961 1.00507 1.20788 0.94327 0.96207 0.96982 1.17899 0.87452 0.82680 0.90792 1.21912 1.00962 1.00470 0.95345 1.86530 1.74981 1.47646 1.28942 1.21786 1.02039 0.97615 1.37192 0.93062 1.25751 0.93952 1.02888 0.94052 1.70059 1.10653 1.33284 1.43689 0.86235 0.82461 0.78532 0.76418 1.21329 1.24449 1.12387 1.21171 1.00496 0.91643 0.99429 1.21155 0.92374 0.98887 1.00911 1.20841 0.92155 0.86964 1.07965 1.98317 1.76670 1.31786 1.97049 0.89776 0.89988 0.90635 0.83929 0.91572 0.94224 0.91750 0.78031 0.92597 0.86220 0.84081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.30 9.61 71.24 0.68 -1.62 16 2 C -0.08 -2.33 5.88 -19.84 -0.12 -2.45 16 3 C -0.11 -3.38 9.00 22.26 0.20 -3.18 16 4 C -0.08 -3.14 4.80 -19.86 -0.10 -3.24 16 5 C 0.25 10.89 0.79 -12.29 -0.01 10.88 16 6 C -0.13 -5.32 8.34 71.98 0.60 -4.72 16 7 O -0.57 -23.52 8.81 -148.98 -1.31 -24.83 16 8 C -0.55 -29.19 8.19 25.60 0.21 -28.98 16 9 H 0.05 2.99 6.27 -2.91 -0.02 2.97 16 10 C 0.03 1.86 5.45 84.65 0.46 2.32 16 11 N -0.94 -57.00 13.96 21.44 0.30 -56.70 16 12 Si 0.94 44.51 23.91 68.60 1.64 46.15 16 13 H -0.29 -13.31 6.87 99.48 0.68 -12.63 16 14 H -0.32 -15.39 7.11 99.48 0.71 -14.68 16 15 H -0.20 -8.98 5.30 99.48 0.53 -8.46 16 16 C -0.11 -4.12 8.88 22.26 0.20 -3.93 16 17 C -0.11 -3.65 9.83 22.29 0.22 -3.43 16 18 C -0.05 -1.53 6.31 22.33 0.14 -1.39 16 19 Cl -0.07 -1.62 27.30 -2.72 -0.07 -1.70 16 20 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.08 1.48 8.09 -2.39 -0.02 1.46 16 22 H 0.07 1.46 6.91 -2.39 -0.02 1.45 16 23 H 0.14 4.17 7.48 -2.91 -0.02 4.15 16 24 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.04 1.70 3.27 -2.39 -0.01 1.70 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.37 13.69 9.03 -74.06 -0.67 13.02 16 28 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.12 5.02 6.42 -2.91 -0.02 5.00 16 30 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -61.37 258.62 3.34 -58.03 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.29 Total: 18.77 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: 2.49 Total: -39.73 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.30 Total: -56.70 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -1.31 Total: -24.83 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.64 Total: 46.15 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.07 Total: -1.70 kcal Total: -61.37 3.34 -58.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259811534.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.090 kcal (2) G-P(sol) polarization free energy of solvation -61.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds