Wall clock time and date at job start Thu Apr 9 2020 15:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86800 * 119.99779 * 2 1 4 4 H 1.48498 * 109.46909 * 269.98935 * 3 2 1 5 5 H 1.48498 * 109.47352 * 29.99645 * 3 2 1 6 6 H 1.48504 * 109.47112 * 149.99672 * 3 2 1 7 7 C 1.39921 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99728 * 163.34842 * 7 2 1 9 9 C 1.41168 * 120.00321 * 343.34840 * 7 2 1 10 10 C 1.40813 * 120.13406 * 334.26913 * 9 7 2 11 11 C 1.37591 * 119.56112 * 180.28141 * 10 9 7 12 12 Cl 1.73601 * 119.78314 * 179.97438 * 11 10 9 13 13 C 1.38627 * 120.43702 * 359.91762 * 11 10 9 14 14 C 1.38857 * 121.23561 * 359.70929 * 13 11 10 15 15 C 1.39437 * 119.10689 * 0.48155 * 14 13 11 16 16 O 1.35752 * 120.03455 * 179.69911 * 15 14 13 17 17 O 1.36285 * 111.26365 * 180.51749 * 14 13 11 18 18 C 1.43750 * 109.25329 * 341.31153 * 17 14 13 19 19 C 1.52049 * 131.72243 * 179.34991 * 13 11 10 20 20 H 0.96996 * 119.99866 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.22010 * 0.30610 * 10 9 7 22 22 H 0.96695 * 113.99903 * 89.99955 * 16 15 14 23 23 H 1.09004 * 110.74741 * 145.96977 * 18 17 14 24 24 H 1.08998 * 110.74990 * 269.14150 * 18 17 14 25 25 H 1.08999 * 110.89805 * 77.74196 * 19 13 11 26 26 H 1.08999 * 111.10110 * 313.97255 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4904 2.0463 -1.4001 5 1 1.4401 2.6527 0.6999 6 1 3.5403 1.4403 0.7001 7 6 2.0083 -1.2118 0.0005 8 1 3.0544 -1.2315 -0.2675 9 6 1.3469 -2.4086 0.3514 10 6 0.2168 -2.3718 1.1905 11 6 -0.4153 -3.5459 1.5297 12 17 -1.8088 -3.5074 2.5644 13 6 0.0525 -4.7594 1.0497 14 6 1.1599 -4.8247 0.2145 15 6 1.8154 -3.6451 -0.1363 16 8 2.9036 -3.6877 -0.9467 17 8 1.4341 -6.1109 -0.1430 18 6 0.7891 -7.0067 0.7779 19 6 -0.4281 -6.1858 1.2649 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1517 -1.4282 1.5651 22 1 2.6955 -3.6194 -1.8885 23 1 0.4643 -7.9147 0.2699 24 1 1.4507 -7.2471 1.6101 25 1 -1.3079 -6.3956 0.6566 26 1 -0.6303 -6.3770 2.3187 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259814061.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:54 Heat of formation + Delta-G solvation = -72.452109 kcal Electronic energy + Delta-G solvation = -14879.898424 eV Core-core repulsion = 12142.452537 eV Total energy + Delta-G solvation = -2737.445887 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 240.034 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.98491 -37.20628 -35.93121 -34.86871 -33.45615 -31.07997 -28.98172 -27.93307 -25.22868 -22.21138 -21.23519 -20.55054 -17.80713 -16.97258 -16.00347 -15.65862 -15.42615 -14.91915 -14.14587 -13.75462 -13.03315 -12.75220 -12.51196 -12.05208 -11.61200 -11.51411 -11.35316 -11.25835 -10.86931 -10.78854 -10.60487 -10.24496 -9.90408 -9.72086 -9.35280 -9.11821 -7.50310 -7.07985 -6.93043 -4.61234 2.37284 2.59119 2.97946 2.98735 3.06080 3.18301 3.77527 4.10318 4.31348 5.11440 5.23691 5.39048 5.54512 5.71015 5.93333 6.15457 6.30280 6.58928 6.72156 6.87606 6.96144 7.21125 7.30328 7.59423 7.72405 8.02232 8.21439 8.48043 8.58320 9.02848 9.92034 Molecular weight = 240.03amu Principal moments of inertia in cm(-1) A = 0.026218 B = 0.009658 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.729611 B = 2898.425547 C = 3870.604607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.434 4.434 8 H 0.092 0.908 9 C 0.125 3.875 10 C -0.166 4.166 11 C 0.038 3.962 12 Cl -0.117 7.117 13 C -0.287 4.287 14 C 0.118 3.882 15 C -0.035 4.035 16 O -0.485 6.485 17 O -0.311 6.311 18 C 0.052 3.948 19 C -0.083 4.083 20 H 0.287 0.713 21 H 0.138 0.862 22 H 0.356 0.644 23 H 0.091 0.909 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 -4.048 1.280 4.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.148 4.148 3 Si 0.741 3.259 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.462 4.462 8 H 0.110 0.890 9 C 0.121 3.879 10 C -0.186 4.186 11 C 0.011 3.989 12 Cl -0.089 7.089 13 C -0.290 4.290 14 C 0.073 3.927 15 C -0.081 4.081 16 O -0.291 6.291 17 O -0.226 6.226 18 C -0.023 4.023 19 C -0.120 4.120 20 H 0.098 0.902 21 H 0.156 0.844 22 H 0.208 0.792 23 H 0.109 0.891 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.155 -4.026 1.723 4.529 hybrid contribution -0.347 0.702 -0.282 0.833 sum -1.501 -3.324 1.440 3.922 Atomic orbital electron populations 1.69822 1.07740 1.30126 1.32533 1.26070 0.94854 1.01918 0.91934 0.86149 0.80652 0.79620 0.79521 1.19181 1.19841 1.18085 1.19556 0.98278 0.90061 1.38271 0.88953 1.17370 0.90239 0.90952 0.89351 1.21083 0.99622 0.95712 1.02147 1.19866 0.89471 0.93510 0.96022 1.98257 1.43865 1.99006 1.67747 1.19594 1.02615 0.93245 1.13510 1.19517 0.92920 0.84052 0.96203 1.17778 0.95724 0.89045 1.05574 1.84807 1.29912 1.95546 1.18837 1.86776 1.71884 1.13747 1.50145 1.23625 0.93275 0.92950 0.92475 1.21436 0.97428 0.91855 1.01278 0.90190 0.84417 0.79242 0.89113 0.91699 0.91279 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.90 10.96 55.55 0.61 -18.29 15 2 C 0.07 1.71 5.15 -17.33 -0.09 1.62 15 3 Si 0.92 17.67 29.59 -169.99 -5.03 12.64 15 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 7 C -0.43 -11.00 8.69 -37.84 -0.33 -11.33 15 8 H 0.09 2.31 7.64 -52.49 -0.40 1.91 15 9 C 0.12 3.24 5.57 -106.79 -0.59 2.65 15 10 C -0.17 -4.17 8.46 -38.84 -0.33 -4.50 15 11 C 0.04 0.88 6.30 -39.67 -0.25 0.63 15 12 Cl -0.12 -2.35 28.77 -51.86 -1.49 -3.84 15 13 C -0.29 -6.44 6.16 -103.58 -0.64 -7.08 15 14 C 0.12 2.81 6.96 -38.91 -0.27 2.54 15 15 C -0.03 -0.87 6.76 -38.11 -0.26 -1.13 15 16 O -0.48 -11.37 12.76 -19.00 -0.24 -11.61 15 17 O -0.31 -6.70 11.11 -20.69 -0.23 -6.93 15 18 C 0.05 0.87 8.00 38.04 0.30 1.17 15 19 C -0.08 -1.47 6.94 -26.33 -0.18 -1.65 15 20 H 0.29 6.30 8.30 -40.82 -0.34 5.96 15 21 H 0.14 3.55 6.19 -52.49 -0.32 3.23 15 22 H 0.36 6.91 9.06 45.56 0.41 7.32 15 23 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.07 1.16 8.14 -51.93 -0.42 0.73 15 26 H 0.07 1.18 8.14 -51.93 -0.42 0.75 15 LS Contribution 247.24 15.07 3.73 3.73 Total: -1.00 -27.68 247.24 -6.43 -34.12 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -1.14 Total: 7.27 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -2.64 Total: -17.08 kcal Atomic # 7 Polarization: -18.90 SS G_CDS: 0.61 Total: -18.29 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.47 Total: -18.54 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -1.49 Total: -3.84 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.68 -6.43 -34.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259814061.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.336 kcal (2) G-P(sol) polarization free energy of solvation -27.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds