Wall clock time and date at job start Thu Apr 9 2020 15:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86800 * 119.99779 * 2 1 4 4 H 1.48498 * 109.46909 * 269.98935 * 3 2 1 5 5 H 1.48498 * 109.47352 * 29.99645 * 3 2 1 6 6 H 1.48504 * 109.47112 * 149.99672 * 3 2 1 7 7 C 1.39921 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99728 * 163.34842 * 7 2 1 9 9 C 1.41168 * 120.00321 * 343.34840 * 7 2 1 10 10 C 1.40813 * 120.13406 * 334.26913 * 9 7 2 11 11 C 1.37591 * 119.56112 * 180.28141 * 10 9 7 12 12 Cl 1.73601 * 119.78314 * 179.97438 * 11 10 9 13 13 C 1.38627 * 120.43702 * 359.91762 * 11 10 9 14 14 C 1.38857 * 121.23561 * 359.70929 * 13 11 10 15 15 C 1.39437 * 119.10689 * 0.48155 * 14 13 11 16 16 O 1.35752 * 120.03455 * 179.69911 * 15 14 13 17 17 O 1.36285 * 111.26365 * 180.51749 * 14 13 11 18 18 C 1.43750 * 109.25329 * 341.31153 * 17 14 13 19 19 C 1.52049 * 131.72243 * 179.34991 * 13 11 10 20 20 H 0.96996 * 119.99866 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.22010 * 0.30610 * 10 9 7 22 22 H 0.96695 * 113.99903 * 89.99955 * 16 15 14 23 23 H 1.09004 * 110.74741 * 145.96977 * 18 17 14 24 24 H 1.08998 * 110.74990 * 269.14150 * 18 17 14 25 25 H 1.08999 * 110.89805 * 77.74196 * 19 13 11 26 26 H 1.08999 * 111.10110 * 313.97255 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4904 2.0463 -1.4001 5 1 1.4401 2.6527 0.6999 6 1 3.5403 1.4403 0.7001 7 6 2.0083 -1.2118 0.0005 8 1 3.0544 -1.2315 -0.2675 9 6 1.3469 -2.4086 0.3514 10 6 0.2168 -2.3718 1.1905 11 6 -0.4153 -3.5459 1.5297 12 17 -1.8088 -3.5074 2.5644 13 6 0.0525 -4.7594 1.0497 14 6 1.1599 -4.8247 0.2145 15 6 1.8154 -3.6451 -0.1363 16 8 2.9036 -3.6877 -0.9467 17 8 1.4341 -6.1109 -0.1430 18 6 0.7891 -7.0067 0.7779 19 6 -0.4281 -6.1858 1.2649 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1517 -1.4282 1.5651 22 1 2.6955 -3.6194 -1.8885 23 1 0.4643 -7.9147 0.2699 24 1 1.4507 -7.2471 1.6101 25 1 -1.3079 -6.3956 0.6566 26 1 -0.6303 -6.3770 2.3187 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259814061.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:54 Heat of formation + Delta-G solvation = -90.540198 kcal Electronic energy + Delta-G solvation = -14880.682783 eV Core-core repulsion = 12142.452537 eV Total energy + Delta-G solvation = -2738.230246 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 240.034 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.64682 -38.96696 -37.68029 -36.65561 -35.22610 -32.68352 -30.67837 -29.74274 -26.97729 -23.76937 -23.02223 -22.28811 -19.58745 -18.74199 -17.67959 -17.37334 -17.10218 -16.51819 -15.84446 -15.52660 -14.73890 -14.41089 -14.04890 -13.70608 -13.31462 -13.14892 -13.05897 -12.87628 -12.42837 -12.25542 -12.13692 -11.98179 -11.62599 -11.43404 -11.15369 -10.84247 -9.31150 -8.85272 -8.71963 -6.49715 0.56535 0.76897 1.38884 1.41044 1.46915 1.55213 2.17321 2.43484 2.64240 3.30719 3.72718 3.93855 4.02563 4.26241 4.54467 4.66288 4.88478 4.95739 4.99316 5.14447 5.19397 5.44394 5.49663 5.73564 5.87497 6.28234 6.36538 6.63311 6.73739 7.25566 8.18215 Molecular weight = 240.03amu Principal moments of inertia in cm(-1) A = 0.026218 B = 0.009658 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.729611 B = 2898.425547 C = 3870.604607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.039 3.961 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.466 4.466 8 H 0.084 0.916 9 C 0.099 3.901 10 C -0.187 4.187 11 C 0.030 3.970 12 Cl -0.089 7.089 13 C -0.289 4.289 14 C 0.108 3.892 15 C -0.059 4.059 16 O -0.494 6.494 17 O -0.325 6.325 18 C 0.048 3.952 19 C -0.079 4.079 20 H 0.296 0.704 21 H 0.125 0.875 22 H 0.371 0.629 23 H 0.132 0.868 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.721 -4.845 1.641 5.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.179 4.179 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.184 1.184 7 C -0.493 4.493 8 H 0.102 0.898 9 C 0.095 3.905 10 C -0.207 4.207 11 C 0.003 3.997 12 Cl -0.061 7.061 13 C -0.292 4.292 14 C 0.062 3.938 15 C -0.106 4.106 16 O -0.301 6.301 17 O -0.240 6.240 18 C -0.026 4.026 19 C -0.116 4.116 20 H 0.107 0.893 21 H 0.143 0.857 22 H 0.224 0.776 23 H 0.150 0.850 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.625 -4.852 2.081 5.524 hybrid contribution -0.278 0.792 -0.376 0.920 sum -1.902 -4.060 1.705 4.797 Atomic orbital electron populations 1.69851 1.09018 1.31495 1.32720 1.26854 0.95537 1.04686 0.90835 0.85100 0.79021 0.75266 0.79812 1.18308 1.18650 1.18384 1.19696 0.98175 0.91235 1.40241 0.89767 1.17693 0.91044 0.91752 0.90013 1.21005 1.00418 0.96029 1.03254 1.19981 0.90156 0.93387 0.96156 1.98252 1.42112 1.98984 1.66712 1.20137 1.01963 0.95210 1.11897 1.19658 0.93164 0.84764 0.96175 1.18023 0.96344 0.89742 1.06449 1.84728 1.29933 1.95572 1.19911 1.86751 1.72580 1.13158 1.51529 1.24034 0.92690 0.93070 0.92823 1.21566 0.98397 0.88684 1.02982 0.89306 0.85736 0.77582 0.84977 0.90181 0.89788 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.82 10.96 21.83 0.24 -39.59 15 2 C 0.04 1.85 5.15 85.24 0.44 2.29 15 3 Si 0.99 36.31 29.59 68.60 2.03 38.34 15 4 H -0.26 -9.10 7.11 99.48 0.71 -8.40 15 5 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 6 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 7 C -0.47 -24.42 8.69 23.40 0.20 -24.21 15 8 H 0.08 4.38 7.64 -2.91 -0.02 4.36 15 9 C 0.10 5.30 5.57 -21.27 -0.12 5.18 15 10 C -0.19 -9.65 8.46 22.75 0.19 -9.45 15 11 C 0.03 1.39 6.30 22.21 0.14 1.53 15 12 Cl -0.09 -3.46 28.77 -2.72 -0.08 -3.54 15 13 C -0.29 -12.65 6.16 -19.19 -0.12 -12.77 15 14 C 0.11 5.10 6.96 22.71 0.16 5.25 15 15 C -0.06 -3.04 6.76 23.22 0.16 -2.88 15 16 O -0.49 -23.67 12.76 -90.74 -1.16 -24.83 15 17 O -0.33 -13.44 11.11 -96.77 -1.08 -14.52 15 18 C 0.05 1.42 8.00 72.56 0.58 2.00 15 19 C -0.08 -2.56 6.94 30.85 0.21 -2.35 15 20 H 0.30 13.06 8.30 -92.71 -0.77 12.29 15 21 H 0.12 6.63 6.19 -2.91 -0.02 6.61 15 22 H 0.37 14.79 9.06 -74.06 -0.67 14.12 15 23 H 0.13 2.84 8.14 -2.39 -0.02 2.82 15 24 H 0.08 2.14 8.14 -2.39 -0.02 2.13 15 25 H 0.08 2.50 8.14 -2.39 -0.02 2.48 15 26 H 0.09 2.65 8.14 -2.39 -0.02 2.63 15 Total: -1.00 -60.12 247.24 2.37 -57.75 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.56 Total: 21.79 kcal Atomic # 6 Polarization: -37.27 SS G_CDS: 1.85 Total: -35.42 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.24 Total: -39.59 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -2.23 Total: -39.35 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Atomic # 17 Polarization: -3.46 SS G_CDS: -0.08 Total: -3.54 kcal Total: -60.12 2.37 -57.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259814061.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.789 kcal (2) G-P(sol) polarization free energy of solvation -60.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds