Wall clock time and date at job start Thu Apr 9 2020 15:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46902 * 109.46955 * 2 1 4 4 C 1.46896 * 110.99769 * 287.99598 * 3 2 1 5 5 C 1.53004 * 109.47116 * 176.88733 * 4 3 2 6 6 C 1.46899 * 110.99970 * 164.04316 * 3 2 1 7 7 H 1.08992 * 109.47318 * 161.10409 * 6 3 2 8 8 C 1.52999 * 109.46918 * 41.10171 * 6 3 2 9 9 C 1.50700 * 109.47426 * 72.55384 * 8 6 3 10 10 H 1.08001 * 119.99489 * 6.30419 * 9 8 6 11 11 C 1.37874 * 120.00186 * 186.31231 * 9 8 6 12 12 N 1.31509 * 119.99973 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99874 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47113 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47139 * 119.99775 * 13 11 9 16 16 H 1.48500 * 109.47313 * 240.00074 * 13 11 9 17 17 C 1.53005 * 109.46733 * 281.10661 * 6 3 2 18 18 C 1.54265 * 110.03139 * 302.28346 * 17 6 3 19 19 C 1.54894 * 104.19569 * 217.11106 * 18 17 6 20 20 C 1.54887 * 102.74943 * 37.94122 * 19 18 17 21 21 C 1.53876 * 110.02858 * 185.12061 * 17 6 3 22 22 H 1.08998 * 109.47374 * 300.00187 * 1 2 3 23 23 H 1.08998 * 109.47382 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46984 * 60.00344 * 1 2 3 25 25 H 1.08998 * 109.46984 * 119.99656 * 2 1 3 26 26 H 1.08998 * 109.46853 * 239.99747 * 2 1 3 27 27 H 1.09000 * 109.47362 * 296.88258 * 4 3 2 28 28 H 1.08997 * 109.47467 * 56.88586 * 4 3 2 29 29 H 1.08994 * 109.47496 * 187.43947 * 5 4 3 30 30 H 1.08998 * 109.46797 * 307.43975 * 5 4 3 31 31 H 1.09001 * 109.47281 * 67.43244 * 5 4 3 32 32 H 1.09004 * 109.46848 * 192.54960 * 8 6 3 33 33 H 1.09001 * 109.47577 * 312.54936 * 8 6 3 34 34 H 0.97005 * 120.00031 * 180.02562 * 12 11 9 35 35 H 1.08995 * 110.02035 * 63.73202 * 17 6 3 36 36 H 1.09001 * 110.48428 * 335.78395 * 18 17 6 37 37 H 1.08999 * 110.48675 * 98.42775 * 18 17 6 38 38 H 1.08998 * 110.75415 * 279.62565 * 19 18 17 39 39 H 1.09001 * 110.91584 * 156.33214 * 19 18 17 40 40 H 1.09004 * 110.48514 * 203.37647 * 20 19 18 41 41 H 1.09002 * 110.60037 * 80.79230 * 20 19 18 42 42 H 1.09000 * 110.03469 * 238.56384 * 21 17 6 43 43 H 1.08999 * 110.03804 * 359.97438 * 21 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7957 2.0225 -1.3043 5 6 2.2462 3.4834 -1.2421 6 6 3.4383 1.4419 0.3770 7 1 3.8622 2.3928 0.0545 8 6 4.1915 0.2931 -0.2968 9 6 4.3291 0.5784 -1.7701 10 1 4.0121 1.5313 -2.1675 11 6 4.8596 -0.3771 -2.6107 12 7 5.2459 -1.5373 -2.1267 13 14 5.0295 -0.0237 -4.4371 14 1 4.5255 1.3431 -4.7258 15 1 6.4589 -0.1176 -4.8285 16 1 4.2386 -1.0156 -5.2090 17 6 3.5677 1.3148 1.8963 18 6 2.7649 2.4344 2.5904 19 6 3.6333 2.8223 3.8130 20 6 5.0742 2.7267 3.2531 21 6 5.0359 1.5006 2.3176 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 2.3691 1.4978 -2.0685 28 1 0.7352 1.9796 -1.5524 29 1 1.9602 3.9914 -2.1630 30 1 1.7703 3.9745 -0.3933 31 1 3.3292 3.5250 -1.1254 32 1 5.1817 0.1971 0.1487 33 1 3.6384 -0.6357 -0.1566 34 1 5.6195 -2.2094 -2.7181 35 1 3.2067 0.3390 2.2212 36 1 2.6439 3.2873 1.9226 37 1 1.7934 2.0621 2.9152 38 1 3.4884 2.1151 4.6297 39 1 3.4126 3.8384 4.1404 40 1 5.7879 2.5677 4.0615 41 1 5.3283 3.6264 2.6926 42 1 5.3872 0.6154 2.8478 43 1 5.6564 1.6809 1.4398 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259820150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:56 Heat of formation + Delta-G solvation = -20.921690 kcal Electronic energy + Delta-G solvation = -18880.323167 eV Core-core repulsion = 16345.453682 eV Total energy + Delta-G solvation = -2534.869485 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.91760 -36.48551 -32.89273 -31.27000 -31.00245 -28.31741 -27.54278 -27.14739 -23.90763 -22.22065 -21.72583 -20.04754 -19.60873 -17.98303 -16.50139 -15.65544 -14.98984 -14.57515 -14.34042 -14.05221 -13.81390 -13.30409 -12.82553 -12.57472 -12.27339 -11.92418 -11.76295 -11.20638 -11.06585 -11.02225 -10.94687 -10.80207 -10.73602 -10.58689 -10.41649 -10.35931 -10.29207 -10.16201 -10.11258 -9.68725 -9.59754 -9.27353 -8.84492 -8.36564 -7.10733 -6.02150 -4.02207 3.27052 3.35797 3.38404 4.42666 4.78489 5.15951 5.18214 5.26680 5.33869 5.69346 5.73288 5.92532 5.93527 5.96720 6.01861 6.07611 6.10472 6.11982 6.15516 6.23461 6.31087 6.34401 6.43166 6.46769 6.55952 6.62754 6.71300 6.73286 6.74206 6.76222 6.86139 6.91182 7.00128 7.12146 7.19967 7.61641 7.69273 7.93212 8.13904 8.21686 8.41128 9.03527 9.59637 11.08547 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.020696 B = 0.008773 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.600150 B = 3190.821371 C = 3689.345649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 N -0.523 5.523 4 C 0.032 3.968 5 C -0.144 4.144 6 C 0.086 3.914 7 H 0.071 0.929 8 C -0.010 4.010 9 C -0.516 4.516 10 H 0.063 0.937 11 C 0.059 3.941 12 N -0.892 5.892 13 Si 0.882 3.118 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.285 1.285 17 C -0.077 4.077 18 C -0.099 4.099 19 C -0.129 4.129 20 C -0.123 4.123 21 C -0.119 4.119 22 H 0.051 0.949 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.015 0.985 33 H 0.029 0.971 34 H 0.258 0.742 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.271 6.658 7.278 11.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 N -0.247 5.247 4 C -0.096 4.096 5 C -0.202 4.202 6 C -0.022 4.022 7 H 0.089 0.911 8 C -0.048 4.048 9 C -0.554 4.554 10 H 0.081 0.919 11 C -0.143 4.143 12 N -0.531 5.531 13 Si 0.710 3.290 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.096 4.096 18 C -0.136 4.136 19 C -0.167 4.167 20 C -0.161 4.161 21 C -0.157 4.157 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.470 6.753 7.564 11.522 hybrid contribution 0.677 -0.490 -1.711 1.904 sum -4.793 6.264 5.853 9.822 Atomic orbital electron populations 1.21788 0.96896 1.00143 1.01268 1.21967 0.93547 0.90630 1.01503 1.62399 1.18055 1.16122 1.28095 1.22357 0.99745 0.94645 0.92848 1.21795 1.01538 0.96607 1.00229 1.21964 0.87488 1.00634 0.92073 0.91065 1.19862 0.95843 0.94050 0.95006 1.21396 1.40469 1.00540 0.93010 0.91910 1.24997 0.95683 0.95259 0.98324 1.69973 1.42513 1.05659 1.34950 0.86688 0.77770 0.78347 0.86160 1.19708 1.21098 1.21138 1.21722 0.93797 0.98107 0.96006 1.22197 0.97493 0.98632 0.95328 1.22552 0.95797 1.00104 0.98217 1.22350 0.96522 0.98729 0.98452 1.22193 0.97388 0.97004 0.99107 0.93021 0.93487 0.93355 0.91971 0.92935 0.90685 0.92968 0.93625 0.93093 0.92442 0.96637 0.95265 0.93189 0.92228 0.91714 0.92487 0.92337 0.92614 0.92698 0.92132 0.92625 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.96 37.16 0.37 -1.88 16 2 C 0.05 0.98 4.14 -3.82 -0.02 0.97 16 3 N -0.52 -9.81 3.93 -226.65 -0.89 -10.70 16 4 C 0.03 0.59 4.98 -3.82 -0.02 0.57 16 5 C -0.14 -2.41 9.37 37.16 0.35 -2.06 16 6 C 0.09 1.72 0.92 -67.71 -0.06 1.66 16 7 H 0.07 1.48 5.51 -51.93 -0.29 1.19 16 8 C -0.01 -0.24 3.89 -27.88 -0.11 -0.35 16 9 C -0.52 -13.69 7.21 -34.44 -0.25 -13.93 16 10 H 0.06 1.63 5.48 -52.49 -0.29 1.34 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 12 N -0.89 -26.13 13.28 55.43 0.74 -25.39 16 13 Si 0.88 21.29 29.54 -169.99 -5.02 16.27 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 C -0.08 -1.35 2.45 -89.50 -0.22 -1.57 16 18 C -0.10 -1.50 5.93 -25.07 -0.15 -1.65 16 19 C -0.13 -1.71 6.91 -24.74 -0.17 -1.88 16 20 C -0.12 -1.71 6.83 -25.07 -0.17 -1.88 16 21 C -0.12 -1.98 5.76 -25.61 -0.15 -2.13 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.74 6.71 -51.93 -0.35 0.40 16 25 H 0.06 1.20 6.43 -51.93 -0.33 0.86 16 26 H 0.05 1.18 6.88 -51.93 -0.36 0.82 16 27 H 0.08 1.65 4.78 -51.93 -0.25 1.40 16 28 H 0.05 0.91 6.59 -51.93 -0.34 0.56 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.03 6.20 -51.93 -0.32 0.71 16 32 H 0.02 0.41 6.58 -51.93 -0.34 0.07 16 33 H 0.03 0.77 5.67 -51.93 -0.29 0.48 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.06 1.10 7.07 -51.93 -0.37 0.73 16 36 H 0.06 1.03 7.85 -51.93 -0.41 0.62 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.32 6.78 -51.93 -0.35 0.97 16 LS Contribution 314.18 15.07 4.73 4.73 Total: -1.00 -27.48 314.18 -8.78 -36.27 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.65 Total: 1.42 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -0.69 Total: -22.60 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.15 Total: -36.09 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.48 -8.78 -36.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259820150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.348 kcal (2) G-P(sol) polarization free energy of solvation -27.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds