Wall clock time and date at job start Thu Apr 9 2020 15:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46902 * 109.46955 * 2 1 4 4 C 1.46896 * 110.99769 * 287.99598 * 3 2 1 5 5 C 1.53004 * 109.47116 * 176.88733 * 4 3 2 6 6 C 1.46899 * 110.99970 * 164.04316 * 3 2 1 7 7 H 1.08992 * 109.47318 * 161.10409 * 6 3 2 8 8 C 1.52999 * 109.46918 * 41.10171 * 6 3 2 9 9 C 1.50700 * 109.47426 * 72.55384 * 8 6 3 10 10 H 1.08001 * 119.99489 * 6.30419 * 9 8 6 11 11 C 1.37874 * 120.00186 * 186.31231 * 9 8 6 12 12 N 1.31509 * 119.99973 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99874 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47113 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47139 * 119.99775 * 13 11 9 16 16 H 1.48500 * 109.47313 * 240.00074 * 13 11 9 17 17 C 1.53005 * 109.46733 * 281.10661 * 6 3 2 18 18 C 1.54265 * 110.03139 * 302.28346 * 17 6 3 19 19 C 1.54894 * 104.19569 * 217.11106 * 18 17 6 20 20 C 1.54887 * 102.74943 * 37.94122 * 19 18 17 21 21 C 1.53876 * 110.02858 * 185.12061 * 17 6 3 22 22 H 1.08998 * 109.47374 * 300.00187 * 1 2 3 23 23 H 1.08998 * 109.47382 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46984 * 60.00344 * 1 2 3 25 25 H 1.08998 * 109.46984 * 119.99656 * 2 1 3 26 26 H 1.08998 * 109.46853 * 239.99747 * 2 1 3 27 27 H 1.09000 * 109.47362 * 296.88258 * 4 3 2 28 28 H 1.08997 * 109.47467 * 56.88586 * 4 3 2 29 29 H 1.08994 * 109.47496 * 187.43947 * 5 4 3 30 30 H 1.08998 * 109.46797 * 307.43975 * 5 4 3 31 31 H 1.09001 * 109.47281 * 67.43244 * 5 4 3 32 32 H 1.09004 * 109.46848 * 192.54960 * 8 6 3 33 33 H 1.09001 * 109.47577 * 312.54936 * 8 6 3 34 34 H 0.97005 * 120.00031 * 180.02562 * 12 11 9 35 35 H 1.08995 * 110.02035 * 63.73202 * 17 6 3 36 36 H 1.09001 * 110.48428 * 335.78395 * 18 17 6 37 37 H 1.08999 * 110.48675 * 98.42775 * 18 17 6 38 38 H 1.08998 * 110.75415 * 279.62565 * 19 18 17 39 39 H 1.09001 * 110.91584 * 156.33214 * 19 18 17 40 40 H 1.09004 * 110.48514 * 203.37647 * 20 19 18 41 41 H 1.09002 * 110.60037 * 80.79230 * 20 19 18 42 42 H 1.09000 * 110.03469 * 238.56384 * 21 17 6 43 43 H 1.08999 * 110.03804 * 359.97438 * 21 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7957 2.0225 -1.3043 5 6 2.2462 3.4834 -1.2421 6 6 3.4383 1.4419 0.3770 7 1 3.8622 2.3928 0.0545 8 6 4.1915 0.2931 -0.2968 9 6 4.3291 0.5784 -1.7701 10 1 4.0121 1.5313 -2.1675 11 6 4.8596 -0.3771 -2.6107 12 7 5.2459 -1.5373 -2.1267 13 14 5.0295 -0.0237 -4.4371 14 1 4.5255 1.3431 -4.7258 15 1 6.4589 -0.1176 -4.8285 16 1 4.2386 -1.0156 -5.2090 17 6 3.5677 1.3148 1.8963 18 6 2.7649 2.4344 2.5904 19 6 3.6333 2.8223 3.8130 20 6 5.0742 2.7267 3.2531 21 6 5.0359 1.5006 2.3176 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 2.3691 1.4978 -2.0685 28 1 0.7352 1.9796 -1.5524 29 1 1.9602 3.9914 -2.1630 30 1 1.7703 3.9745 -0.3933 31 1 3.3292 3.5250 -1.1254 32 1 5.1817 0.1971 0.1487 33 1 3.6384 -0.6357 -0.1566 34 1 5.6195 -2.2094 -2.7181 35 1 3.2067 0.3390 2.2212 36 1 2.6439 3.2873 1.9226 37 1 1.7934 2.0621 2.9152 38 1 3.4884 2.1151 4.6297 39 1 3.4126 3.8384 4.1404 40 1 5.7879 2.5677 4.0615 41 1 5.3283 3.6264 2.6926 42 1 5.3872 0.6154 2.8478 43 1 5.6564 1.6809 1.4398 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259820150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:55 Heat of formation + Delta-G solvation = -35.488583 kcal Electronic energy + Delta-G solvation = -18880.954835 eV Core-core repulsion = 16345.453682 eV Total energy + Delta-G solvation = -2535.501153 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.44905 -37.85304 -34.94415 -32.74626 -32.59572 -29.72568 -29.11633 -28.64530 -25.67474 -23.70389 -23.45665 -21.27728 -21.00617 -19.59490 -18.52494 -17.10612 -16.64825 -16.37550 -15.74938 -15.53105 -15.22775 -14.84652 -14.37303 -14.08030 -13.97410 -13.43428 -13.16355 -12.93624 -12.86218 -12.59461 -12.50766 -12.27893 -12.24537 -12.08005 -11.85325 -11.76136 -11.70934 -11.64220 -11.42315 -11.32784 -11.16762 -10.92771 -10.70099 -10.50809 -8.80344 -8.17206 -6.22857 1.33285 1.35458 1.46169 2.38288 3.12941 3.29913 3.92516 3.95243 3.98845 4.23376 4.32979 4.53163 4.55821 4.67272 4.69913 4.75872 4.80532 4.82835 4.88293 4.91599 4.96847 5.02424 5.06631 5.10964 5.17262 5.21278 5.24804 5.31525 5.35687 5.38391 5.42563 5.50618 5.52640 5.61287 5.63963 5.65741 5.78770 5.86866 6.27282 6.50396 6.55342 6.91780 7.42301 8.93990 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.020696 B = 0.008773 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.600150 B = 3190.821371 C = 3689.345649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 N -0.508 5.508 4 C 0.030 3.970 5 C -0.136 4.136 6 C 0.099 3.901 7 H 0.066 0.934 8 C 0.000 4.000 9 C -0.516 4.516 10 H 0.068 0.932 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.946 3.054 14 H -0.260 1.260 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.077 4.077 18 C -0.091 4.091 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.121 4.121 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.009 0.991 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.039 0.961 32 H -0.013 1.013 33 H 0.002 0.998 34 H 0.258 0.742 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.646 8.719 7.933 13.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.072 4.072 3 N -0.232 5.232 4 C -0.098 4.098 5 C -0.194 4.194 6 C -0.010 4.010 7 H 0.084 0.916 8 C -0.038 4.038 9 C -0.554 4.554 10 H 0.086 0.914 11 C -0.196 4.196 12 N -0.573 5.573 13 Si 0.772 3.228 14 H -0.184 1.184 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.096 4.096 18 C -0.129 4.129 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.159 4.159 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.028 0.972 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.005 0.995 33 H 0.021 0.979 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.854 8.833 8.222 13.878 hybrid contribution 1.108 -1.174 -1.914 2.503 sum -5.747 7.659 6.308 11.466 Atomic orbital electron populations 1.21690 0.93656 1.01395 1.02205 1.21910 0.96125 0.90161 0.99034 1.62545 1.16727 1.15778 1.28113 1.22376 1.00368 0.95581 0.91475 1.21724 1.00435 0.95221 1.01980 1.21782 0.87612 0.98026 0.93569 0.91600 1.19751 0.94540 0.94862 0.94688 1.21751 1.39173 1.00479 0.94034 0.91395 1.25821 0.95731 0.95161 1.02842 1.70109 1.43993 1.06730 1.36476 0.85669 0.77631 0.78619 0.80853 1.18432 1.20902 1.20947 1.21690 0.94980 0.98686 0.94230 1.22113 0.97632 0.97196 0.95940 1.22519 0.94227 1.01688 0.97327 1.22327 0.97838 0.97056 0.98232 1.22177 0.96295 0.98635 0.98817 0.91434 0.92216 0.92870 0.92854 0.97236 0.94304 0.91070 0.91745 0.91430 0.94155 0.99470 0.97948 0.93298 0.93587 0.91993 0.91972 0.91409 0.90329 0.90934 0.91775 0.92960 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 9.96 71.98 0.72 -3.21 16 2 C 0.06 2.17 4.14 86.30 0.36 2.52 16 3 N -0.51 -18.94 3.93 -870.98 -3.42 -22.36 16 4 C 0.03 1.09 4.98 86.31 0.43 1.52 16 5 C -0.14 -4.29 9.37 71.98 0.67 -3.61 16 6 C 0.10 4.01 0.92 44.92 0.04 4.05 16 7 H 0.07 2.77 5.51 -2.39 -0.01 2.76 16 8 C 0.00 -0.02 3.89 29.85 0.12 0.10 16 9 C -0.52 -28.33 7.21 25.60 0.18 -28.14 16 10 H 0.07 3.60 5.48 -2.91 -0.02 3.59 16 11 C 0.00 0.10 5.46 84.65 0.46 0.56 16 12 N -0.93 -56.81 13.28 21.45 0.28 -56.52 16 13 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 14 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 15 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 16 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 17 C -0.08 -2.68 2.45 -10.07 -0.02 -2.71 16 18 C -0.09 -2.57 5.93 31.67 0.19 -2.38 16 19 C -0.12 -2.79 6.91 31.89 0.22 -2.57 16 20 C -0.12 -3.01 6.83 31.67 0.22 -2.79 16 21 C -0.12 -4.06 5.76 31.32 0.18 -3.88 16 22 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.05 1.53 6.71 -2.39 -0.02 1.51 16 25 H 0.05 2.12 6.43 -2.39 -0.02 2.10 16 26 H 0.01 0.44 6.88 -2.39 -0.02 0.42 16 27 H 0.04 1.72 4.78 -2.39 -0.01 1.71 16 28 H 0.07 2.33 6.59 -2.39 -0.02 2.32 16 29 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.04 1.40 6.20 -2.39 -0.01 1.38 16 32 H -0.01 -0.73 6.58 -2.39 -0.02 -0.75 16 33 H 0.00 0.13 5.67 -2.39 -0.01 0.11 16 34 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 35 H 0.05 1.72 7.07 -2.39 -0.02 1.70 16 36 H 0.06 1.80 7.85 -2.39 -0.02 1.78 16 37 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.04 1.71 6.78 -2.39 -0.02 1.70 16 Total: -1.00 -61.20 314.18 3.61 -57.59 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.96 Total: 15.27 kcal Atomic # 6 Polarization: -44.33 SS G_CDS: 3.76 Total: -40.57 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -3.14 Total: -78.88 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -61.20 3.61 -57.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259820150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.100 kcal (2) G-P(sol) polarization free energy of solvation -61.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds