Wall clock time and date at job start Thu Apr 9 2020 15:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46903 * 109.47152 * 2 1 4 4 C 1.46898 * 111.00184 * 134.88479 * 3 2 1 5 5 C 1.53009 * 109.47086 * 196.60906 * 4 3 2 6 6 C 1.46903 * 111.00004 * 258.83630 * 3 2 1 7 7 H 1.08998 * 109.47115 * 275.64165 * 6 3 2 8 8 C 1.53005 * 109.47073 * 35.63720 * 6 3 2 9 9 C 1.50696 * 109.47343 * 272.23321 * 8 6 3 10 10 H 1.07999 * 119.99855 * 33.62948 * 9 8 6 11 11 C 1.37876 * 120.00157 * 213.62289 * 9 8 6 12 12 N 1.31518 * 120.00234 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99786 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.46911 * 89.99796 * 13 11 9 15 15 H 1.48496 * 109.46813 * 209.99418 * 13 11 9 16 16 H 1.48488 * 109.46887 * 329.99559 * 13 11 9 17 17 C 1.52993 * 109.47607 * 155.63814 * 6 3 2 18 18 C 1.54268 * 110.03421 * 288.22886 * 17 6 3 19 19 C 1.54966 * 104.15780 * 217.13680 * 18 17 6 20 20 C 1.54888 * 102.78207 * 37.87971 * 19 18 17 21 21 C 1.53871 * 110.03676 * 171.00260 * 17 6 3 22 22 H 1.09002 * 109.47487 * 201.41145 * 1 2 3 23 23 H 1.09006 * 109.47591 * 321.41195 * 1 2 3 24 24 H 1.09001 * 109.47256 * 81.41215 * 1 2 3 25 25 H 1.08993 * 109.47548 * 239.99758 * 2 1 3 26 26 H 1.09002 * 109.47212 * 119.99515 * 2 1 3 27 27 H 1.09003 * 109.46869 * 316.60213 * 4 3 2 28 28 H 1.08994 * 109.47584 * 76.60724 * 4 3 2 29 29 H 1.09000 * 109.46405 * 283.56368 * 5 4 3 30 30 H 1.08999 * 109.46954 * 43.56053 * 5 4 3 31 31 H 1.08989 * 109.46889 * 163.56396 * 5 4 3 32 32 H 1.09003 * 109.46579 * 32.23495 * 8 6 3 33 33 H 1.08999 * 109.47255 * 152.22945 * 8 6 3 34 34 H 0.96991 * 119.99858 * 180.02562 * 12 11 9 35 35 H 1.09012 * 110.01425 * 49.61534 * 17 6 3 36 36 H 1.09000 * 110.48351 * 335.77646 * 18 17 6 37 37 H 1.09002 * 110.49011 * 98.42141 * 18 17 6 38 38 H 1.09008 * 110.71451 * 279.56884 * 19 18 17 39 39 H 1.09004 * 110.76466 * 156.22170 * 19 18 17 40 40 H 1.08995 * 110.48633 * 203.41046 * 20 19 18 41 41 H 1.09003 * 110.59359 * 80.82158 * 20 19 18 42 42 H 1.08995 * 110.03656 * 238.56760 * 21 17 6 43 43 H 1.08997 * 110.03029 * 359.95680 * 21 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.1075 1.5588 0.9717 5 6 3.3103 3.0498 1.2490 6 6 2.4454 1.7928 -1.3455 7 1 3.4719 1.4680 -1.5158 8 6 1.5277 1.1503 -2.3876 9 6 2.0615 -0.2098 -2.7567 10 1 2.5646 -0.8120 -2.0147 11 6 1.9075 -0.6854 -4.0416 12 7 2.3730 -1.8725 -4.3637 13 14 1.0378 0.3566 -5.3252 14 1 2.0308 1.2101 -6.0256 15 1 0.3653 -0.5294 -6.3090 16 1 0.0260 1.2171 -4.6613 17 6 2.3659 3.3159 -1.4659 18 6 0.8912 3.7654 -1.5222 19 6 0.8930 4.9470 -2.5247 20 6 1.9155 4.4879 -3.5937 21 6 3.0172 3.7754 -2.7821 22 1 -0.3634 -0.9567 0.3752 23 1 -0.3634 0.8033 0.6410 24 1 -0.3634 0.1535 -1.0161 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.8506 1.0483 1.8999 28 1 4.0271 1.1361 0.5671 29 1 3.8408 3.5058 0.4130 30 1 2.3404 3.5320 1.3704 31 1 3.8943 3.1735 2.1608 32 1 0.5246 1.0469 -1.9737 33 1 1.4908 1.7797 -3.2767 34 1 2.2650 -2.2069 -5.2677 35 1 2.8668 3.7839 -0.6183 36 1 0.2595 2.9560 -1.8880 37 1 0.5560 4.0980 -0.5397 38 1 1.2273 5.8640 -2.0392 39 1 -0.0944 5.0804 -2.9666 40 1 2.3268 5.3478 -4.1223 41 1 1.4511 3.7957 -4.2961 42 1 3.8334 4.4670 -2.5734 43 1 3.3906 2.9134 -3.3348 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259820152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:57 Heat of formation + Delta-G solvation = 7.465669 kcal Electronic energy + Delta-G solvation = -19175.776191 eV Core-core repulsion = 16642.137674 eV Total energy + Delta-G solvation = -2533.638517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.20729 -36.37169 -33.21325 -31.65292 -30.78522 -28.17280 -27.89958 -27.71586 -23.76368 -21.93511 -21.50280 -20.50708 -19.66296 -18.16405 -17.20442 -15.41763 -15.27381 -14.60068 -14.42312 -14.03626 -13.89753 -13.11780 -12.83396 -12.55442 -12.47588 -12.26447 -11.67893 -11.58208 -11.28211 -11.19643 -10.90712 -10.82557 -10.67282 -10.53261 -10.50760 -10.33864 -10.20169 -10.05701 -9.93466 -9.64863 -9.34844 -9.08818 -8.79147 -8.48682 -7.35271 -6.07119 -4.05886 3.28163 3.37188 3.40646 4.41692 4.64059 5.15131 5.17361 5.24192 5.29641 5.43399 5.70231 5.71426 5.91445 5.93852 5.98540 6.04525 6.08720 6.09577 6.20993 6.22215 6.28886 6.32763 6.34695 6.41921 6.47793 6.54620 6.60735 6.65090 6.65663 6.74833 6.81349 6.87402 7.00384 7.09641 7.25017 7.27238 7.61532 7.76731 8.01980 8.11618 8.46330 8.93724 9.55070 11.03913 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.011988 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.571006 B = 2335.137765 C = 3267.464941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.001 3.999 3 N -0.530 5.530 4 C 0.052 3.948 5 C -0.150 4.150 6 C 0.099 3.901 7 H 0.039 0.961 8 C -0.022 4.022 9 C -0.522 4.522 10 H 0.083 0.917 11 C 0.070 3.930 12 N -0.902 5.902 13 Si 0.876 3.124 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.265 1.265 17 C -0.100 4.100 18 C -0.109 4.109 19 C -0.127 4.127 20 C -0.124 4.124 21 C -0.122 4.122 22 H 0.038 0.962 23 H 0.044 0.956 24 H 0.063 0.937 25 H 0.127 0.873 26 H 0.035 0.965 27 H 0.060 0.940 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.030 0.970 34 H 0.263 0.737 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 10.744 6.544 12.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 N -0.255 5.255 4 C -0.077 4.077 5 C -0.208 4.208 6 C -0.009 4.009 7 H 0.057 0.943 8 C -0.060 4.060 9 C -0.559 4.559 10 H 0.101 0.899 11 C -0.131 4.131 12 N -0.540 5.540 13 Si 0.704 3.296 14 H -0.203 1.203 15 H -0.218 1.218 16 H -0.189 1.189 17 C -0.118 4.118 18 C -0.146 4.146 19 C -0.165 4.165 20 C -0.162 4.162 21 C -0.160 4.160 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.144 0.856 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.169 10.900 6.541 12.765 hybrid contribution 0.307 -0.112 -0.983 1.036 sum -0.862 10.787 5.558 12.166 Atomic orbital electron populations 1.21844 0.96239 0.99255 1.01888 1.23085 0.96065 0.89238 1.04146 1.62177 1.33381 1.23295 1.06651 1.22107 0.93374 0.96254 0.95957 1.22082 1.01676 0.96846 1.00157 1.21954 0.98243 0.92534 0.88209 0.94289 1.20082 0.96283 0.95528 0.94065 1.21290 1.37808 1.00561 0.96224 0.89926 1.25097 0.94807 0.94885 0.98326 1.69906 1.46314 1.17927 1.19882 0.86842 0.80628 0.80527 0.81589 1.20267 1.21773 1.18919 1.22291 0.95935 0.96489 0.97096 1.22373 0.97235 0.97134 0.97878 1.22538 0.98421 0.98366 0.97126 1.22347 0.96805 0.99244 0.97756 1.22207 0.97300 0.99848 0.96680 0.94294 0.93699 0.91789 0.85638 0.94682 0.92153 0.95418 0.92044 0.91816 0.93619 0.94554 0.95181 0.92742 0.90077 0.90617 0.92589 0.92401 0.92514 0.92687 0.91937 0.92953 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.72 37.15 0.36 -2.11 16 2 C 0.00 0.02 5.39 -3.83 -0.02 0.00 16 3 N -0.53 -9.71 4.13 -226.65 -0.94 -10.64 16 4 C 0.05 0.83 5.57 -3.82 -0.02 0.80 16 5 C -0.15 -2.04 8.44 37.16 0.31 -1.73 16 6 C 0.10 1.95 1.35 -67.71 -0.09 1.86 16 7 H 0.04 0.86 7.37 -51.93 -0.38 0.47 16 8 C -0.02 -0.51 2.38 -27.88 -0.07 -0.57 16 9 C -0.52 -13.88 8.10 -34.44 -0.28 -14.15 16 10 H 0.08 2.37 5.85 -52.49 -0.31 2.07 16 11 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 12 N -0.90 -26.95 13.96 55.43 0.77 -26.17 16 13 Si 0.88 21.39 27.02 -169.99 -4.59 16.80 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 16 H -0.26 -6.22 6.81 56.52 0.38 -5.84 16 17 C -0.10 -1.68 2.56 -89.51 -0.23 -1.91 16 18 C -0.11 -1.78 6.00 -25.03 -0.15 -1.93 16 19 C -0.13 -1.84 6.91 -24.70 -0.17 -2.01 16 20 C -0.12 -1.94 6.54 -25.07 -0.16 -2.10 16 21 C -0.12 -2.03 5.74 -25.61 -0.15 -2.18 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 24 H 0.06 1.28 5.83 -51.93 -0.30 0.98 16 25 H 0.13 2.90 2.83 -51.93 -0.15 2.76 16 26 H 0.03 0.64 7.31 -51.93 -0.38 0.26 16 27 H 0.06 0.91 7.63 -51.93 -0.40 0.51 16 28 H 0.03 0.47 7.76 -51.93 -0.40 0.07 16 29 H 0.06 0.84 5.86 -51.93 -0.30 0.54 16 30 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 31 H 0.04 0.53 8.14 -51.94 -0.42 0.11 16 32 H 0.04 0.84 3.85 -51.93 -0.20 0.64 16 33 H 0.03 0.69 3.40 -51.93 -0.18 0.51 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.08 1.27 3.72 -51.92 -0.19 1.07 16 36 H 0.08 1.40 5.69 -51.93 -0.30 1.11 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.08 7.72 -51.93 -0.40 0.68 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.33 7.25 -51.93 -0.38 0.96 16 LS Contribution 303.81 15.07 4.58 4.58 Total: -1.00 -27.64 303.81 -8.15 -35.79 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -7.21 Total: 3.81 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -0.76 Total: -24.16 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.16 Total: -36.82 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.59 Total: 16.80 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.64 -8.15 -35.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259820152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.256 kcal (2) G-P(sol) polarization free energy of solvation -27.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds