Wall clock time and date at job start Thu Apr 9 2020 15:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46903 * 109.47152 * 2 1 4 4 C 1.46898 * 111.00184 * 134.88479 * 3 2 1 5 5 C 1.53009 * 109.47086 * 196.60906 * 4 3 2 6 6 C 1.46903 * 111.00004 * 258.83630 * 3 2 1 7 7 H 1.08998 * 109.47115 * 275.64165 * 6 3 2 8 8 C 1.53005 * 109.47073 * 35.63720 * 6 3 2 9 9 C 1.50696 * 109.47343 * 272.23321 * 8 6 3 10 10 H 1.07999 * 119.99855 * 33.62948 * 9 8 6 11 11 C 1.37876 * 120.00157 * 213.62289 * 9 8 6 12 12 N 1.31518 * 120.00234 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99786 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.46911 * 89.99796 * 13 11 9 15 15 H 1.48496 * 109.46813 * 209.99418 * 13 11 9 16 16 H 1.48488 * 109.46887 * 329.99559 * 13 11 9 17 17 C 1.52993 * 109.47607 * 155.63814 * 6 3 2 18 18 C 1.54268 * 110.03421 * 288.22886 * 17 6 3 19 19 C 1.54966 * 104.15780 * 217.13680 * 18 17 6 20 20 C 1.54888 * 102.78207 * 37.87971 * 19 18 17 21 21 C 1.53871 * 110.03676 * 171.00260 * 17 6 3 22 22 H 1.09002 * 109.47487 * 201.41145 * 1 2 3 23 23 H 1.09006 * 109.47591 * 321.41195 * 1 2 3 24 24 H 1.09001 * 109.47256 * 81.41215 * 1 2 3 25 25 H 1.08993 * 109.47548 * 239.99758 * 2 1 3 26 26 H 1.09002 * 109.47212 * 119.99515 * 2 1 3 27 27 H 1.09003 * 109.46869 * 316.60213 * 4 3 2 28 28 H 1.08994 * 109.47584 * 76.60724 * 4 3 2 29 29 H 1.09000 * 109.46405 * 283.56368 * 5 4 3 30 30 H 1.08999 * 109.46954 * 43.56053 * 5 4 3 31 31 H 1.08989 * 109.46889 * 163.56396 * 5 4 3 32 32 H 1.09003 * 109.46579 * 32.23495 * 8 6 3 33 33 H 1.08999 * 109.47255 * 152.22945 * 8 6 3 34 34 H 0.96991 * 119.99858 * 180.02562 * 12 11 9 35 35 H 1.09012 * 110.01425 * 49.61534 * 17 6 3 36 36 H 1.09000 * 110.48351 * 335.77646 * 18 17 6 37 37 H 1.09002 * 110.49011 * 98.42141 * 18 17 6 38 38 H 1.09008 * 110.71451 * 279.56884 * 19 18 17 39 39 H 1.09004 * 110.76466 * 156.22170 * 19 18 17 40 40 H 1.08995 * 110.48633 * 203.41046 * 20 19 18 41 41 H 1.09003 * 110.59359 * 80.82158 * 20 19 18 42 42 H 1.08995 * 110.03656 * 238.56760 * 21 17 6 43 43 H 1.08997 * 110.03029 * 359.95680 * 21 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.1075 1.5588 0.9717 5 6 3.3103 3.0498 1.2490 6 6 2.4454 1.7928 -1.3455 7 1 3.4719 1.4680 -1.5158 8 6 1.5277 1.1503 -2.3876 9 6 2.0615 -0.2098 -2.7567 10 1 2.5646 -0.8120 -2.0147 11 6 1.9075 -0.6854 -4.0416 12 7 2.3730 -1.8725 -4.3637 13 14 1.0378 0.3566 -5.3252 14 1 2.0308 1.2101 -6.0256 15 1 0.3653 -0.5294 -6.3090 16 1 0.0260 1.2171 -4.6613 17 6 2.3659 3.3159 -1.4659 18 6 0.8912 3.7654 -1.5222 19 6 0.8930 4.9470 -2.5247 20 6 1.9155 4.4879 -3.5937 21 6 3.0172 3.7754 -2.7821 22 1 -0.3634 -0.9567 0.3752 23 1 -0.3634 0.8033 0.6410 24 1 -0.3634 0.1535 -1.0161 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.8506 1.0483 1.8999 28 1 4.0271 1.1361 0.5671 29 1 3.8408 3.5058 0.4130 30 1 2.3404 3.5320 1.3704 31 1 3.8943 3.1735 2.1608 32 1 0.5246 1.0469 -1.9737 33 1 1.4908 1.7797 -3.2767 34 1 2.2650 -2.2069 -5.2677 35 1 2.8668 3.7839 -0.6183 36 1 0.2595 2.9560 -1.8880 37 1 0.5560 4.0980 -0.5397 38 1 1.2273 5.8640 -2.0392 39 1 -0.0944 5.0804 -2.9666 40 1 2.3268 5.3478 -4.1223 41 1 1.4511 3.7957 -4.2961 42 1 3.8334 4.4670 -2.5734 43 1 3.3906 2.9134 -3.3348 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259820152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:57 Heat of formation + Delta-G solvation = -8.236199 kcal Electronic energy + Delta-G solvation = -19176.457075 eV Core-core repulsion = 16642.137674 eV Total energy + Delta-G solvation = -2534.319401 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.68083 -37.73318 -35.12975 -33.25875 -32.36558 -29.55420 -29.43396 -29.12826 -25.44250 -23.36743 -23.19322 -21.87022 -21.00658 -19.72314 -19.11800 -16.94130 -16.83266 -16.11559 -15.92264 -15.50804 -15.41275 -14.89097 -14.28273 -14.13058 -13.82951 -13.70613 -13.39045 -13.12951 -12.87232 -12.57874 -12.53804 -12.26097 -12.04610 -11.95667 -11.87318 -11.73077 -11.71767 -11.67794 -11.32812 -11.18649 -11.07208 -10.85506 -10.56466 -10.42209 -8.93724 -8.24374 -6.26103 1.31357 1.33942 1.44871 2.34689 3.07784 3.21222 3.90017 3.91778 3.99886 4.17600 4.33003 4.47679 4.54847 4.60460 4.67080 4.73056 4.76278 4.81321 4.88125 4.90262 4.93004 4.97477 5.01892 5.08200 5.13671 5.16555 5.18025 5.26200 5.31950 5.38671 5.42257 5.47248 5.52593 5.57581 5.63153 5.75235 5.79945 5.84354 6.28174 6.47002 6.56079 6.80901 7.36875 8.88954 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.011988 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.571006 B = 2335.137765 C = 3267.464941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.000 4.000 3 N -0.523 5.523 4 C 0.046 3.954 5 C -0.142 4.142 6 C 0.107 3.893 7 H 0.007 0.993 8 C -0.013 4.013 9 C -0.512 4.512 10 H 0.051 0.949 11 C 0.011 3.989 12 N -0.950 5.950 13 Si 0.934 3.066 14 H -0.270 1.270 15 H -0.291 1.291 16 H -0.250 1.250 17 C -0.096 4.096 18 C -0.109 4.109 19 C -0.118 4.118 20 C -0.126 4.126 21 C -0.125 4.125 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.012 0.988 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.525 13.851 7.700 15.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.127 4.127 3 N -0.248 5.248 4 C -0.082 4.082 5 C -0.199 4.199 6 C -0.002 4.002 7 H 0.025 0.975 8 C -0.050 4.050 9 C -0.550 4.550 10 H 0.069 0.931 11 C -0.185 4.185 12 N -0.592 5.592 13 Si 0.759 3.241 14 H -0.195 1.195 15 H -0.218 1.218 16 H -0.173 1.173 17 C -0.114 4.114 18 C -0.146 4.146 19 C -0.156 4.156 20 C -0.164 4.164 21 C -0.163 4.163 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.030 0.970 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.897 14.026 7.713 16.119 hybrid contribution 0.599 -1.158 -1.228 1.791 sum -1.298 12.868 6.484 14.468 Atomic orbital electron populations 1.21738 0.95103 1.00586 1.00922 1.22945 0.97069 0.89954 1.02747 1.62318 1.34179 1.22057 1.06203 1.22261 0.91839 0.98579 0.95538 1.21995 1.02275 0.94336 1.01290 1.21749 0.95474 0.94717 0.88224 0.97485 1.19972 0.96733 0.93334 0.94974 1.21628 1.36043 1.01899 0.95398 0.93105 1.25897 0.96016 0.95976 1.00642 1.70046 1.48787 1.19938 1.20390 0.85913 0.79971 0.79125 0.79107 1.19524 1.21777 1.17329 1.22295 0.97089 0.93820 0.98174 1.22331 0.95843 0.97238 0.99187 1.22517 0.98618 0.98335 0.96085 1.22373 0.96724 0.99501 0.97792 1.22235 0.98494 0.99295 0.96278 0.93084 0.92062 0.93917 0.89571 0.93451 0.90860 0.96979 0.92202 0.91426 0.91107 0.94376 0.95358 0.92843 0.88021 0.93242 0.91178 0.89867 0.91645 0.90282 0.94251 0.90523 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.72 71.98 0.70 -3.84 16 2 C 0.00 -0.01 5.39 86.30 0.47 0.46 16 3 N -0.52 -18.76 4.13 -870.99 -3.60 -22.35 16 4 C 0.05 1.40 5.57 86.31 0.48 1.88 16 5 C -0.14 -3.39 8.44 71.99 0.61 -2.78 16 6 C 0.11 4.23 1.35 44.91 0.06 4.29 16 7 H 0.01 0.32 7.37 -2.39 -0.02 0.31 16 8 C -0.01 -0.59 2.38 29.85 0.07 -0.52 16 9 C -0.51 -28.46 8.10 25.60 0.21 -28.25 16 10 H 0.05 3.13 5.85 -2.91 -0.02 3.11 16 11 C 0.01 0.64 5.47 84.65 0.46 1.11 16 12 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 13 Si 0.93 44.96 27.02 68.60 1.85 46.81 16 14 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 15 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 16 H -0.25 -11.28 6.81 99.48 0.68 -10.61 16 17 C -0.10 -3.04 2.56 -10.07 -0.03 -3.06 16 18 C -0.11 -3.24 6.00 31.70 0.19 -3.05 16 19 C -0.12 -2.98 6.91 31.91 0.22 -2.76 16 20 C -0.13 -3.61 6.54 31.67 0.21 -3.40 16 21 C -0.12 -3.92 5.74 31.32 0.18 -3.74 16 22 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.06 1.99 8.12 -2.38 -0.02 1.97 16 24 H 0.04 1.71 5.83 -2.39 -0.01 1.69 16 25 H 0.09 4.18 2.83 -2.39 -0.01 4.17 16 26 H 0.05 1.71 7.31 -2.39 -0.02 1.70 16 27 H 0.07 2.05 7.63 -2.39 -0.02 2.03 16 28 H 0.01 0.40 7.76 -2.39 -0.02 0.38 16 29 H 0.06 1.45 5.86 -2.39 -0.01 1.44 16 30 H 0.07 1.60 8.04 -2.39 -0.02 1.58 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.04 1.77 3.85 -2.39 -0.01 1.76 16 33 H 0.03 1.30 3.40 -2.39 -0.01 1.29 16 34 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.10 2.85 3.72 -2.38 -0.01 2.84 16 36 H 0.05 1.74 5.69 -2.39 -0.01 1.73 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.04 1.29 7.72 -2.39 -0.02 1.27 16 42 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.04 1.41 7.25 -2.39 -0.02 1.40 16 Total: -1.00 -61.89 303.81 3.33 -58.56 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.95 Total: 19.60 kcal Atomic # 6 Polarization: -47.50 SS G_CDS: 3.83 Total: -43.67 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -3.30 Total: -81.31 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.85 Total: 46.81 kcal Total: -61.89 3.33 -58.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259820152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.326 kcal (2) G-P(sol) polarization free energy of solvation -61.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds